Sequence of DPV Rice stripe virus
Rice stripe virus isolate JD-JN4 segment RNA3, complete sequence.
ACC No: HQ343290
Dated: 2011-10-02 | Length: 2477 | CRC: 712643047
ID HQ343290; SV 1; linear; genomic RNA; STD; VRL; 2477 BP.
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AC HQ343290;
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DT 02-OCT-2011 (Rel. 110, Created)
DT 02-OCT-2011 (Rel. 110, Last updated, Version 1)
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DE Rice stripe virus isolate JD-JN4 segment RNA3, complete sequence.
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KW .
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OS Rice stripe virus
OC Viruses; ssRNA negative-strand viruses; Tenuivirus.
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RN [1]
RP 1-2477
RA Jonson M.-G., Sen L., Choi H.-S., Lee G.-S., Kim C.-S., Kim K.-H.;
RT "Development of a RT-PCR restriction analysis-based method for detecting
RT natural genetic reassortment of Rice stripe virus RNA segments";
RL Unpublished.
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RN [2]
RP 1-2477
RA Jonson M.-G., Sen L., Choi H.-S., Lee G.-S., Kim C.-S., Kim K.-H.;
RT ;
RL Submitted (04-OCT-2010) to the INSDC.
RL Department of Agricultural Biotechnology and Plant Genomics and Breeding
RL Institute, Seoul National University, 599 Gwanak-ro, Daehak-dong,
RL Gwanak-gu, Seoul 151-921, South Korea
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FH Key Location/Qualifiers
FH
FT source 1. .2477
FT /organism="Rice stripe virus"
FT /segment="RNA3"
FT /host="Oryza sativa japonica"
FT /isolate="JD-JN4"
FT /mol_type="genomic RNA"
FT /country="South Korea"
FT /collection_date="2009"
FT /db_xref="taxon:12331"
FT gene 66. .701
FT /gene="NS3"
FT CDS 66. .701
FT /codon_start=1
FT /gene="NS3"
FT /product="NS3"
FT /protein_id="ADY76588.1"
FT /translation="MNVFTSSVGSVEFDHPLLLENDLTSLSINCDDVHCSSRALCYIYD
FT IHSSRHPSIDEHQFLRLLHGPDDAVTLGSFLKTLIWILSHDKNLPEEYRLPTIMMSSSY
FT VKFFTEVKPRPPSTNCWTCRMSKDNLPFTVPSVKGFPPDAELYIVPISDHDGKPVKFDN
FT RKTLYRSPSKKRHKYVISSDKPPLSARYVKYVDSSALEPSPGSSPAVL"
FT gene complement(1417. .2385)
FT /gene="N"
FT CDS complement(1417. .2385)
FT /codon_start=1
FT /gene="N"
FT /product="N"
FT /protein_id="ADY76589.1"
FT /translation="MGTNKPATLADLQKAINDISKDALSYLTAHKADVVTFAGQIEYAG
FT YDAATLIGILKDKGGDTLAKDMTMCITMRYVRGTGFVRDVTKKVKVAAGSTEASTLVSR
FT YGIVSSVGTNANAITLGRLAQLFPNVSHEVVRQISGVKMAVDSSDLGLTGCDNLLWDYV
FT PQYIKLESETAPYCTTHSLSHILFVVHIIHSFQITKKTMPEGKKKERGLTKDIDMMKYT
FT TGLLVITCKSKNLTDKKKEDGRRKVLDEFITNGKVKTTIFDALAGMSVNTISTYGNQTR
FT LYLAQQSKLMKILAENTSKTASEVSGLVKEFFEDEAEGADD"
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SQ Sequence 2477 BP; 758 A; 525 C; 430 G; 764 T; 0 other;
hq343290 Length: 2477 02-OCT-2011 Type: N Check: 1410 ..
