Sequence of DPV Brassica yellows virus
Brassica yellows virus isolate BrYV-BBJ, complete genome.
ACC No: HQ388349
Dated: 2011-12-07 | Length: 5666 | CRC: -1313371587
ID HQ388349; SV 1; linear; genomic RNA; STD; VRL; 5666 BP.
XX
AC HQ388349;
XX
DT 23-SEP-2011 (Rel. 110, Created)
DT 07-DEC-2011 (Rel. 111, Last updated, Version 4)
XX
DE Brassica yellows virus isolate BrYV-BBJ, complete genome.
XX
KW .
XX
OS Brassica yellows virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Polerovirus.
XX
RN [1]
RP 1-5666
RX PUBMED; 21874520.
RA Xiang H.Y., Dong S.W., Shang Q.X., Zhou C.J., Li D.W., Yu J.L., Han C.G.;
RT "Molecular characterization of two genotypes of a new polerovirus infecting
RT brassicas in China";
RL Arch. Virol. 156(12):2251-2255(2011).
XX
RN [2]
RP 1-5666
RA Han C.G.;
RT ;
RL Submitted (30-SEP-2010) to the INSDC.
RL Plant Pathology, China Agricultural University, No. 2 Yuanmingyuan West
RL Road, Haidian District, Beijing 100193, China
XX
FH Key Location/Qualifiers
FH
FT source 1. .5666
FT /organism="Brassica yellows virus"
FT /host="Brassica napus var. napobrassica"
FT /isolate="BrYV-BBJ"
FT /mol_type="genomic RNA"
FT /country="China:Beijing"
FT /collection_date="26-Sep-2008"
FT /note="genotype: B"
FT /db_xref="taxon:1046403"
FT 5'UTR 1. .31
FT CDS 32. .781
FT /codon_start=1
FT /product="P0"
FT /note="ORF0"
FT /db_xref="InterPro:IPR006755"
FT /db_xref="UniProtKB/TrEMBL:G3E227"
FT /protein_id="ADW41589.1"
FT /translation="MQFIAHDNFHTLEVRKVRYLHPKQVSFLLAGLLLNIKQFVKAIKE
FT RNNAFKIDILLRSLLYQLPLYLGDHIHDDVRKSILVPEPELCAWFSLQTGYAPASTSGR
FT VNLYVPGTKTSRRRIIQRSLASDFSEKFKRFPECLFVSLEHFRRFLSIWTRNAEERLFS
FT GCREIPVGSHTLVELANLGELLRVMVAGEEFHNPRLLSRLAVHCHKIYGEDGFISFWRI
FT ANLDYLDCFLTPEEILFSSSVYTEMFV"
FT CDS join(174. .1544,1544. .3268)
FT /codon_start=1
FT /ribosomal_slippage
FT /product="P1-2 fusion protein"
FT /note="ORF1-2"
FT /db_xref="GOA:G3E228"
FT /db_xref="InterPro:IPR000382"
FT /db_xref="InterPro:IPR001795"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="InterPro:IPR009003"
FT /db_xref="UniProtKB/TrEMBL:G3E228"
FT /protein_id="ADW41591.1"
FT /translation="MHSKLIFCFVLCSTSFLSTSETTSTMMSGSPYLFLNQSFVPGSPY
FT KRDMLPPPPQVVLTYTSQEPRPLVEESYNDLLRAISQKSSSDFQNAYSLALNISGDFCQ
FT SGLETLKNASFLAVEKFLWGLTRLWSSLILASFYALWWLVRNFTTPVFCLALLYTVTRF
FT MAKMVSFLFGGLPIWIISIVFSLLKKSFSALRSTPKCLYEKAIDGFQSFTIPQSPPKSC
FT VIPITHASGNHAGYASCVKLYNGENALLTATHVLRDSNNAVAVSAKGLKARIPLAEFKT
FT IAKSDKGDVTLLRGPPNWEGLLGCKAANVITADNLAKCKASIYSFERDGWVGGYAEIVG
FT SEGTDVMVLSHTEGGHSGSPYFNGKTILGVHSGASATGNYNLMAPIPSIPGLTSPTYVF
