Sequence of DPV Sweet potato leaf curl virus
Sweet potato leaf curl virus isolate SPLCV-US[BR:AM4:09], complete genome.
ACC No: HQ393475
Dated: 2012-11-14 | Length: 2827 | CRC: -524517115
ID HQ393475; SV 1; circular; genomic DNA; STD; VRL; 2827 BP.
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AC HQ393475;
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DT 27-MAR-2011 (Rel. 108, Created)
DT 14-NOV-2012 (Rel. 114, Last updated, Version 4)
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DE Sweet potato leaf curl virus isolate SPLCV-US[BR:AM4:09], complete genome.
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KW .
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OS Sweet potato leaf curl virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RC Publication Status: Online-Only
RP 1-2827
RX PUBMED; 23082767.
RA Albuquerque L.C., Inoue-Nagata A.K., Pinheiro B., Resende R.O.,
RA Moriones E., Navas-Castillo J.;
RT "Genetic diversity and recombination analysis of sweepoviruses from
RT Brazil";
RL Virol J 9:241-241(2012).
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RN [2]
RP 1-2827
RA Albuquerque L.C., Inoue-Nagata A.K., Pinheiro B., Resende R.O.,
RA Ribeiro S.G., Moriones E., Navas-Castillo J.;
RT "Genetic diversity by extensive recombination in the complex of monopartite
RT begomoviruses infecting sweet potato in Brazil";
RL Unpublished.
XX
RN [3]
RP 1-2827
RA Albuquerque L.C., Inoue-Nagata A.K., Pinheiro B., Resende R.O.,
RA Ribeiro S.G., Navas-Castillo J.;
RT ;
RL Submitted (11-OCT-2010) to the INSDC.
RL Virology, Embrapa Vegetables, Km 09, BR060, Brasilia, DF 70359-970, Brazil
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FH Key Location/Qualifiers
FH
FT source 1. .2827
FT /organism="Sweet potato leaf curl virus"
FT /host="Ipomoea batatas"
FT /strain="USA"
FT /isolate="SPLCV-US[BR:AM4:09]"
FT /mol_type="genomic DNA"
FT /country="Brazil:Sao Paulo"
FT /lat_lon="21.53 S 51.2 W"
FT /collected_by="Amarilis Ros Golla"
FT /collection_date="2009"
FT /clone="SP130Bam4"
FT /db_xref="taxon:100755"
FT CDS 70. .468
FT /codon_start=1
FT /product="V2"
FT /protein_id="ADZ96669.1"
FT /translation="MITLLYKDQSGFRAWAPRMEQLWDPLQNPLPDTLYGFRCMLSVKY
FT LQSILKKYEPGTLGFELCSELIRIFRVRQYDRANSRFAEISSIWGETGKTEAELRDSYR
FT ALHWECCPNCCPKLCPGFKRRPDEEKEG"
FT CDS 293. .1057
FT /codon_start=1
FT /product="V1"
FT /note="CP"
FT /protein_id="ADZ96670.1"
FT /translation="MTGRIPVSRRFHPYGGRPVRRRLNFETAIVPYTGNAVPIAARSYV
