Sequence of DPV Sweet potato leaf curl virus
Sweet potato leaf curl virus isolate SPLCV-US[BR:PA:08], complete genome.
ACC No: HQ393450
Dated: 2012-11-14 | Length: 2829 | CRC: -703660688
ID HQ393450; SV 1; circular; genomic DNA; STD; VRL; 2829 BP.
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AC HQ393450;
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DT 27-MAR-2011 (Rel. 108, Created)
DT 14-NOV-2012 (Rel. 114, Last updated, Version 4)
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DE Sweet potato leaf curl virus isolate SPLCV-US[BR:PA:08], complete genome.
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KW .
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OS Sweet potato leaf curl virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RC Publication Status: Online-Only
RP 1-2829
RX PUBMED; 23082767.
RA Albuquerque L.C., Inoue-Nagata A.K., Pinheiro B., Resende R.O.,
RA Moriones E., Navas-Castillo J.;
RT "Genetic diversity and recombination analysis of sweepoviruses from
RT Brazil";
RL Virol J 9:241-241(2012).
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RN [2]
RP 1-2829
RA Albuquerque L.C., Inoue-Nagata A.K., Pinheiro B., Resende R.O.,
RA Ribeiro S.G., Moriones E., Navas-Castillo J.;
RT "Genetic diversity by extensive recombination in the complex of monopartite
RT begomoviruses infecting sweet potato in Brazil";
RL Unpublished.
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RN [3]
RP 1-2829
RA Albuquerque L.C., Inoue-Nagata A.K., Pinheiro B., Resende R.O.,
RA Ribeiro S.G., Navas-Castillo J.;
RT ;
RL Submitted (11-OCT-2010) to the INSDC.
RL Virology, Embrapa Vegetables, Km 09, BR060, Brasilia, DF 70359-970, Brazil
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FH Key Location/Qualifiers
FH
FT source 1. .2829
FT /organism="Sweet potato leaf curl virus"
FT /host="Ipomoea batatas"
FT /strain="USA"
FT /isolate="SPLCV-US[BR:PA:08]"
FT /mol_type="genomic DNA"
FT /country="Brazil:Para"
FT /lat_lon="7.04 S 51.23 W"
FT /collected_by="Joao Bosco Silva"
FT /collection_date="2008"
FT /clone="293Eco18"
FT /db_xref="taxon:100755"
FT CDS 126. .470
FT /codon_start=1
FT /product="V2"
FT /protein_id="ADZ96519.1"
FT /translation="MEQLWDPLQNPLPDTLYGFRCMLSVKYLQSILKKYEPGTLGFELC
FT SELIRIFRVRQYDRANSRFAEISSIWGETGKTEAELRDSYRALHWECCPNCCPKLCPGF
FT KRRPDEEKEG"
FT CDS 295. .1059
FT /codon_start=1
FT /product="V1"
FT /note="CP"
FT /protein_id="ADZ96520.1"
FT /translation="MTGRIPVSRRFHPYGGRPVRRRLNFETAIVPYTGNAVPIAARSYV