FT ETTAPQGRVFAQEDIAEIEKLYSKARQMIDFKSKTGNNWADLEEDEDIFYESKEDLSGK
FT RSARRRPRNKRRKQLHPRDKQRRWERDDGENNLVSGGKNKSRENREESGRGDLRESDEN
FT SKTPPQKSFKETAGEFERYFSSLYSWEIPTSTREVPGFRHCGKLPQYYHPKQKEESSWG
FT KTLVGNHPALGEKTSGFGWPKFGPEAELKSLRLQASRWLDRAQSAEIPSDAERERVIQK
FT TADVYHPCQTNGPAATRGGTLTWNNFMIDFKQAVFSLEFDAGIGVPYIAYGKPTHRGWV
FT EDPKLLPVLAQLTFIRLQKMLEVNFEDMGPEELIQNGLCDPIRLFVKGEPHKQAKLDEG
FT RYRLIMSVSPVDQLVARVLFQNQNKREIALWRAVPSKPGFGLSTDEQVLDFVKGLARQV
FT GTTTSEVITNWKDYLTPTDCSGFDWSVADWMLQDDMIVRNRLTIDLNPATERLRSCWLR
FT CISNSVLCLSDGTLLAQTHPGVQKSGSYNTSSSNSRIRVMAAFHTGAAWAMAMGDDALE
FT SNPADLAAYKRLGFKVEVSGQLEFCSHIFRAPDLALPVNENKMIYKLIYGYNPGSGNAE
FT VVANYLAACFSVLNELRHDPASVELLYSWLVDPVLPQKISRE"
FT CDS 174. .1985
FT /codon_start=1
FT /product="P1"
FT /note="ORF1"
FT /db_xref="GOA:G3E229"
FT /db_xref="InterPro:IPR000382"
FT /db_xref="InterPro:IPR009003"
FT /db_xref="InterPro:IPR018019"
FT /db_xref="UniProtKB/TrEMBL:G3E229"
FT /protein_id="ADW41590.1"
FT /translation="MHSKLIFCFVLCSTSFLSTSETTSTMMSGSPYLFLNQSFVPGSPY
FT KRDMLPPPPQVVLTYTSQEPRPLVEESYNDLLRAISQKSSSDFQNAYSLALNISGDFCQ
FT SGLETLKNASFLAVEKFLWGLTRLWSSLILASFYALWWLVRNFTTPVFCLALLYTVTRF
FT MAKMVSFLFGGLPIWIISIVFSLLKKSFSALRSTPKCLYEKAIDGFQSFTIPQSPPKSC
FT VIPITHASGNHAGYASCVKLYNGENALLTATHVLRDSNNAVAVSAKGLKARIPLAEFKT
FT IAKSDKGDVTLLRGPPNWEGLLGCKAANVITADNLAKCKASIYSFERDGWVGGYAEIVG
FT SEGTDVMVLSHTEGGHSGSPYFNGKTILGVHSGASATGNYNLMAPIPSIPGLTSPTYVF
FT ETTAPQGRVFAQEDIAEIEKLYSKARQMIDFKSKTGNNWADLEEDEDIFYESKEDLSGN
FT GVRGADRGTNGESSSTPATNNVDGKEMMEKIISSLVGKINLEKIEKKVVEEISAKAMKT
FT PRPRRRRASRKQPESSKDISPRSTAGRYQPPHVRSPASATAVSCPNTTTPSKRKNQAGG
FT RHSSGTIPHWVRKQAASAGQNLAPKRN"
FT misc_feature 3269. .3471
FT /note="intergenic NCR"
FT CDS 3472. .4080
FT /codon_start=1
FT /product="coat protein"
FT /note="ORF3"
FT /db_xref="GOA:G3E230"
FT /db_xref="InterPro:IPR001517"
FT /db_xref="UniProtKB/TrEMBL:G3E230"
FT /protein_id="ADW41592.1"
FT /translation="MNTVVGRRTINGRRRPRRQTRRIQRNQPVVVVQASRTTQRRPRRR
FT RRGNNRTGRTVPTRGAGSSETFVFSKDNLAGSSSGAITFGPSLSDCPAFSNGILKAYHE
FT YKISMVILEFVSEASSQNSGSIAYELDPHCKLNSLSSTINKFGITKPGRKTFTASFING
FT IEWHDVAEDQFRILYKGNGSSSIAGSFRITIKCQFHNPK"
FT CDS 3503. .4030
FT /codon_start=1
FT /product="movement protein"
FT /note="ORF4"
FT /db_xref="InterPro:IPR001964"
FT /db_xref="UniProtKB/TrEMBL:G3E231"
FT /protein_id="ADW41593.1"
FT /translation="MEEDDHAGKQGAFSEISQWLWSKPLGQHNADLDDDEEVTTGQEEL
FT FLPEEQVQARHLFSQKTISREVPAEQSRSGRVYQTARHSLMEYSRPTMSIKSQWSFWSS
FT SPKPLPKIPVPSLTSWTHTVNSIHSPQRLTNSGSQSPGGKRLQRLSSTGSNGMTLPRTN
FT SGSSTKAMVLHR"
FT CDS 4267. .5481
