Sequence of DPV Rice stripe virus
Rice stripe virus isolate JD-JN6 segment RNA3, complete sequence.
ACC No: HQ343291
Dated: 2011-10-02 | Length: 2480 | CRC: -2123220821
ID HQ343291; SV 1; linear; genomic RNA; STD; VRL; 2480 BP.
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AC HQ343291;
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DT 02-OCT-2011 (Rel. 110, Created)
DT 02-OCT-2011 (Rel. 110, Last updated, Version 1)
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DE Rice stripe virus isolate JD-JN6 segment RNA3, complete sequence.
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KW .
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OS Rice stripe virus
OC Viruses; ssRNA negative-strand viruses; Tenuivirus.
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RN [1]
RP 1-2480
RA Jonson M.-G., Sen L., Choi H.-S., Lee G.-S., Kim C.-S., Kim K.-H.;
RT "Development of a RT-PCR restriction analysis-based method for detecting
RT natural genetic reassortment of Rice stripe virus RNA segments";
RL Unpublished.
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RN [2]
RP 1-2480
RA Jonson M.-G., Sen L., Choi H.-S., Lee G.-S., Kim C.-S., Kim K.-H.;
RT ;
RL Submitted (04-OCT-2010) to the INSDC.
RL Department of Agricultural Biotechnology and Plant Genomics and Breeding
RL Institute, Seoul National University, 599 Gwanak-ro, Daehak-dong,
RL Gwanak-gu, Seoul 151-921, South Korea
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FH Key Location/Qualifiers
FH
FT source 1. .2480
FT /organism="Rice stripe virus"
FT /segment="RNA3"
FT /host="Oryza sativa japonica"
FT /isolate="JD-JN6"
FT /mol_type="genomic RNA"
FT /country="South Korea"
FT /collection_date="2009"
FT /db_xref="taxon:12331"
FT gene 66. .701
FT /gene="NS3"
FT CDS 66. .701
FT /codon_start=1
FT /gene="NS3"
FT /product="NS3"
FT /protein_id="ADY76590.1"
FT /translation="MNVFTSSVGSVEFDHPLLLENDLTSLSINCDDVHCSSRALCYIYD
FT IHSSRHPSIDEHQFLRLLHGPDDAVTLGSFLKTLIWILSHDKNLPEEYRLPTIMMSSSY
FT VKFFTEVKPRPPSTNCWTCRMSKDNLPFTVPSVKGFPPDAELYIVPISDHDGKPVKFDN
FT RKTLYRSPSKKRHKYVISSDKPPLSARYVKYVDSSALEPSPGSSPAVL"
FT gene complement(1420. .2388)
FT /gene="N"
FT CDS complement(1420. .2388)
FT /codon_start=1
FT /gene="N"
FT /product="N"
FT /protein_id="ADY76591.1"
FT /translation="MGTNKPATLADLQKAISDISKDALSYLTAHKADVVTFAGQIEYAG
FT YDAATLIGILKDKGGDTLAKDMTMCITMRYVRGTGFVRDVTKKVKVAAGSTEASTLVSR
FT YGIVSSVGTNANAITLGRLAQLFPNVSHEVVRQISGVKMAVDSSDLGLTGCDNLLWDYV
FT PQYIKLESETAPYCTTHSLSHILFVVHIIHSFQITKKTMPEGKKKERGLTKDIDMMKYT
FT TGLLVITCKSKNLADKKKEDGRKKVLDEFITNGKVKTTIFDALAGMSVNTISTYGNQTR
FT LYLAQQSKLMKILAENTSKTASEVSGLVKEFFEDEAEGADD"
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SQ Sequence 2480 BP; 762 A; 528 C; 430 G; 760 T; 0 other;
hq343291 Length: 2480 02-OCT-2011 Type: N Check: 8491 ..
