Sequence of DPV Rice stripe virus
Rice stripe virus isolate SC-CN70 segment RNA3, complete sequence.
ACC No: HQ343293
Dated: 2011-10-02 | Length: 2479 | CRC: -1957604201
ID HQ343293; SV 1; linear; genomic RNA; STD; VRL; 2479 BP.
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AC HQ343293;
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DT 02-OCT-2011 (Rel. 110, Created)
DT 02-OCT-2011 (Rel. 110, Last updated, Version 1)
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DE Rice stripe virus isolate SC-CN70 segment RNA3, complete sequence.
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KW .
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OS Rice stripe virus
OC Viruses; ssRNA negative-strand viruses; Tenuivirus.
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RN [1]
RP 1-2479
RA Jonson M.-G., Sen L., Choi H.-S., Lee G.-S., Kim C.-S., Kim K.-H.;
RT "Development of a RT-PCR restriction analysis-based method for detecting
RT natural genetic reassortment of Rice stripe virus RNA segments";
RL Unpublished.
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RN [2]
RP 1-2479
RA Jonson M.-G., Sen L., Choi H.-S., Lee G.-S., Kim C.-S., Kim K.-H.;
RT ;
RL Submitted (04-OCT-2010) to the INSDC.
RL Department of Agricultural Biotechnology and Plant Genomics and Breeding
RL Institute, Seoul National University, 599 Gwanak-ro, Daehak-dong,
RL Gwanak-gu, Seoul 151-921, South Korea
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FH Key Location/Qualifiers
FH
FT source 1. .2479
FT /organism="Rice stripe virus"
FT /segment="RNA3"
FT /host="Oryza sativa japonica"
FT /isolate="SC-CN70"
FT /mol_type="genomic RNA"
FT /country="South Korea"
FT /collection_date="2009"
FT /db_xref="taxon:12331"
FT gene 66. .701
FT /gene="NS3"
FT CDS 66. .701
FT /codon_start=1
FT /gene="NS3"
FT /product="NS3"
FT /protein_id="ADY76594.1"
FT /translation="MNVFTSSVGSVEFDHPLLLENDLTSLSINCDDVHCSSRALCYIYD
FT IHSSRHPSIDEHQFLRLLHGPDDAVTLGSFLKTLIWILSHDKNLPEEYRLPTIMMSSSY
FT VKFFTEVKPRPPSTNCWTCRMSKDNLPFTVPSVKGFPPDAELYIVPISDHDGKPVKFDN
FT RKTLYRSPSKKRHKYVISSDKPPLSARYVKYVDSSALEPSPGSSPAVL"
FT gene complement(1419. .2387)
FT /gene="N"
FT CDS complement(1419. .2387)
FT /codon_start=1
FT /gene="N"
FT /product="N"
FT /protein_id="ADY76595.1"
FT /translation="MGTNKPATLADLQKAINDISKDALSYLTAHKADVVTFAGQIEYAG
FT YDAATLIGILKDKGGDTLAKDMTMCITMRYVRGTGFVRDVTKKVKVAAGSTEASTLVSR
FT YGIVSSVGINANAITLGRLAQLFPNVSHEVVRQISGVKMAVDSSDLGLTGCDNLLWDYV
FT PQYIKLESETAPYCTTHSLSHILFVVHIIHSFQITKKTMPEGKKKERGLTKDIDMMKYT
FT TGLLVITCKSKNLADKKKEDGRKKVLDEFITNGKVKTTIFDALAGMSVNTISTYGNQTR
FT LYLAQQSKLMKILAENTSKTASEVSGLVKEFFEDEAEGADD"
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SQ Sequence 2479 BP; 763 A; 527 C; 427 G; 762 T; 0 other;
hq343293 Length: 2479 02-OCT-2011 Type: N Check: 6399 ..