1 acacaaagtc ctgggtaaaa tagttatatt tttactatac aatacaattc
51 cgacatcatc taagtatgaa cgtgttcaca tcgtctgtag gttctgtgga
101 atttgatcat cctctgcttt tggagaatga tctgaccagt ttgagcataa
151 actgtgatga tgtccattgt tcttcaagag ccttatgtta tatatatgac
201 attcattcat ctaggcaccc ttccattgat gagcatcagt ttctgaggct
251 tcttcatggc cctgatgatg ctgtcactct aggctccttc ttgaaaactc
301 tgatctggat tctgtcccat gataagaatc tcccagaaga gtacagactt
351 cctactataa tgatgtcatc ctcatatgtg aagttcttca ctgaagtgaa
401 gccaagaccc ccatcaacaa attgctggac atgcagaatg tccaaagaca
451 atttgccctt taccgttcct agtgtcaagg gatttccccc agatgcagag
501 ctctacattg tgccaatatc tgaccatgat ggaaagcctg tcaaatttga
551 caataggaag actctatata gatcacctag taagaaaagg cataagtatg
601 tcatttcttc tgataaacca cctcttagtg cacgttatgt taagtacgtt
651 gattctagtg cactagaacc ctcaccaggc agctctccag ctgtgctgta
701 gaaataaaaa gaaaaaagga aaaagaaaat aagacaaata atcaaaaaaa
751 cacaaaaaaa tcttaaaaat gaaaaacaag aaaactaaaa aactaaaaaa
801 actaaaaaac atcatgacct aagaaactgc acaccactgg ttgtctagtg
851 ggctctagtt ggtagagaaa gctatgcttt tgcctaaagc catgattggc
901 caatccttaa aatgtgctaa gcacattatc cgaagatgtc tcggatgttt
951 ttttacctaa cctaattttt ttgtattttt atataatttt tttgattttt
1001 ttgcatttta tatacatatt tttgtttttt gatttttttg tttttttaat
1051 attttttctt ataattacta cattattata tttgattatt catatactta
1101 aaatatatag tatgtattat aaaaatagag caatataata aatctagtat
1151 aactacatta cgaacatata tctaaatatt tagatagact tatcaaacta
1201 aagactctac taaagagtga gtaataataa tggcaataca tcacacacaa
1251 agcccaaaac cacacagaca aaataactta tggaatataa ttaaaaacta
1301 aaatatacac atataaatat acatattaac ttacacctaa agaaacaaca
1351 cactgtttga agacatgcat cttccaggga gatatgagat cccccacaac
1401 tactgacttg ttcagtctag tcatctgcac cttctgcctc gtcctcgaag
1451 aactccttca ccaacccgct gacttcagat gctgtctttg aagtgttctc
1501 agcaaggatc ttcatcagtt tgctctgttg agccaagtac agccttgtct
1551 gattcccata agtgctgatc gtattgacag acataccagc cagcgcatcg
1601 aagattgtgg tcttcacttt cccattggtg atgaattcat ctaagacctt
1651 ccttctgcca tcttccttct tcttgtcagt caggttcttt gacttgcatg
1701 tgatgaccag gagaccagtt gtgtacttca tcatgtctat gtcttttgta
1751 agaccacgct ccttcttctt accctctggc atggtctttt tggttatttg
1801 gaaggagtga attatgtgca caacaaacaa aatgtgactt agggagtgag
1851 ttgtgcagta aggagctgtt tcactctcca gtttgatata ttgtggaaca
1901 tagtcccaca gtaagttgtc acatcctgtc agtcccaggt cagaggagtc
1951 cacagccatc ttaacaccag aaatttgtct cacaacttcg tgtgagacat
2001 ttgggaatag ctgagccagc cttccaagtg tgatagcatt ggcatttgtc
2051 cccaccgagg acactatccc atacctcgac accaaggtcg aagcctctgt
2101 gcttccagcc gccactttca ctttcttagt gacatctctc acaaagccag
2151 tgcctctcac atatctcatg gtgatgcaca tagtcatatc cttggccagt
2201 gtgtcaccac ctttgtcctt caatatgcca atcagagttg cagcatcata
2251 gccagcatac tctatctgac cagcaaaggt cacaacatca gctttatgag
2301 cagtcaggta agacaacgca tctttggaga tgtcattgat tgccttctgc
2351 aaatcagcta gagtggctgg cttgttggtg cccattgtag caagaggtac
2401 tggaggaatg gttgcggctt agatgaaatt tggaatgtaa aagcaaaatc
2451 gaaaatttta ttacccagac tttgtgt