Sequence of DPV Rice stripe virus
Rice stripe virus isolate BA-JB16 segment RNA3, complete sequence.
ACC No: HQ343288
Dated: 2011-10-02 | Length: 2484 | CRC: -911924503
ID HQ343288; SV 1; linear; genomic RNA; STD; VRL; 2484 BP.
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AC HQ343288;
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DT 02-OCT-2011 (Rel. 110, Created)
DT 02-OCT-2011 (Rel. 110, Last updated, Version 1)
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DE Rice stripe virus isolate BA-JB16 segment RNA3, complete sequence.
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KW .
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OS Rice stripe virus
OC Viruses; ssRNA negative-strand viruses; Tenuivirus.
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RN [1]
RP 1-2484
RA Jonson M.-G., Sen L., Choi H.-S., Lee G.-S., Kim C.-S., Kim K.-H.;
RT "Development of a RT-PCR restriction analysis-based method for detecting
RT natural genetic reassortment of Rice stripe virus RNA segments";
RL Unpublished.
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RN [2]
RP 1-2484
RA Jonson M.-G., Sen L., Choi H.-S., Lee G.-S., Kim C.-S., Kim K.-H.;
RT ;
RL Submitted (04-OCT-2010) to the INSDC.
RL Department of Agricultural Biotechnology and Plant Genomics and Breeding
RL Institute, Seoul National University, 599 Gwanak-ro, Daehak-dong,
RL Gwanak-gu, Seoul 151-921, South Korea
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FH Key Location/Qualifiers
FH
FT source 1. .2484
FT /organism="Rice stripe virus"
FT /segment="RNA3"
FT /host="Oryza sativa japonica"
FT /isolate="BA-JB16"
FT /mol_type="genomic RNA"
FT /country="South Korea"
FT /collection_date="2009"
FT /db_xref="taxon:12331"
FT gene 66. .701
FT /gene="NS3"
FT CDS 66. .701
FT /codon_start=1
FT /gene="NS3"
FT /product="NS3"
FT /protein_id="ADY76584.1"
FT /translation="MNVFTSSVGSVEFDHPLLLENDLTSLSINCDDVHCSSRALCYIYD
FT IHSSRHPSIDEHQFLRLLHGPDDAITLGSFLKTLIWILSHDKNLPEEYRLPTIMMSSSY
FT VKFFTEVKPRPPSTNCWTCRMSKDNLPFTVPSVKGFPPDAELYIVPISDHDGKPVKFDN
FT RKTLYRSPSKKRHKYVISSDKPPLSARYVKYVDSSTLEPSPGSSPAVL"
FT gene complement(1424. .2392)
FT /gene="N"
FT CDS complement(1424. .2392)
FT /codon_start=1
FT /gene="N"
FT /product="N"
FT /protein_id="ADY76585.1"
FT /translation="MGTNKPATLADLQKAINDISKDALSYLTAHKADVVTFAGQIEYAG
FT YDAATLIGILKDKGGDTLAKDMTMCITMRYVRGTGFVRDVTKKVKVAAGSTEASTLVSR
FT YGIVSSVGTNANAITLGRLAQLFPNVSHEVVRQISGVKMAVDSSDLGLTGCDNLLWDYV
FT PQYIKLESETAPYCTTHSLSHILFVVHIIHSFQITKKTMPEGKKKERGLTKDIDMMKYT
FT TGLLVITCKSKNLADKKKEDGRKKVLDEFITNGKVKTTIFDALAGMSVNTISTYGNQTR
FT LYLAQQSKLMKILAENTSKTASEVSGLVKEFFEDEAEGADD"
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SQ Sequence 2484 BP; 766 A; 529 C; 428 G; 760 T; 1 other;
hq343288 Length: 2484 02-OCT-2011 Type: N Check: 7206 ..