FT PVSRGVRMKRRRGDRIPKGCVGPCKVQDYEFKMDVPHTGTFVCVSDFTRGTGLTHRLGK
FT RVCVKSMGIDGKVWMDDNVAKRDHTNIITYWLIRDRRPNKDPLNFGQIFTTYDNEPTTA
FT KIRMDLRDRMQVLKKFSVTVSGGPYSHKEQALIRKFFKGLYNHVTYNHKEEAKYENQLE
FT NALMLYSASSHASNPVYQTLRCRAYFYDSHNN"
FT CDS complement(1073. .1507)
FT /codon_start=1
FT /product="C3"
FT /note="REn"
FT /protein_id="ADZ96671.1"
FT /translation="MDSRTGESLSHAQTTRALEFDTNPMSVGRTAPFHLRIMYVHESTQ
FT GRTILKFQLRVNYRERRQLGFHKIFLQFRILTTRLTGAIHSWTGILERLKWRICNELAN
FT LGFFSLVNLVFVVRYLPRVCSWIDEVDNVDCNDDVKILLY"
FT CDS complement(1224. .1670)
FT /codon_start=1
FT /product="C2"
FT /note="Trap"
FT /protein_id="ADZ96672.1"
FT /translation="MSNPLSGYKRKCPIQEPLHTEAKKAKRKVPEQRTRIVWKGCGCSA
FT FITTTCKYQHGFTHRGITKSCSDYESTRIRHQPHVCGSDCTVPSQNYVCPREHTGENHP
FT QIPAEGQLQGKEATGIPQDLPPIPDLDDPSNWCYSQLDWYFGTP"
FT CDS complement(1579. .2673)
FT /codon_start=1
FT /product="C1"
FT /note="Rep"
FT /protein_id="ADZ96673.1"
FT /translation="MAPPKRFKIQAKNYFITYPRCSLSKEDCLAQLLNIQTPTNKKYIH
FT VARELHEDGEPHLHVLVQFEGKFVCTNSRFFDLVSPNRSNHFHPNIQGAKSSSDVKSYV
FT DKDGDTITWGEFQVDGRSARGGQQTANDAAAEALNAGSKEAALQIIREKLPEKYLFQFH
FT NLVSNLDRIFSPPPSVYSSPFSSSSFNAVPDIISDWAAENVMDSAARPDRPISIVIEGP
FT SRIGKTVWARSLGPHNYLCGHLDLSPKVYSNSAWYNVIDDVNPQYLKHFKEFMGAQKDW
FT QSNCKYGKPVQIKGGIPTIFLCNPGEGSSFKLWLDKPEQGALKNWATANAIFCDVQSPF
FT WVQEEVSHSGATAHRGEEGQEESS"
FT CDS complement(2259. .2516)
FT /codon_start=1
FT /product="C4"
FT /protein_id="ADZ96674.1"
FT /translation="MGNLTSMCLCNSKANSSAQIADSSIWSHRTDRITFTPTSRELNPR
FT PMSSPTLTRTGIPSPGVNSRSTADLLEEASRLLMTQPQRL"
XX
SQ Sequence 2827 BP; 743 A; 597 C; 683 G; 804 T; 0 other;
hq393475 Length: 2827 14-NOV-2012 Type: N Check: 3454 ..
1 accggtgccg ccgcgccctt taaagtgggc cccataaagg gaccacgcgt
51 cttttccgta ctgtctttaa tgattacttt gctttataag gaccaatcag
101 gtttccgtgc ttgggcgcca agaatggagc agttgtggga ccctttgcag
151 aacccactcc cggatacttt atacggtttt aggtgtatgc tatccgtaaa
201 atacttgcag agtattttga agaaatacga gccaggaacc ttagggttcg
251 agctctgttc ggagttaatc cgtatattca gggtcaggca gtatgacagg
301 gcgaattccc gtttcgcgga gatttcatcc atatgggggg agaccggtaa
351 gacggaggct gaacttcgag acagctatcg tgccctacac tgggaatgct
401 gtcccaattg ctgcccgaag ctatgtcccg gtttcaagag gcgtccggat
451 gaagagaagg aggggtgacc gcatcccgaa gggatgtgtc ggtccctgta
501 aggtccagga ctatgagttc aagatggacg ttccccacac gggaacgttt
551 gtctgtgtct cggattttac taggggaact gggcttaccc atcgactggg
601 taagcgtgtt tgtgtgaagt ccatgggtat agatggtaag gtctggatgg
651 atgacaatgt ggccaagaga gatcacacca atatcatcac gtattggctg
701 attcgtgaca ggaggcccaa taaggatccg cttaactttg gccagatctt