1 acacaaagtc ctgggtaaaa tagttatatt tttactatac aatacaattc
51 cgacatcatc taagtatgaa cgtgttcaca tcgtctgtgg gttctgtgga
101 atttgatcat cctctgcttt tggagaatga tctgaccagt ttgagcataa
151 actgtgatga tgtccattgt tcttcaagag ccttatgtta tatatatgac
201 attcattcat ctaggcaccc ttccattgat gagcatcagt ttctgaggct
251 tcttcatggc cctgatgatg ctgtcactct aggttccttc ttgaaaactc
301 tgatctggat tctgtcccat gataagaatc tcccagaaga gtacagactt
351 cctactataa tgatgtcatc ctcatatgtg aagttcttca ctgaagtgaa
401 gccaagaccc ccatcaacaa attgctggac atgcagaatg tccaaagaca
451 atttgccctt taccgttcct agtgtcaagg gatttcctcc agatgcagag
501 ctctacattg tgccaatatc tgaccatgat ggaaagcctg tcaaatttga
551 caataggaag actctatata gatcacctag taagaaaagg cataagtatg
601 tcatttcttc cgataaacca cctcttagtg cacgttatgt taagtacgtt
651 gattctagtg cactagaacc ctcaccaggc agctctccag ctgtgctgta
701 gaaataagaa gaataaagaa aaaagaaaat aaaacaaata atcaaaaaaa
751 acacaaaaaa atcttaaaaa tgaaaaacac aaaaaaacca aaaaactaaa
801 aaaaactaaa aaaacatcat gacctaagaa actgcacacc actggttgtc
851 tagtgggctc tagttggtag agaaagctat gcttttgcct aaagccatga
901 ttggccaatc cttaaaatgt gctaagcaca ttatccgaag atgtctcgga
951 tgttttttta cctaacctaa tttttttgta tttttatata attttttgat
1001 ttttttgtat tttatataca tatttttgtt ttttgatttt tttgtttttt
1051 aatatttttc cttctaagta ctacattaat atatttgatt attcatatac
1101 ttaaaacata tagtatgtat tataaaaata gagcaatata ataaagctag
1151 tataactaca ttacaaacat atatctaaat atttagatag acttatcaaa
1201 ctaaagactc tactagagag tgagtaataa taatggcaat acatcacaca
1251 caaagcccaa aaccacacag acaaaataac ctatggaata taattaaaaa
1301 ctaaaatata cacatataaa tatacatatt aacttacacc taaagaaaca
1351 acacactgtt tggagacatg catcttccat ggagatatga gatcccccac
1401 aactactgac ttgttcagtc tagtcatctg caccttctgc ctcgtcctcg
1451 aagaactcct tcaccaaccc gctaacttca gatgctgtct ttgaagtgtt
1501 ctcagcaagg atcttcatca gtttgctctg ttgagccaag tacagccttg
1551 tctgattccc ataagtgctg atcgtattga cagacatacc agccagcgca
1601 tcgaagattg tggtcttcac tttcccattg gtgatgaatt catctaagac
1651 cttctttctg ccatcttcct tcttcttgtc agccaggttc tttgacttgc
1701 atgtgatgac caggagacca gttgtgtact tcatcatgtc tatgtctttt
1751 gtcagaccac gctccttctt cttaccctct ggcatggtct ttttggttat
1801 ttggaaggag tgaatgatgt gcacaacaaa caaaatgtga cttagggagt
1851 gagttgtgca gtaaggagct gtttcactct ccagtttgat atattgtgga
1901 acatagtccc acagtaagtt atcacatcct gttagtccta ggtcagagga
1951 gtccacagcc atcttaacac cagaaatttg tctcacaact tcatgtgaga
2001 catttgggaa tagctgagcc agccttccaa gtgtgatggc attggcattt
2051 gtccccacag aggacactat cccatacctc gacaccaagg tcgaagcctc
2101 tgtgcttcca gccgccactt tcactttctt agtgacatct ctcacaaagc
2151 cagtgcctct cacatatctc atggtgatgc acatagtcat atccttggcc
2201 agtgtgtcac cacctttgtc cttcaatatg ccaatcagag ttgcagcatc
2251 atagcctgca tactctatct gaccagcaaa ggtcacaaca tcagctttat
2301 gagcagtcag gtaagacaac gcatctttgg agatgtcact gattgccttc
2351 tgcaaatcag ctagagtggc tggcttgttg gtgcccattg tagcaagagg
2401 tactggagga atggttgcgg cttagatgaa atttggaatg taaaagcaaa
2451 atcgaaaatt ttattaccca gactttgtgt