Sequence of DPV Rice stripe virus
Rice stripe virus isolate TA-CN5 segment RNA3, complete sequence.
ACC No: HQ343294
Dated: 2011-10-02 | Length: 2479 | CRC: -705627537
ID HQ343294; SV 1; linear; genomic RNA; STD; VRL; 2479 BP.
XX
AC HQ343294;
XX
DT 02-OCT-2011 (Rel. 110, Created)
DT 02-OCT-2011 (Rel. 110, Last updated, Version 1)
XX
DE Rice stripe virus isolate TA-CN5 segment RNA3, complete sequence.
XX
KW .
XX
OS Rice stripe virus
OC Viruses; ssRNA negative-strand viruses; Tenuivirus.
XX
RN [1]
RP 1-2479
RA Jonson M.-G., Sen L., Choi H.-S., Lee G.-S., Kim C.-S., Kim K.-H.;
RT "Development of a RT-PCR restriction analysis-based method for detecting
RT natural genetic reassortment of Rice stripe virus RNA segments";
RL Unpublished.
XX
RN [2]
RP 1-2479
RA Jonson M.-G., Sen L., Choi H.-S., Lee G.-S., Kim C.-S., Kim K.-H.;
RT ;
RL Submitted (04-OCT-2010) to the INSDC.
RL Department of Agricultural Biotechnology and Plant Genomics and Breeding
RL Institute, Seoul National University, 599 Gwanak-ro, Daehak-dong,
RL Gwanak-gu, Seoul 151-921, South Korea
XX
FH Key Location/Qualifiers
FH
FT source 1. .2479
FT /organism="Rice stripe virus"
FT /segment="RNA3"
FT /host="Oryza sativa japonica"
FT /isolate="TA-CN5"
FT /mol_type="genomic RNA"
FT /country="South Korea"
FT /collection_date="2009"
FT /db_xref="taxon:12331"
FT gene 66. .701
FT /gene="NS3"
FT CDS 66. .701
FT /codon_start=1
FT /gene="NS3"
FT /product="NS3"
FT /protein_id="ADY76596.1"
FT /translation="MNVFTSSVGSVEFDHPLLLENDLTSLSINCDDVHCSSRALCYIYD
FT IHSSRHPSIDEHQFLRLLHGPDDAVTLGSFLKTLIWILSHDKNLPEEYRLPTIMMSSSY
FT VKFFTEVKPRPPSTNCWTCRMSKDNLPFTVPSVKGFPPDAELYIVPISDHDGKPVKFDN
FT RKTLYRSPSKKRHKYVISSDKPPLSARYVKYVDSSALEPSPGSSPAVL"
FT gene complement(1419. .2387)
FT /gene="N"
FT CDS complement(1419. .2387)
FT /codon_start=1
FT /gene="N"
FT /product="N"
FT /protein_id="ADY76597.1"
FT /translation="MGTNKPATLADLQKAINDISKDALSYLTAHKADVVTFAGQIEYAG
FT YDAATLIGILKDKGGDTLAKDMTMCITMRYVRGTGFVRDVTKKVKVAAGSTEASTLVSR
FT YGIVSSVGTNANAITLGRLAQLFPNVSHEVVRQISGVKMAVDSSDLGLTGCDNLLWDYV
FT PQYIKLESETAPYCTTHSLSHILFVVHIIHSFQITKKTMPEGKKKERGLTKDIDMMKYT
FT TGLLVITCKSKNLADKKKEDGRKKVLDEFITNGKVKTTIFDALAGMSVNTISTYGNQTR
FT LYLAQQSKLMKILAENTSKTASEVSGLVKEFFEDEAEGADD"
XX
SQ Sequence 2479 BP; 767 A; 525 C; 426 G; 760 T; 1 other;
hq343294 Length: 2479 02-OCT-2011 Type: N Check: 4657 ..