1 acacaaagtc ctgggtaaaa tagttatatt tttactatac aatacaattc
51 cgacatcatc taagtatgaa cgtgttcaca tcgtctgtgg gttctgtgga
101 atttgatcat cctctgcttt tggagaatga tctgaccagt ttgagcataa
151 actgtgatga tgtccattgt tcttcaagag ccttatgtta tatatatgac
201 attcattcat ctaggcaccc ttccattgat gagcatcagt ttctgaggct
251 tcttcatggc cctgatgatg ctgtcactct aggctccttc ttgaaaactc
301 tgatctggat tctgtcccat gataagaatc tcccagaaga gtacagactt
351 cctactataa tgatgtcatc ctcatatgtg aagttcttca ctgaagtgaa
401 gccaagaccc ccatcaacaa attgctggac atgcagaatg tccaaagaca
451 atttgccctt taccgttcct agtgtaaagg gatttcctcc agatgcagag
501 ctctacattg tgccaatatc tgaccatgat ggaaagcctg tcaaatttga
551 caatagaaag actctatata gatcacctag taagaaaagg cataagtatg
601 tcatttcttc tgataaacca cctcttagtg cacgttatgt taagtacgtt
651 gattctagtg cacttgaacc ctcaccaggc agctctccag ctgtgctgta
701 gaaataaaaa aataaaaaaa gaaaaaaaga aaaagaaaat taaacaaata
751 atcaaaaaaa cacaaaaaat cttaaaaatg aaaacaaaaa aaccaaaaaa
801 ctaaaaaaac taaaaaacat catgacctaa gaaactgcac accactggtt
851 gtctagtggg ctctagttgg tagagaaagc tatgcttttg cctaaagcca
901 tgattggcca atccttaaaa tgtgctaagc acattatccg agatgtctcg
951 gatgtttttt acctaaccta atttttgtat ttttatataa ttttttgatt
1001 tttttgtatt ttatatacat atttttgttt tttgattttt ttgtttttta
1051 atattttttc ttctaattac tacattacta tatttgatta ttcatatact
1101 taaaatatat agtatgtatt ataaaaatag agcaatatac taaagctagt
1151 ataaccacat tacaaacata tatctaaata tttagataga cttatcaaac
1201 taaagactct actagagagt gagtaataat aatggcaata catcacacac
1251 aaagcccaaa accacacaga caaaataact tatggaatac aattaaaaac
1301 taaaatatac acatataaat atacatatta acttacacct aaagaaacaa
1351 cacactgttt gaagacatgc atcttccagg gagatatgag atcccccaca
1401 actactgact tgttcagtct agtcatctgc accttctgcc tcgtcctcga
1451 agaactcctt caccaacccg ctgacttcag atgctgtctt tgaagtgttc
1501 tcagcaagga tcttcatcag tttgctctgt tgagccaagt acagccttgt
1551 ctgattccca taagtgctga tcgtattgac agacatacca gccagcgcat
1601 cgaagattgt ggtcttcact ttcccattgg tgatgaattc atctaagacc
1651 ttcttcctgc catcttcctt cttcttgtca gccaggttct ttgacttgca
1701 tgtgatgacc aggagaccag ttgtgtactt catcatgtct atgtcttttg
1751 tcagaccacg ctccttcttc ttaccctctg gcatggtttt tttggttatt
1801 tggaaggagt gaatgatgtg cacaacaaac aaaatgtgac ttagggagtg
1851 agttgtgcag taaggagctg tttcactctc cagtttgata tattgtggaa
1901 catagtccca cagtaagttg tcacatcctg ttagtcccag gtcagaggag
1951 tccacagcca tcttaacacc agaaatttgt ctcacaactt catgtgagac
2001 atttgggaat agctgagcca gccttccaag tgtgatagca ttggcattta
2051 tccccaccga ggacactatc ccatacctcg acaccaaggt cgaagcctct
2101 gtgcttccag ccgccacttt cactttctta gtgacatctc tcacaaagcc
2151 agtgcctctc acatatctca tggtgatgca catagtcata tccttggcca
2201 gtgtgtcacc acctttgtcc tttaatatgc caatcagtgt tgcagcatca
2251 tagcctgcat actctatctg accagcaaag gtcacaacat cagctttatg
2301 agcagtcagg taagacaacg catctttgga gatgtcattg attgccttct
2351 gcaaatcagc tagagtggct ggcttgttgg tgcccattgt agcaagaggt
2401 actggaggaa tggttgcggc ttagatgaaa tttggaatgt aaaagcaaaa
2451 tcgaaaattt tattacccag actttgtgt