FT PVSRGVRMKRRRGDRIPKGCVGPCKVQDYEFKMDVPHTGTFVCVSDFTRGTGLTHRLGK
FT RVCVKSMGIDGKVWMDDNVAKRDHTNIITYWLIRDRRPNKDPLNFGQIFTTYDNEPTTA
FT KIRMDLRDRMQVLKKFSVTVSGGPYSHKEQALIRKFFKGLYNHVTYNHKEEAKYENQLE
FT NALMLYSASSHASNPVYQTLRCRAYFYDSHNN"
FT CDS complement(1075. .1509)
FT /codon_start=1
FT /product="C3"
FT /note="REn"
FT /protein_id="ADZ96521.1"
FT /translation="MDSRTGESLSHAQTTRALEFDTNPMSVGRTAPFHLRIMYVHESTQ
FT GRTILKFQLRVNYRERRQLGFHKIFLQFRIVTTRLTGAIHSWTGILERLKWRICNELAN
FT LGFFSLVNLVFVVRYLPRVCSWIDEVDTVDCNDDVKILLY"
FT CDS complement(1226. .1672)
FT /codon_start=1
FT /product="C2"
FT /note="Trap"
FT /protein_id="ADZ96522.1"
FT /translation="MSNPLSGYKRKCPIQEPLHTEAKKAKRKVPEQRTRIVWKGCGCSA
FT FITTTCKYQHGFTHRGITKSCSDYESTRIRHQPHVCGSDCTVPSQNYVCPREHTGENHP
FT QIPAEGQLQGKEATGIPQDLPPIPDRDDPSNWCYSQLDWYFGTP"
FT CDS complement(1581. .2675)
FT /codon_start=1
FT /product="C1"
FT /note="Rep"
FT /protein_id="ADZ96523.1"
FT /translation="MAPPKRFKIQAKNYFITYPRCSLSKEDCLAQLLNIQTPTNKKYIH
FT VARELHEDGEPHLHVLVQFEGKFVCTNSRFFDLVSPNRSNHFHPNIQGAKSSSDVKSYV
FT DKDGDTITWGEFQVDGRSARGGQQTANDAAAEALNAGSKEAALQIIREKLPEKYLFQFH
FT NLVSNLDRIFSPPPSVYSSPFSSSSFNAVPDIISDWAAENVMDSAARPDRPISIVIEGP
FT SRIGKTVWARSLGPHNYLCGHLDLSPKVYSNSAWYNVIDDVNPQYLKHFKEFMGAQKDW
FT QSNCKYGKPVQIKGGIPTIFLCNPGEGSSFKLWLDKPEQGALKNWATANAIFCDVQSPF
FT WVQEEVSHSGATAHRGEEGQEESS"
FT CDS complement(2261. .2518)
FT /codon_start=1
FT /product="C4"
FT /protein_id="ADZ96524.1"
FT /translation="MGNLTSMCWCSSKANSSAQIADSSIWSHRTDRITFTPTSRELNPR
FT PMSSPTLTRTGIPSPGVNSRSTADLLEEASRLLMTQPQRL"
XX
SQ Sequence 2829 BP; 738 A; 604 C; 686 G; 801 T; 0 other;
hq393450 Length: 2829 14-NOV-2012 Type: N Check: 9195 ..
1 accggtgccc gccgcgccct tttaaagtgg gccccacaat gggaccacgc
51 gtctttgccg tactgtcttt aatgattact ttgctttata aggaccaatc
101 aggtttccgt gcttgggcgc caagaatgga gcagttgtgg gaccctttgc
151 agaacccact cccggatact ttatacggtt ttaggtgtat gctatccgta
201 aaatacttgc agagtatttt gaagaaatac gagccaggaa ccttagggtt
251 cgagctctgt tcggagttaa tccgtatatt cagggtcagg cagtatgaca
301 gggcgaattc ccgtttcgcg gagatttcat ccatatgggg ggagaccggt
351 aagacggagg ctgaacttcg agacagctat cgtgccctac actgggaatg
401 ctgtcccaat tgctgcccga agctatgtcc cggtttcaag aggcgtccgg
451 atgaagagaa ggaggggtga ccgcatcccg aagggatgtg tcggtccctg
501 taaggtccag gactatgagt tcaagatgga cgttccccac acgggaacgt
551 ttgtctgtgt ctcggatttt actaggggaa ctgggcttac ccatcgcctg
601 ggtaagcgtg tttgtgtgaa gtccatgggt atagatggta aggtctggat
651 ggatgacaat gtggccaaga gagatcacac caatatcatc acgtattggc
701 tgattcgtga caggaggccc aataaggatc cgcttaactt tggccagatc
