Sequence of DPV Sida golden mosaic Lara virus

Sida golden mosaic Lara virus replication protein (AC1) gene, complete cds; and capsid protein (AV1) gene, partial cds.

ACC No: HQ386857

Dated: 2011-04-12 | Length: 1699 | CRC: 338937531

                
ID   HQ386857; SV 1; linear; genomic DNA; STD; VRL; 1699 BP.
XX
AC   HQ386857;
XX
DT   12-APR-2011 (Rel. 108, Created)
DT   12-APR-2011 (Rel. 108, Last updated, Version 1)
XX
DE   Sida golden mosaic Lara virus replication protein (AC1) gene, complete cds;
DE   and capsid protein (AV1) gene, partial cds.
XX
KW   .
XX
OS   Sida golden mosaic Lara virus
OC   Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC   unclassified Begomovirus.
XX
RN   [1]
RP   1-1699
RA   Zambrano K., Mendez N., Marys E.;
RT   "A new begomovirus infecting Sida sp. in Venezuela";
RL   Unpublished.
XX
RN   [2]
RP   1-1699
RA   Zambrano K., Mendez N., Marys E.;
RT   ;
RL   Submitted (10-OCT-2010) to the EMBL/GenBank/DDBJ databases.
RL   CMBC, IVIC, C/Panamericana km 11, Caracas, Caracas 1020-A, Venezuela
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1699
FT                   /organism="Sida golden mosaic Lara virus"
FT                   /segment="A"
FT                   /host="Sida sp."
FT                   /mol_type="genomic DNA"
FT                   /country="Venezuela"
FT                   /collection_date="2009"
FT                   /clone="M3p20"
FT                   /db_xref="taxon:1002681"
FT   gene            complement(232. .1314)
FT                   /gene="AC1"
FT   CDS             complement(232. .1314)
FT                   /codon_start=1
FT                   /gene="AC1"
FT                   /product="replication protein"
FT                   /note="Rep"
FT                   /protein_id="AEB21261.1"
FT                   /translation="MPSKRFQVNQKNYFLTYPKCSLSKEEALSQIKNLSTPVNKKFIKI
FT                   CRELHENGEPHLHVLIQFEGKYRCTNSRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYLE
FT                   KDGDTVEWGEFQIDGRSARGGQQSANDSYAKALNADSVESAMRVLKEEQPKDFVLQNHN
FT                   IRSNLERIFAKAPEPWVPPFQLSSFTNVPDEMQEWADDYFGSSPAARPVRPVSLIVEGD
FT                   SRTGKTMWARALGPHNYLSGHLDFNARVFSNDVDYNVIDDVAPHYLKLKHWKELLGAQK
FT                   DWQSNCKYGKPVQIKGGIPAIVLCNPGEGASYKDFLNKEENTSLRNWTLKNAVFITLTA
FT                   PLYQESTQTSQEEGNQEKED"
FT   gene            1667. .>1699
FT                   /gene="AV1"
FT   CDS             1667. .>1699
FT                   /codon_start=1
FT                   /gene="AV1"
FT                   /product="capsid protein"
FT                   /note="CP"
FT                   /protein_id="AEB21262.1"
FT                   /translation="MPKREAPWRSM"
XX
SQ   Sequence 1699 BP; 377 A; 418 C; 409 G; 495 T; 0 other;

hq386857 Length: 1699  12-APR-2011  Type: N  Check: 6421  ..

       1  ggagatgcaa cgctctcctc aggttgtggt tgaaccggat ttgtatgctg
      51  tacaccctgc tcgtggtgta tagtggatcc tctactctgt acatcttgaa
     101  atagagggga ttttctatct cccagatata cacgccattc tctgcctgac
     151  gtgcagtgat gatttcccct gtgcgtgaat ccatggcccg tgcagtctat
     201  gtggaagtag atggagcaac cgcactgaag atcaatcctc cttctcctga
     251  ttgccctcct cttggctcgt ctgtgtgctt tcttgataga ggggggctgt
     301  gagggtgatg aagaccgcat tctttagagt ccagttcctg agggaggtgt
     351  tttcctcctt gttcaggaaa tctttatagc tggcaccctc accaggattg
     401  cagagcacga ttgctgggat cccaccttta atttgaactg gcttgccgta
     451  cttgcaattt gactgccaat ccttttgggc cccgagtagt tctttccagt
     501  gctttagctt taggtaatgc ggagcgacgt catcaatgac gttataatcc
     551  acatcgttcg agaacactcg ggcattgaag tcaaggtgac cgctgagata
     601  attatgtgga cccaacgcac gagcccacat cgtcttcccc gtcctcgagt
     651  caccttcaac aatcaaactt actggtctta ctggccgcgc agcgggactg
     701  ctcccaaaat aatcatccgc ccactcttgc atctcgtcgg gcacgttagt
     751  gaaagaggag agttgaaacg gaggaaccca tggctccgga gcctttgcga
     801  atatcctttc gaggttggag cggatgttat gattctgcag gacaaagtct
     851  tttggctgct cctcctttaa cacccgcatg gcagattcaa cagaatctgc
     901  atttaacgcc ttggcatatg aatcattagc agactgctgg cctcctctag
     951  cagatctgcc gtcgatctgg aattctcccc attcaactgt gtctccgtcc
    1001  ttctcgagat aggacttgac gtcggagctg gatttagctc cctgtatgtt
    1051  tggatggaaa tgtgctgacc gggttgggga gaccagatcg aagaatctgc
    1101  tattcgtgca cctgtatttg ccctcgaact ggataagtac atggagatga
    1151  ggctcaccat tttcatgcag ttctcggcag atcttgatga acttcttgtt
    1201  caccggagtg gataggtttt taatttggga aagtgcttct tctttgctaa
    1251  gagagcactt tggatatgtt aggaaatagt ttttctgatt tacctggaaa
    1301  cgcttcgatg gcatttttgt aataagaggg gtgtgtacca attgagctct
    1351  ctctcaaaac tccatatgaa ttggtacaca ggtacacaat atatagtaga
    1401  accctcattc accgatttgc accaccgtgg cggccatccg ctctaatatt
    1451  accggatggc cgcgcgattt ttcccccccc tacgtggagc tctggtggcc
    1501  gcgcgatccc ctcgcgcttt tcctttaatt tgaattaaag cggacagctt
    1551  tcgtcttgtc caatgatatt gcgcctgtcg catctagata tctgcaacaa
    1601  cttgggccct aagttgttgg ccggttataa attaaaggtt tattgggcca
    1651  cattctttaa gtcaaaatgc ctaagcggga agccccatgg cgttctatg