751 cacgacgtac gacaatgagc ccactactgc taagatccga atggatctga
801 gagatagaat gcaggtcttg aagaagttct cggttacagt ttcaggaggt
851 ccatacagcc acaaggagca ggccttaatt aggaagtttt ttaagggttt
901 gtataatcat gttacttaca atcacaagga agaagctaag tatgagaatc
951 aattagagaa tgcacttatg ttgtatagtg ctagtagtca tgctagtaat
1001 cccgtgtatc agaccctgcg ttgcagggct tatttctatg attcgcataa
1051 taattaataa aattatattt tattaataga gtaatatctt tacatcatca
1101 ttacaatcta cattatctac ttcatctatc caagaacata ctcttggaag
1151 atatctaaca acgaaaacta aattaactaa actaaaaaat cctaaatttg
1201 ctaattcatt acatatacgc catttaaggc gttccaaaat accagtccaa
1251 ctgtgaatag caccagttag acgggtcgtc aagatccgga attggaggaa
1301 gatcttgtgg aatcccagtt gcctcctttc cctgtagttg accctcagct
1351 ggaatttgag gatggttctc ccctgtgtgc tctcgtggac atacataatt
1401 ctgagatgga acggtgcagt ccgacccaca gacatggggt tggtgtcgaa
1451 ttctagtgct ctcgtagtct gagcatgact tagtgattcc cctgtgcgtg
1501 aatccatgct ggtacttgca ggttgtggtg atgaaggctg aacagccgca
1551 acccttccac actatcctcg tcctctgttc aggaactttc ctcttggcct
1601 tcttcgcctc tgtgtgcagt ggctcctgaa tgggacactt cctcttgtac
1651 ccagaaaggg gattggacat cgcagaatat agcgtttgct gttgcccaat
1701 ttttaagtgc tccttgctct ggtttgtcca accagagttt aaatgaggag
1751 ccctctcctg gattgcagag gaagatagtg ggaattccac ctttaatttg
1801 aactggcttt ccgtatttac agttggattg ccagtccttc tgggccccca
1851 tgaattcctt aaagtgcttt aggtattggg ggttgacgtc atcaatgacg
1901 ttataccaag cactgttgct gtatacttta gggcttagat ctaaatgccc
1951 acacaaataa ttatgaggcc ccaaagacct ggcccatact gttttgccta
2001 ttctgcttgg gccttcaata acaatggata tgggtctatc cggccgcgca
2051 gcggaatcca tgacattttc agcggcccag tcgctgataa tgtcaggaac
2101 ggcattgaaa gaagaagatg aaaaaggaga agaatataca gaaggaggag
2151 gagaaaaaat cctatctaaa ttactaacta aattgtgaaa ttgaaacaaa
2201 tatttttcag gaagtttctc cctaattatt tgcaacgcag cttctttaga
2251 acctgcgttt agagcctctg cggctgcgtc attagcagtc tgctggcctc
2301 ctctagcaga tctgccgtcg acctggaatt caccccaggt gatggtatcc
2351 ccgtccttgt caacgtagga cttgacatcg gacgaggatt tagctccctg
2401 gatgttgggg tgaaagtgat tcgatctgtt cggtgagacc agatcgaaga
2451 atctgctatt tgtgcagacg aatttgcctt cgaattgcac aagcacatgg
2501 aggtgaggtt ccccatcctc gtgcagttct cttgctacgt gtatgtattt
2551 tttgttggtg ggtgtttgga tatttaggag ttgggctagg cagtcctctt
2601 ttgagagaga acagcgtgga taagtaataa aataattttt ggcctgaatt
2651 ttaaaacgtt ttggaggagc catttggaga cacgcataag ttcaaatgaa
2701 ttggagactg gagacaatat atagtatgtc tccaaatggc attctggtaa
2751 tttagaagat ccttttagct ttaattcaaa ttccgacaac tctgggtcca
2801 ccaaaaggcg ggcaccgtat taatatt