Sequence of DPV Sweet potato leaf curl virus
Sweet potato leaf curl virus isolate SPLCV-PE[BR:PF:09], complete genome.
ACC No: HQ393461
Dated: 2012-11-14 | Length: 2829 | CRC: -598773814
ID HQ393461; SV 1; circular; genomic DNA; STD; VRL; 2829 BP.
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AC HQ393461;
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DT 27-MAR-2011 (Rel. 108, Created)
DT 14-NOV-2012 (Rel. 114, Last updated, Version 4)
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DE Sweet potato leaf curl virus isolate SPLCV-PE[BR:PF:09], complete genome.
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KW .
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OS Sweet potato leaf curl virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RC Publication Status: Online-Only
RP 1-2829
RX PUBMED; 23082767.
RA Albuquerque L.C., Inoue-Nagata A.K., Pinheiro B., Resende R.O.,
RA Moriones E., Navas-Castillo J.;
RT "Genetic diversity and recombination analysis of sweepoviruses from
RT Brazil";
RL Virol J 9:241-241(2012).
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RN [2]
RP 1-2829
RA Albuquerque L.C., Inoue-Nagata A.K., Pinheiro B., Resende R.O.,
RA Ribeiro S.G., Moriones E., Navas-Castillo J.;
RT "Genetic diversity by extensive recombination in the complex of monopartite
RT begomoviruses infecting sweet potato in Brazil";
RL Unpublished.
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RN [3]
RP 1-2829
RA Albuquerque L.C., Inoue-Nagata A.K., Pinheiro B., Resende R.O.,
RA Ribeiro S.G., Navas-Castillo J.;
RT ;
RL Submitted (11-OCT-2010) to the INSDC.
RL Virology, Embrapa Vegetables, Km 09, BR060, Brasilia, DF 70359-970, Brazil
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FH Key Location/Qualifiers
FH
FT source 1. .2829
FT /organism="Sweet potato leaf curl virus"
FT /host="Ipomoea batatas"
FT /strain="Pernambuco"
FT /isolate="SPLCV-PE[BR:PF:09]"
FT /mol_type="genomic DNA"
FT /country="Brazil:Paraiba"
FT /lat_lon="7.24 S 35.06 W"
FT /collected_by="Simone G. Ribeiro"
FT /collection_date="2009"
FT /clone="PB82Sac32"
FT /db_xref="taxon:100755"
FT CDS 99. .470
FT /codon_start=1
FT /product="V2"
FT /protein_id="ADZ96585.1"
FT /translation="MLFQSWSPSMAELWDPLQNPLPDTLYGFRCMLSVKYLQSILKKYE
FT PGTLGFELCSELIRIFRVRQYDRANARYAEISSVWGETGKTEAELRDSYRALHWECCPN
FT CCPKLCPGFKRRPDEEKEG"
FT CDS 295. .1059
FT /codon_start=1
FT /product="V1"
FT /note="CP"
FT /protein_id="ADZ96586.1"
FT /translation="MTGRMRVTQRFHPYGGRPVRRRLNFETAIVPYTGNAVPIAARSYV