FT /codon_start=1
FT /product="read-through protein"
FT /note="ORF5"
FT /db_xref="GOA:G3E232"
FT /db_xref="InterPro:IPR002929"
FT /db_xref="UniProtKB/TrEMBL:G3E232"
FT /protein_id="ADW41594.1"
FT /translation="MNWTNVDARWYSSNNVKAVPMYVFPVPEGTWSVEISTEGYQPTAS
FT TTNPNKGKVDGMIAYSDDQSEVWNVGINQNCNITNLKADNSWKYGHPDMEINNCHFNQG
FT QVLEMDGTISFRVETTGSDASFFQVGPAVQKQSKYNYAVSYGAWTDRDMELGLISVSLD
FT EKDGSRGSAMKRPRREGHSKAVSTWETINLPEKENSERSITSQRQDSKTQPQQGFSDAG
FT SEDNKEWDFTPGTRMFLPEDFEEPREVQNDDLLRDRGIVVDPSLLEIPDSPPPRADHKD
FT TDPWAEVERYKSSHKALVGEDTRSRQSSLTGGSLAGGSLRKLKPVTPDEYEQAKLKDES
FT RLQHEQDLAEYHRSLKRPSSALIPRDDGELMEMDPSQRKLMKNAGVNLDKYGRPIKKGF
FT LSFRK"
XX
SQ Sequence 5666 BP; 1635 A; 1404 C; 1333 G; 1294 T; 0 other;
hq388349 Length: 5666 07-DEC-2011 Type: N Check: 5315 ..
1 acaaaagaaa ccaggtggga atcctaagtt gatgcaattc attgctcacg
51 ataactttca cactctagaa gtcaggaaag tcagatacct ccacccaaaa
101 caagtatcgt ttcttttagc aggtttattg cttaacatca aacaatttgt
151 aaaagcaatc aaagaacgca acaatgcatt caaaattgat attttgcttc
201 gttctctgct ctaccagctt cctctctacc tcggagacca catccacgat
251 gatgtcagga agtccatact tgttcctgaa ccagagcttt gtgcctggtt
301 ctccttacaa acgggatatg ctcccgcctc cacctcaggt cgtgttaact
351 tatacgtccc aggaaccaag acctctcgta gaagaatcat acaacgatct
401 cttgcgagcg atttctcaga aaagttcaag cgatttccag aatgcttatt
451 cgttagcctt gaacatttcc ggcgatttct gtcaatctgg actagaaacg
501 ctgaagaacg cctcttttct ggctgtcgag aaattcctgt ggggtctcac
551 acgcttgtgg agctcgctaa tcttggcgag cttctacgcg ttatggtggc
601 tggtgaggaa tttcacaacc cccgtcttct gtctcgcctt gctgtacact
651 gtcacaagat ttatggcgaa gatggtttca tttctttttg gaggattgcc
701 aatctggatt atctcgattg ttttctcact cctgaagaaa tccttttcag
751 ctcttcggtc tacaccgaaa tgtttgtatg aaaaggctat agacgggttt
801 cagagcttca ctatcccgca gagccccccc aaatcttgcg tgattcctat
851 cacccacgca agcggaaacc acgctggtta cgccagctgt gtaaagctgt
901 acaatggaga aaacgcgttg ttaacagcga ctcacgttct acgtgatagc
951 aacaatgcag tagctgtttc cgccaaaggg cttaaagctc ggattccact
1001 cgctgaattc aaaacaattg cgaaatccga caaaggtgat gttaccctcc
1051 tccgcggccc ccccaactgg gaaggactgt taggctgcaa ggcagccaac
1101 gtcataacgg ccgacaacct ggcgaaatgc aaagcatcca tatactcttt
1151 tgagagagat ggctgggttg gtggttatgc cgaaatcgtc ggctctgaag
1201 ggaccgatgt tatggtcctg agccacacgg aaggaggaca ctccggaagc
1251 ccctacttta atggtaaaac cattctaggg gttcattcag gtgccagtgc
1301 aactggtaat tacaatttga tggcaccaat cccgtcaatt cccggactca
1351 caagccccac ttatgtgttt gaaactactg ctccgcaagg acgagttttc
1401 gcacaagagg acattgctga gatagaaaag ctctattcca aagccagaca
1451 aatgatcgat ttcaaatcta agactggaaa taattgggct gatctagagg