751 ttcacgacgt acgacaatga gcccactact gctaagatcc gaatggatct
801 gagagataga atgcaggtct tgaagaagtt ctcggttaca gtttcaggag
851 gtccatacag ccacaaggag caggccttaa ttaggaagtt ttttaagggt
901 ttgtataatc atgttactta caatcacaag gaagaagcta agtatgagaa
951 tcaattagag aatgcactta tgttgtatag tgctagtagt catgctagta
1001 atcccgtgta tcagaccctg cgttgcaggg cttatttcta tgattcgcac
1051 aataattaat aaaattatat tttattaata gagtaatatc tttacatcat
1101 cattacaatc tacagtatct acttcatcta tccaagaaca tactcttgga
1151 agatatctaa caacgaaaac taaattaact aaactaaaaa atcctaaatt
1201 tgctaattca ttacatatac gccatttaag gcgttccaaa ataccagtcc
1251 aactgtgaat agcaccagtt agacgggtcg tcacgatccg gaattggagg
1301 aagatcttgt ggaatcccag ttgcctcctt tccctgtagt tgaccctcag
1351 ctggaatttg aggatggttc tcccctgtgt gctctcgtgg acatacataa
1401 ttctgagatg gaacggtgca gtccgaccca cagacatggg gttggtgtcg
1451 aattctagtg ctctcgtagt ctgagcatga cttagtgatt cccctgtgcg
1501 tgaatccatg ctggtacttg caggttgtgg tgatgaaggc tgaacagccg
1551 caacccttcc acactatcct cgtcctctgt tcaggaactt tcctcttggc
1601 cttcttcgcc tctgtgtgca gtggctcctg aatgggacac ttcctcttgt
1651 acccagaaag gggattggac atcgcagaat atagcgtttg ctgttgccca
1701 atttttgagt gctccttgct ctggtttgtc caaccagagt ttaaatgagg
1751 agccctctcc tggattgcag aggaagatag tgggaattcc acctttaatt
1801 tgaactggct ttccgtattt acagttggat tgccagtcct tctgggcccc
1851 catgaattcc ttaaagtgct ttaggtattg ggggttgacg tcatcaatga
1901 cgttgtacca agcactgttg ctgtatactt tagggcttag atctaaatgc
1951 ccacacaaat aattatgagg ccccaaagac ctggcccata ctgttttgcc
2001 tattctgctt gggccttcaa taacaatgga tatgggtcta tccggccgcg
2051 cagcggaatc catgacattt tcagcggccc agtcgctgat aatgtcagga
2101 acggcattga aagaagaaga tgaaaaagga gaagaatata cagaaggagg
2151 aggagaaaaa atcctatcta aattactaac taaattgtga aattgaaaca
2201 aatatttttc aggaagtttc tccctaatta tttgcaacgc agcttcttta
2251 gaacctgcgt ttagagcctc tgcggctgcg tcattagcag tctgctggcc
2301 tcctctagca gatctgccgt cgacctggaa ttcaccccag gtgatggtat
2351 ccccgtcctt gtcaacgtag gacttgacat cggacgagga tttagctccc
2401 tggatgttgg ggtgaaagtg attcgatctg ttcggtgaga ccagatcgaa
2451 gaatctgcta tttgtgcaga cgaatttgcc ttcgaactgc accaacacat
2501 ggaggtgagg ttccccatcc tcgtgcagtt ctcttgctac gtgtatgtat
2551 tttttgttgg tgggtgtttg gatatttagg agttgggcta ggcagtcctc
2601 ttttgagaga gaacagcgtg gataagtaat aaaataattt ttggcctgaa
2651 ttttaaaacg ttttggagga gccatttgga gacacgcata agttcaaatg
2701 aattggagac tggagacaat atatagtatg tctccaaatg gcattctggt
2751 aatttagaag atccttttag ctttaattca aattccgaca actctgggtc
2801 caccaaaagg cgggcaccgt attaatatt