FT PVSRGVRMKRKRGDRIPKGCVGPCKVQDYEFKMDVPHRGTFVCVSDFTRGTGLTHRLGK
FT RVCVKSMGIDGKVWMDDNVAKRDHTNIITYWLIRDRRPNKDPLNFDQVFTMYDNEPTTA
FT KIRMDLRDRMQVLKKFSVTVSGGPYNHKEQALVRKFFKGLYNHVTYNHKEEANYENQLE
FT NALMLYSASSHASNPVYQTLRCRVYFYDSHNN"
FT CDS complement(1075. .1509)
FT /codon_start=1
FT /product="C3"
FT /note="REn"
FT /protein_id="ADZ96587.1"
FT /translation="MDSRTGESLNRAQTMRALEFDTNPMSAGRTAPFHLRLMYVHESAQ
FT GRTILKFQMRVNYRERKQLGFHKIFLQFRISTTRLTGAIHSWTGILERLKWRICNELAN
FT LGFLSLVNLVFVIRYLPRVCSWIDEVDTIDCTDDVKVLLY"
FT CDS complement(1226. .1672)
FT /codon_start=1
FT /product="C2"
FT /note="Trap"
FT /protein_id="ADZ96588.1"
FT /translation="MSNLPSGIKRKCPIQEPLHAAAKKDKRKVPETRTRIVWKGCGCSA
FT FITTTCKFQHGFTHRGITKSCSDYESTRIRHQPHVCGSDCTIPPETDVRPRERTGENHP
FT QIPNEGQLPGEETTWFPQDLPAIQDIDNPANWCYSQLDWYFGTP"
FT CDS complement(1581. .2675)
FT /codon_start=1
FT /product="C1"
FT /note="Rep"
FT /protein_id="ADZ96589.1"
FT /translation="MAPPKRFKIQAKNYFITYPHCSLSKEDCLAQLLNIQTPTNKKYIH
FT IAKELHEDGEPHLHVLVQFEGKFVCTNSRFFDLVSPTRSNHFHPNIQGAKSSSDVKSYV
FT DKDGDTLTWGEFQVDGRSARGGQQTANDAAAEALNAGSKEAALQIIREKLPEKYLFQYH
FT NLVSNLDRIFSPPPSVYSSPFSSSSFNAVPDIICDWAAENVMDSAARPDRPISIVIEGP
FT SRIGKTVWARSLGPHNYLCGHLDLSPKVYSNSAWYNVIDDVNPQYLKHFKEFMGAQKDW
FT QSNCKYGKPVQIKGGIPTIFLCNPGEGSSFKLWLDKPEQGALKNWATANAIFCDVQSPF
FT WNQEEVSHSGATARSSEEGQEESS"
FT CDS complement(2261. .2518)
FT /codon_start=1
FT /product="C4"
FT /protein_id="ADZ96590.1"
FT /translation="MGNLTSMCWCSSKVNSSAQIADSSTLCHQQGRITFTPTSRELNPR
FT PMSSPTLIRTGIPSPGVNSRSTADLLEEVSRLLTTQPQRR"
XX
SQ Sequence 2829 BP; 741 A; 581 C; 683 G; 824 T; 0 other;
hq393461 Length: 2829 14-NOV-2012 Type: N Check: 44 ..
1 accggtgccc gccgcgccct ttaaaagtgg gccccaccta attgacaacg
51 cgtcttttcc gtactctctt taatgatgac attgctttat aaggaccaat
101 gctgttccag tcttggtcgc caagtatggc tgaattgtgg gaccctttgc
151 agaacccact accagatact ttatacggtt ttagatgtat gctatccgta
201 aaatacttgc aaagtatttt gaaaaaatac gagccaggaa ccctagggtt
251 cgagctctgt tcggagttaa tccgtatctt cagggtcagg cagtatgaca
301 gggcgaatgc gcgttacgca gagatttcat ccgtatgggg ggagaccggt
351 aagacggagg ctgaacttcg agacagctat cgtgccctac actgggaatg
401 ctgtcccaat tgctgcccga agctatgtcc cggtttcaag aggcgtccgg
451 atgaagagaa agaggggtga ccgcatcccg aagggatgtg ttggtccctg
501 taaggtccag gactatgagt tcaagatgga cgttcctcac aggggaacgt
551 ttgtctgtgt ctcggatttt acaaggggga ctgggcttac ccatcgcctt
601 ggtaagcgtg tttgtgttaa gtcaatgggt atcgatggga aggtctggat
651 ggatgacaat gttgcgaaga gagatcacac caatatcatc acgtattggt
701 tgattcgtga caggaggccc aataaggatc cgctgaactt tgatcaagta