1501 aagacgaaga catcttctat gaaagcaaag aagatctttc gggaaacgga
1551 gtgcgcggcg ccgaccgcgg aacaaacggc gaaagcagct ccacccccgc
1601 gacaaacaac gtcgatggga aagagatgat ggagaaaata atctcgtctc
1651 tggtgggaaa aataaatctc gagaaaatcg agaagaaagt ggtcgaggag
1701 atctccgcga aagcgatgaa aactccaaga ccccgccgca gaagagcttc
1751 aaggaaacag ccggagagtt cgaaagatat ttctcctcgc tctacagctg
1801 ggagatacca acctccacac gtgaggtccc cggcttccgc cactgcggta
1851 agctgcccca atactaccac cccaagcaaa aggaagaatc aagctggggg
1901 aagacactcg tcgggaacca tcccgcactg ggtgagaaaa caagcggctt
1951 cggctggcca aaatttggcc ccgaagcgga actaaagagc ctgcgattgc
2001 aggcttcaag gtggctggac cgcgcccagt ccgcagaaat accctctgac
2051 gctgagaggg agcgtgtgat acaaaagacc gcagatgttt accatccttg
2101 ccaaactaat ggacctgcgg caacccgagg aggaacactg acctggaaca
2151 atttcatgat cgatttcaaa caggctgtgt tctcgctaga gttcgatgcc
2201 ggaataggcg tcccctatat tgcctatggc aagcccacac accgtgggtg
2251 ggtagaagat ccaaagctcc tcccagtcct agctcaattg accttcatcc
2301 gactacagaa gatgttggag gtcaatttcg aggatatggg accagaggag
2351 ttgatccaga acggtttgtg cgaccccatc cgattattcg tgaaaggtga
2401 gccgcataaa caagcgaagc tcgatgaagg ccgctaccgc ctcatcatga
2451 gcgtttcccc cgtggatcaa ctggtagccc gggttctgtt tcaaaaccag
2501 aacaagcggg aaattgccct atggagggcc gtccccagta aacccggttt
2551 tggcttgtct acggatgagc aagtgctgga ctttgtgaaa ggtttggccc
2601 gtcaagttgg aactacaacg tctgaagtta ttacaaactg gaaagattac
2651 ttgacgccaa cggattgctc cggcttcgac tggagtgttg cggactggat
2701 gctccaagac gacatgatcg tccgcaatag acttaccatc gacctcaacc
2751 ctgcaacaga aagattaaga tcctgttggt tgagatgcat ctcaaactca
2801 gtgctatgcc tgagtgatgg taccctttta gcccaaaccc atccgggcgt
2851 tcagaaaagt gggagttata acacatcaag ctccaactcc cggatcagag
2901 ttatggccgc ctttcacaca ggcgctgcct gggctatggc gatgggcgat
2951 gacgccctcg agtccaatcc cgctgaccta gcagcgtaca aaagactagg
3001 attcaaggta gaggtttccg gacaactgga attctgctct cacatcttta
3051 gagcgccgga cctcgccctc cctgtgaacg aaaacaagat gatctataaa
3101 ttgatctatg gctacaaccc agggagcgga aacgctgagg tagttgcgaa
3151 ctacttggcc gcttgtttct cagttctgaa cgagttgcgg catgatccgg
3201 cgtccgttga acttctttac tcgtggttag tcgacccagt gctaccacaa
3251 aagatatcca gggagtaaag aagcaaacaa gttagcttac attgaaattc
3301 taaagagttt tctgcaacag taagagactt aagtaaaacc actcaaagat
3351 acaacggatt acaaattcct agcaggtttc accgcaggct tcgtttcatc
3401 gataccaata tccgtgatca gtatctattt catctaccta agaatctcta
3451 aacacgtacg cgaaattgtt aatgaatacg gtcgtgggta gaagaacaat
3501 caatggaaga agacgaccac gcaggcaaac aaggcgcatt cagcgaaatc
