Sequence of DPV Sweet potato leaf curl virus
Sweet potato leaf curl virus isolate SPLCV-SP[BR:AlvM:09], complete genome.
ACC No: HQ393473
Dated: 2012-11-14 | Length: 2837 | CRC: -477504137
ID HQ393473; SV 1; circular; genomic DNA; STD; VRL; 2837 BP.
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AC HQ393473;
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DT 27-MAR-2011 (Rel. 108, Created)
DT 14-NOV-2012 (Rel. 114, Last updated, Version 4)
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DE Sweet potato leaf curl virus isolate SPLCV-SP[BR:AlvM:09], complete genome.
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KW .
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OS Sweet potato leaf curl virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2837
RX DOI; 10.1007/s00705-011-1016-x.
RX PUBMED; 21594599.
RA Albuquerque L.C., Inoue-Nagata A.K., Pinheiro B., Ribeiro S.D.,
RA Resende R.O., Moriones E., Navas-Castillo J.;
RT "A novel monopartite begomovirus infecting sweet potato in Brazil";
RL Arch. Virol. 156(7):1291-1294(2011).
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RN [2]
RC Publication Status: Online-Only
RP 1-2837
RX PUBMED; 23082767.
RA Albuquerque L.C., Inoue-Nagata A.K., Pinheiro B., Resende R.O.,
RA Moriones E., Navas-Castillo J.;
RT "Genetic diversity and recombination analysis of sweepoviruses from
RT Brazil";
RL Virol J 9:241-241(2012).
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RN [3]
RP 1-2837
RA Albuquerque L.C., Inoue-Nagata A.K., Pinheiro B., Resende R.O.,
RA Ribeiro S.G., Moriones E., Navas-Castillo J.;
RT "Genetic diversity by extensive recombination in the complex of monopartite
RT begomoviruses infecting sweet potato in Brazil";
RL Unpublished.
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RN [4]
RP 1-2837
RA Albuquerque L.C., Inoue-Nagata A.K., Pinheiro B., Resende R.O.,
RA Ribeiro S.G., Navas-Castillo J.;
RT ;
RL Submitted (11-OCT-2010) to the INSDC.
RL Virology, Embrapa Vegetables, Km 09, BR060, Brasilia, DF 70359-970, Brazil
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FH Key Location/Qualifiers
FH
FT source 1. .2837
FT /organism="Sweet potato leaf curl virus"
FT /host="Ipomoea batatas"
FT /strain="Sao Paulo"
FT /isolate="SPLCV-SP[BR:AlvM:09]"
FT /mol_type="genomic DNA"
FT /country="Brazil:Sao Paulo"
FT /lat_lon="22 S 51.27 W"
FT /collected_by="Amarilis Ros Golla"
FT /collection_date="2009"
FT /clone="SP71Sac11"
FT /db_xref="taxon:100755"
FT CDS 126. .470
FT /codon_start=1
FT /product="V2"
FT /protein_id="ADZ96657.1"
FT /translation="MEQLWDPLQNPLPDTLYGFRCMLSVKYLQSILKKYEPGTLGFELC