751 ttcaccatgt atgacaatga gcctactact gctaagattc gaatggatct
801 gagagataga atgcaggtgt tgaagaagtt ctcagttaca gtttcaggag
851 gtccatacaa tcataaggag caggcattag ttaggaagtt ttttaagggt
901 ttgtataatc atgtgactta taatcacaaa gaagaagcta actatgagaa
951 tcagttagaa aatgctctta tgctgtatag tgctagcagt catgctagta
1001 atcctgtgta tcagaccctg cgttgcaggg tttattttta tgattcacac
1051 aataattaat aaacttgtat tttattaata cagtaatacc tttacatcat
1101 cagtacagtc gattgtatct acttcatcta tccaagaaca tactcttgga
1151 agatatctaa taacaaaaac taaattaact agactaagaa accctaaatt
1201 agctaattca ttacagattc gccatttaag gcgttccaaa ataccagtcc
1251 agctgtgaat agcaccagtt agccgggttg tcgatatcct gaattgcagg
1301 aagatcttgt ggaaaccaag ttgtttcctc tcccggtagt tgaccctcat
1351 ttggaatttg aggatggttc tcccctgtgc gctctcgtgg acgtacatca
1401 gtctcaggtg gaatggtgca gtccgacccg cagacatggg gttggtgtcg
1451 aattctagtg ctctcatagt ctgagcacga tttagtgatt cccctgtgcg
1501 tgaatccatg ctggaatttg caggttgtgg ttatgaaggc tgaacagcca
1551 caacccttcc acactatcct cgtccttgtt tcaggaactt tcctcttgtc
1601 cttcttcgct gctgcgtgca gtggctcctg aatgggacac ttcctcttga
1651 ttccagaagg gagattggac atcgcagaat atagcgtttg ctgttgccca
1701 attcttgagt gctccttgct ctggtttgtc tagccagagt ttaaatgagg
1751 atccctctcc tggattgcag aggaagatag tgggaattcc gcctttaatt
1801 tgaactggct ttccgtattt acagttggat tgccagtcct tctgggcccc
1851 catgaattct ttaaagtgct ttaggtattg ggggttgacg tcatcaatga
1901 cgttatacca agcactgttg ctatatactt ttgggctaag atctaaatgc
1951 ccacacaaat aattgtgagg gcccaaagac ctggcccata ctgttttgcc
2001 tattctgctt gggccttcaa taacaatgga tatgggtcta tccggccgcg
2051 cagcggaatc catgacattt tcagcggccc agtcgcagat aatgtcagga
2101 acggcattga aagaagatga agaaaaaggt gaagaatata cagaaggtgg
2151 aggagaaaaa atcctatcta aattagaaac taaattatga tattgaaata
2201 aatatttttc agggagcttc tccctgatta tttgcaacgc agcttcttta
2251 gaacctgcgt ttagcgcctc tgcggctgcg tcgttagcag tctgctgacc
2301 tcctctagca gatctgccgt cgacctggaa ttcaccccag gtgagggtat
2351 ccccgtcctt atcaacgtag gacttgacat cggacgagga tttagctccc
2401 tggatgttgg ggtgaaagtg attcgacctt gttggtgaca caaggtcgaa
2451 gaatctgcta tttgtgcaga cgaatttacc ttcgaactgc accagcacat
2501 ggaggtgagg ttccccatcc tcgtgcagtt ctttggctat gtgtatgtat
2551 tttttgttgg ttggggtttg gatatttagc agttgggcta gacagtcctc
2601 tttagagaga gaacagtgtg gatacgtaat gaagtaattt ttggcttgga
2651 ttttaaaacg tttgggagga gccatttgga gacaatcata atttcaaatg
2701 aattggagac tggagacaat atatagtatg tctccaaatg gcattttggt
2751 aatttagaag atccttttag ctttaattca aaatccgaca actttgggtc
2801 cacctaaagg cgggcaccgt attaatatt