3551 agccagtggt tgtggtccaa gcctctcgga caacacaacg ccgacctaga
3601 cgacgacgaa gaggtaacaa ccggacagga agaactgttc ctaccagagg
3651 agcaggttca agcgagacat ttgttttctc aaaagacaat ctcgcgggaa
3701 gttccagcgg agcaatcacg ttcgggccga gtctatcaga ctgcccggca
3751 ttctctaatg gaatactcaa ggcctaccat gagtataaaa tctcaatggt
3801 cattctggag ttcgtctccg aagcctcttc ccaaaattcc ggttccatcg
3851 cttacgagct ggacccacac tgtaaactca attcactctc ctcaacgatt
3901 aacaaattcg ggatcacaaa gcccgggagg aaaacgttta cagcgtcttt
3951 catcaacggg atcgaatggc atgacgttgc cgaggaccaa ttcaggatcc
4001 tctacaaagg caatggttct tcatcgatag ctggttcttt tagaatcacc
4051 ataaagtgcc aattccataa tcccaaatag gtagacgagg aacctagccc
4101 cagtccaggg ccaagccccc aaccaacacc aacaccaact aaagagtaca
4151 gatggatagc ttacactggc gtctgtagaa ctctgatcaa agcccaaaca
4201 acggacgatt ctatttatct gtatgatttg ggctcccaac gcctccggta
4251 cattgagaat gaaaacatga actggaccaa cgtggacgcc cgatggtatt
4301 caagtaataa cgtcaaagcg gttcccatgt atgtgtttcc agtcccggaa
4351 ggaacgtggt cggtcgagat atcaacggaa ggttatcaac ctacagcaag
4401 taccaccaac cccaacaagg gaaaagttga tggcatgatt gcctattctg
4451 atgatcaatc agaagtgtgg aacgttggaa taaatcaaaa ttgtaacatc
4501 accaacctga aagcagacaa ctcatggaag tatgggcacc cagatatgga
4551 aattaacaat tgccacttca atcagggaca ggttctagag atggatggta
4601 caatctcctt tcgcgtagag accaccggtt cagacgcatc gttcttccag
4651 gtcggtcccg ctgttcaaaa acagtcgaag tacaactacg ccgtttcata
4701 cggagcgtgg acagatcgtg atatggagtt gggcttgatt tctgtttctt
4751 tggatgagaa agacggatca agaggttccg ctatgaaaag acctcgtcga
4801 gaaggacact cgaaggcagt ctcaacctgg gagactataa acttaccgga
4851 gaaggaaaac tccgagagat ccataaccag tcaaagacaa gactctaaaa
4901 ctcaacctca acaaggtttc tcagatgctg gttctgagga caacaaggaa
4951 tgggatttca cacccgggac tcgaatgttt cttcctgaag acttcgagga
5001 accccgtgag gttcagaatg acgatcttct cagagataga ggaattgtag
5051 tagacccctc cttgttggaa atacctgact cacctcctcc gagagcggac
5101 cataaggaca cagatccttg ggctgaggtc gaaagataca aatcttccca
5151 taaagccctt gtcggcgagg acacgcgttc ccgacaatca tccttaacag
5201 gaggttcgct tgctggcggc agtctcagaa aactgaagcc ggttacaccg
5251 gacgagtatg agcaggcgaa gctgaaagat gagtcgaggc tccagcacga
5301 acaggaccta gctgagtacc acagaagttt gaaaagacct tcaagcgcgt
5351 taataccacg tgatgatggt gaactcatgg aaatggatcc ttctcaacgt
5401 aagttgatga aaaacgctgg agtcaacctt gataaatatg gtagaccaat
5451 taagaaaggt ttcctctctt tcaggaaata gtttccacag tactcaactg
5501 tgctcgttgg tagtgatacg aggcgaaaat caaaactacc cttgtctagc
5551 tttattaata tttagctaat aaagtcaagc cagagacatt aaactggaac
5601 gactccgctt cgcgggtagg caacgagtgt tctacgctgg gagaaatccc
5651 tacggcactt cggtgt