FT SELIRIFRVRQYDRANSRFAEISSIWGETGKTEAELRDSYRALHWECCPNCCPKLCPGF
FT KRRPDEEKEG"
FT CDS 295. .1059
FT /codon_start=1
FT /product="V1"
FT /note="CP"
FT /protein_id="ADZ96658.1"
FT /translation="MTGRIPVSRRFHPYGGRPVRRRLNFETAIVPYTGNAVPIAARSYV
FT PVSRGVRMKRRRGDRIPKGCVGPCKVQDYEFKMDVPHTGTFVCVSDFTRGTGLTHRLGK
FT RVCVKSMGIDGKVWMDDNVAKRDHTNIITYWLIRDRRPNKDPLNFGQIFTTYDNEPTTA
FT KIRMDLRDRMQVLKKFSVTVSGGPYSHKEQALIRKFFKGLYNHVTYNHKEEAKYENQLE
FT NALMLYSASSHASNPVYQTLRCRAYFYDSHNN"
FT CDS complement(1075. .1509)
FT /codon_start=1
FT /product="C3"
FT /note="REn"
FT /protein_id="ADZ96659.1"
FT /translation="MDSRTGESLSHAQTTRALEFDTNPMSVGRTAPFHLRIMYVHESTQ
FT GRTILKFQLRVNYRERRQLGFHKIFLQFRIVTTRLTGAIHSWTGILERLKWRICNELAN
FT LGFFSLVNLVFVVRYLPRVCSWIDEVDTVDCNDDVKILLY"
FT CDS complement(1226. .1672)
FT /codon_start=1
FT /product="C2"
FT /note="Trap"
FT /protein_id="ADZ96660.1"
FT /translation="MSNPLSGYKRKCPIQEPLHTEAKKAKRKVPEQRTRIVWKGCGCSA
FT FITTTCKYQHGFTHRGITKSCSDYESTRIRHQPHVCGSDCTVPSQNYVCPREHTGENHP
FT QIPAEGQLQGKEATGIPQDLPPIPDRDDPSNWCYSQLDWYFGTP"
FT CDS complement(1581. .2675)
FT /codon_start=1
FT /product="C1"
FT /note="Rep"
FT /protein_id="ADZ96661.1"
FT /translation="MPRAGRFNIKAKNYFLTYPQCSLSKEETLQQLLQLQTPTNKKYIK
FT ICRELHEDGQPHLHVLLQFEGNYQCTNQRFFDLVSPTRSAHFHPNIQRAKSSSDVKSYV
FT DKDGDTLEWGEFQVDGRSARGGQQTANDAAAEALNAGNKEAALQIIKEKLPEKFIFQYH
FT NLVSNLDRIFSPPPSVYSSPFSSSSFNNVPDIISDWAAENVMDSAARPDRPISIVIEGP
FT SRIGKTVWARSLGPHNYLCGHLDLSPKVYSNSAWYNVIDDVNPQYLKHFKEFMGAQKDW
FT QSNCKYGKPVQIKGGIPTIFLCNPGEGSSFKLWLDKPEQGALKIWATANAIFCDVQSPF
FT WVQEEVSHSGATAHRGEESQEESS"
FT CDS complement(2261. .2524)
FT /codon_start=1
FT /product="C4"
FT /protein_id="ADZ96662.1"
FT /translation="MKMGNLISMCFSSSRGITSARIKDSSTWSLQPGQHISTQTFRERN
FT PAPTSSPTSIRMETLWNGENSRSTADLLEEASRLLMTQQQRP"
XX
SQ Sequence 2837 BP; 743 A; 591 C; 681 G; 822 T; 0 other;
hq393473 Length: 2837 14-NOV-2012 Type: N Check: 1861 ..
1 accggtgccc gccgcgccct tttaaagtgg gccctacaat gggaccacgc
51 gtctttgccg tactgtcttt aatgattact ttgctttata aggaccaatc
101 aggtttccgt gcttgggcgc caagaatgga gcagttgtgg gaccctttgc
151 agaacccact cccggatact ttatacggtt ttaggtgtat gctatccgta
201 aaatacttgc agagtatttt gaagaaatac gagccaggaa ccttagggtt
251 cgagctctgt tcggagttaa tccgtatatt cagggtcagg cagtatgaca
301 gggcgaattc ccgtttcgcg gagatttcat ccatatgggg ggagaccggt
351 aagacggagg ctgaacttcg agacagctat cgtgccctac actgggaatg
401 ctgtcccaat tgctgcccga agctatgtcc cggtttcaag aggcgtccgg
451 atgaagagaa ggaggggtga ccgcatcccg aagggatgtg tcggtccctg
501 taaggtccag gactatgagt tcaagatgga cgttccccac acgggaacgt
551 ttgtctgtgt ctcggatttt actaggggaa ctgggcttac ccatcgcctg
601 ggtaagcgtg tttgtgtgaa gtccatgggt atagatggta aggtctggat