1 acacaaagtc ctgggtaaaa tagttatatt tttactatac aatacaattc
51 cgacatcatc taagtatgaa cgtgttcaca tcgtctgtgg gctctgtgga
101 atttgatcat cctctgcttt tggagaatga tctgaccagt ttgagcataa
151 actgtgatga tgtccattgt tcttcaagag ccttatgtta tatatatgac
201 attcattcat ctaggcaccc ttccattgat gagcatcagt ttctgaggct
251 tcttcatggc cctgatgatg ctatcactct aggctccttc ttgaaaactc
301 tgatctggat tctgtcccat gataagaatc tcccagaaga gtacagactt
351 cctactataa tgatgtcatc ctcatatgtg aagttcttca ctgaagtgaa
401 gccaagaccc ccatcaacaa attgctggac atgcagaatg tccaaagaca
451 atttaccctt taccgttcct agtgtcaagg gatttcctcc agatgcagag
501 ctctacattg tgccaatatc tgaccatgat gggaagcctg tcaaatttga
551 caataggaag actctatata gatcacctag taagaaaagg cataagtatg
601 tcatttcttc cgataaacca cctcttagtg cacgttatgt taagtacgtt
651 gattctagta cactagaacc ctcaccaggc agctctccag ctgtgctgta
701 gaaataaaaa gaaaaaagaa aaaagaaaaa aataaaacaa atgatcaaaa
751 aaacacaaaa aaatcttaaa aatgaaaaac acacaaaaaa accaaaaaaa
801 ctaaaaagac taaaaaacat catgacctaa gaaactgcac accactggtt
851 gtctagtggg ctctagttgg tagagaaagc tatgcttttg cctaaagcca
901 tgattgggcc aatccttaaa atgtgctaag cacattatcc gaagatgtct
951 cggatgtttt tttacctaac ctaatttttt tgtattttta tataattttt
1001 tgattttttt gtattttata tacatatttt tgttttttga tttttttgtt
1051 ttttaatatt ttttcttcta attactacat taatatattt gattattcat
1101 atacttaaaa tatatagtat gtawtataaa aatagagcaa tataataaag
1151 ctagtataac tacattacaa acatatatct aaatatttag atagacttat
1201 caaactaaag actctactag agagtgagta ataataatgg caatacatca
1251 cacacaaagc ccaaaaccac acagacaaaa taacttatgg aatataatta
1301 aaaactaaaa tatacacata taaatataca tattaactta cacctaaaga
1351 agcaacacac tgtttgaaga catgcatctt ccatggagat atgagatccc
1401 ccacaactac tgacttgttc agtctagtca tctgcacctt ctgcctcgtc
1451 ctcgaagaac tccttcacca acccgctgac ttcagatgct gtctttgaag
1501 tgttctcagc aaggatcttc atcagtttgc tctgttgagc caagtacagc
1551 cttgtctgat tcccataagt gctgatcgta ttgacagaca taccagccag
1601 cgcatcgaag attgtggtct tcactttccc attggtgatg aattcatcta
1651 agaccttctt tctgccatct tccttcttct tgtcagccag gttctttgac
1701 ttgcatgtga tgaccaggag accagttgtg tacttcatca tgtctatgtc
1751 ttttgtcaga ccacgctcct tcttcttacc ctctggcatg gtctttttgg
1801 ttatttggaa ggagtgaatg atgtgcacaa caaacaaaat gtgacttagg
1851 gagtgagttg tgcagtaagg agctgtttca ctctccagtt taatatattg
1901 tggaacatag tcccacagta agttatcaca tcctgttagt cccaggtcag
1951 aggagtccac agccatctta acaccagaaa tttgtctcac aacttcatgt
2001 gagacatttg ggaatagctg agccagcctt ccaagtgtga tagcattggc
2051 atttgtcccc accgaggaca ctatcccata cctcgacacc aaggtcgaag
2101 cctctgtgct tccagccgcc actttcactt tcttagtgac atctctcaca
2151 aagccagtgc ctctcacata tctcatggtg atgcacatag tcatatcctt
2201 ggccagtgtg tcaccacctt tgtccttcaa tatgccaatc agagttgcag
2251 catcatagcc tgcatactct atctgaccag caaaggtcac aacatcagct
2301 ttatgagcag tcaggtaaga caacgcatct ttggagatgt cattgattgc
2351 cttctgcaaa tcagctagag tggctggctt gttggtgccc attgtagcaa
2401 gaggtactgg aggaatggtt gcggcttaga tgaaatttgg aatgtaaaag
2451 caaaatcgaa aattttatta cccagacttt gtgt