1 acacaaagtc ctgggtaaaa tagttatatt tttactatac aatacaattc
51 cgacatcatc taagtatgaa cgtgttcaca tcgtctgtag gttctgtgga
101 atttgatcat cctctgcttt tggagaatga tctgaccagt ttgagcataa
151 actgtgatga tgtccattgt tcttcaagag ccttatgtta tatatatgac
201 attcattcat ctaggcaccc ttccattgat gagcatcagt ttctgaggct
251 tcttcatggc cctgatgatg ctgtcactct aggctccttc ttgaaaactc
301 tgatctggat tctgtcccat gataagaatc tcccagagga gtacagactt
351 cctactataa tgatgtcatc ctcatatgtg aagttcttca ctgaagtgaa
401 gccaagaccc ccatcaacaa attgctggac atgcagaatg tccaaagaca
451 atttgccctt taccgttcct agtgtcaagg gatttcctcc agatgcagag
501 ctctacattg tgccaatatc tgaccatgat ggaaagcctg tcaaatttga
551 caataggaag actctatata gatcacctag taagaaaagg cataagtatg
601 tcatttcttc cgataaacca cctcttagtg cacgttatgt taagtacgtt
651 gattctagtg cactagaacc ctcaccaggc agctctccag ctgtgctgta
701 gacataaaag gaaaaagaaa aaaaagaaaa agaaaaaata aaacaaataa
751 tcaaaaaaac aaaaaaatct taaaaatgga aaacaaaaaa accaaaaaac
801 taaaaaacta aaaaacatca tgacctaaga aacttcacac cactggttgt
851 ctagtgggct ctagttggta gagaaagcta tgcttttgcc taaagccatg
901 attggccaat ccttaaaatg tgctaagcac attatccgaa gatgtctcgg
951 atgttttttt acctaaccta atttttttgt attttatata attttttgat
1001 ttttttgtat tttatataca tttttttgtt ttttgatttt tttgttttta
1051 atattttttc ttctaattac tacattaata tatttaatta ttcatatact
1101 taaaatatat agtatgtatt ataaaaatag agcaatataa taaagctagt
1151 acaactacat tacaaacata tatctaaata tttagataga cttatcaaac
1201 taaagactct actagagagt gagtaataat aatggcaata cctcacacac
1251 aaagcccaaa accacacaga aaaaataact tatggaatat aattaaaaac
1301 taaaatatac acatataaaa atatatatta acttacacct aaagaaacaa
1351 cacactgttt gaagacatac atcttccatg gagatatgag atcccccaca
1401 actactgact tgttcagtct agtcatctgc accttctgcc tcgtcctcga
1451 agaactcctt caccaaccca ctgacttcag atgctgtctt tgaggtgttc
1501 tcagcaagga tcttcatcag tttgctctgt tgagccaagt acagccttgt
1551 ctgattccca taagtgctga tcgtattgac agacatacca gccagcgcat
1601 cgaagattgt ggtcttcact ttcccattgg tgatgaattc atctaagacc
1651 ttctttctgc catcttcctt cttcttgtca gcaaggttct ttgacttgca
1701 tgtgatgacc aggagaccag ttgtgtactt catcatgtct atgtcttttg
1751 tcagaccacg ctccttcttc ttaccctctg gcatggtctt tttggttatt
1801 tggaaggagt gaatgatgtg cacaacaaac aaaatgtgac ttagggagtg
1851 agttgtgcag taaggagctg tttcactctc cagtttgata tattgtggaa
1901 catagtccca cagtaagtta tcacatcctg ttagtcccag gtcagaggag
1951 tccacagcca tcttaacacc agaaatttgt ctcacaactt catgtgagac
2001 atttgggaaw agctgagcca gccttccaag tgtgatggca ttagcatttg
2051 tccccaccga ggacactatc ccatacctcg acaccaaggt cgaagcctct
2101 gtgcttccag ccgccacttt cactttctta gtgacatctc tcacaaagcc
2151 agtgcctctc acatatctca tggtgatgca catagtcata tccttggcca
2201 gtgtgtcacc acctttgtcc ttcaatatgc caatcagagt tgcagcatca
2251 tagcctgcat actctatctg accagcaaag gtcacaacat cagctttatg
2301 agcagtcagg taagacaacg catctttgga gatgtcattg attgccttct
2351 gcaaatcagc tagagtggct ggcttgttgg tgcccattgt agcaagaggt
2401 actggaggaa tggttgcggc ttagatgaaa tttggaatgt aaaagcaaaa
2451 tcaaaaattt tattacccag actttgtgt