651 ggatgacaat gtggccaaga gagatcacac caatatcatc acgtattggc
701 tgattcgtga caggaggccc aataaggatc cgcttaactt tggccagatc
751 ttcacgacgt acgacaatga gcccactact gctaagatcc gaatggatct
801 gagagataga atgcaggtct tgaagaagtt ctcggttaca gtttcaggag
851 gtccatacag ccacaaggag caggccttaa ttaggaagtt ttttaagggt
901 ttgtataatc atgttactta caatcacaag gaagaagcta agtatgagaa
951 tcaattagag aatgcactta tgttgtatag tgctagtagt catgctagta
1001 atcccgtgta tcagaccctg cgttgcaggg cttatttcta tgattcgcac
1051 aataattaat aaaattatat tttattaata gagtaatatc tttacatcat
1101 cattacaatc tacagtatct acttcatcta tccaagaaca tactcttgga
1151 agatatctaa caacgaaaac taaattaact aaactaaaaa atcctaaatt
1201 tgctaattca ttacatatac gccatttaag gcgttccaaa ataccagtcc
1251 aactgtgaat agcaccagtt agacgggtcg tcacgatccg gaattggagg
1301 aagatcttgt ggaatcccag ttgcctcctt tccctgtagt tgaccctcag
1351 ctggaatttg aggatggttc tcccctgtgt gctctcgtgg acatacataa
1401 ttctgagatg gaacggtgca gtccgaccca cagacatggg gttggtgtcg
1451 aattctagtg ctctcgtagt ctgagcatga cttagtgatt cccctgtgcg
1501 tgaatccatg ctggtacttg caggttgtgg tgatgaaggc tgaacagccg
1551 caacccttcc acactatcct cgtcctctgt tcaggaactt tcctcttggc
1601 tttcttcgcc tctgtgtgca gtggctcctg aatgggacac ttcctcttgt
1651 acccagaaag gggattggac atcgcagaat atagcgtttg ctgttgccca
1701 aattttgagt gctccttgct ctggtttgtc caaccagagt ttaaatgagg
1751 agccctctcc tggattgcag aggaagatag tgggaattcc acctttaatt
1801 tgaactggct ttccgtattt acagttggat tgccagtcct tctgggcccc
1851 catgaattcc ttaaagtgct ttaggtattg ggggttgacg tcatcaatga
1901 cgttatacca agcactgttg ctgtatactt tagggcttag atctaaatgc
1951 ccacacaaat aattatgagg ccccaaagac ctggcccata ctgttttgcc
2001 tattctgctt gggccttcaa taacaatgga tatgggtcta tccggccgcg
2051 cagcggaatc catgacattt tcagcggccc agtcgctgat aatgtcaggt
2101 acattattga aagaagaaga agaaaaaggg gaagaatata cagaaggagg
2151 aggagaaaaa atcctatcta aatttgaaac taaattatga tattgaaata
2201 taaatttttc aggaagtttt tccttgatta tttgtaacgc agcttcttta
2251 ttgcctgcat ttagggcctc tgctgctgcg tcattagcag tctgctggcc
2301 tcctctagca gatctgccgt cgacctggaa ttctccccat tccaaagtgt
2351 ctccatcctt atcgacgtag gacttgacgt cggagctgga tttcgctctc
2401 tgaatgtttg ggtggaaatg tgctgaccgg gttggagaga ccaagtcgaa
2451 gaatctttga ttcgtgcact ggtaattccc ctcgaactgg agaagcacat
2501 ggagatgagg ttgcccatct tcatgcagtt ctctgcatat cttaatatat
2551 tttttatttg taggggtttg gagttgaaga agctgctgaa gagtttcttc
2601 tttggataga gaacattggg gataagtgag aaaatagttt tttgctttga
2651 tattaaaacg cccggctctt ggcattttga ctaagtcaaa tggtggacac
2701 aaaaactcta tatgaattgg tggaacggtg gacaatttat atgtgtccac
2751 caaatggcaa attggtaatt taggtaactt taatttgaat ggtaagatcc
2801 tattggtcct ccataaagcg ggcaccgtat taatatt