Sequence of DPV Soybean mosaic virus

Soybean mosaic virus strain 4143-3/CHN/2004 nonfunctional coat protein gene, partial sequence.

ACC No: HQ396723

Dated: 2011-01-28 | Length: 1343 | CRC: 581283291

                
ID   HQ396723; SV 1; linear; genomic RNA; STD; VRL; 1343 BP.
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AC   HQ396723;
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DT   10-JAN-2011 (Rel. 107, Created)
DT   28-JAN-2011 (Rel. 107, Last updated, Version 2)
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DE   Soybean mosaic virus strain 4143-3/CHN/2004 nonfunctional coat protein
DE   gene, partial sequence.
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KW   .
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OS   Soybean mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-1343
RA   Yang Y., Zhi H.;
RT   "Evidences from soybean show the origin of Watermelon mosaic virus (WMV)";
RL   Unpublished.
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RN   [2]
RP   1-1343
RA   Yang Y., Zhi H.;
RT   ;
RL   Submitted (12-OCT-2010) to the EMBL/GenBank/DDBJ databases.
RL   Soybean Research Institute, National Center for Soybean Improvement,
RL   National Key Laboratory for Crop Genetics and Germplasm Enhancement,
RL   Nanjing Agricultural University, 1 Weigang, Nanjing, Jiangsu 210095, China
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1343
FT                   /organism="Soybean mosaic virus"
FT                   /host="soybean"
FT                   /lab_host="soybean"
FT                   /strain="4143-3/CHN/2004"
FT                   /serotype="SMV"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /collection_date="2004"
FT                   /note="PCR_primers=fwd_seq: gtgggacaggagcaaaga"
FT                   /db_xref="taxon:12222"
FT   misc_feature    <1. .1090
FT                   /note="nonfunctional coat protein due to mutation"
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SQ   Sequence 1343 BP; 422 A; 227 C; 334 G; 360 T; 0 other;

hq396723 Length: 1343  28-JAN-2011  Type: N  Check: 1292  ..

       1  gtgggacagg agcaaagagc ttatgcatcg cactgaggcg atatgtgcag
      51  caatgattga ggcatgggga tacactgaat tgctgcaaga gatccgcaaa
     101  ttttatttat ggctcctaaa caaggatgaa tttaaggagc tcgcttcgtc
     151  tggaaaagca ccatatattg cagagacagc tttgagaaag ctgtacacag
     201  atatcaatgc tcaaacaagt gagctacaaa gatatcttga agtgctggat
     251  ttcaatcatg ctgatgactg ttgtgaatca gtttccttat aatcaggcaa
     301  ggagaaagaa agagacatgg atgcagataa ggatccaaag aagagcacca
     351  gcagtagcaa aggagctggt acgaacagca aagatgtaaa tgttggatca
     401  aaaggaaagg tggttccgcg tttgcagaag attacaagaa agatgaatct
     451  tccgatggtt gaagggaaga tcatccttag cttggaccac ttgcttgagt
     501  ataaacctaa tcaggttgat ttattcaaca ctcgagcaac gagaacacag
     551  tttgaagcgt ggtacaatgc agttaaagat gaatatgagc ttgatgatga
     601  gcagatgggt gtggtcatga atggtttcat ggtttggtgt attgacaatg
     651  gcacatctcc agatgccaat ggcgtgtggg tgatgatgga tggagaggaa
     701  caaattgaat atccgttgaa gcccattgtc gaaaatgcaa aaccaacttt
     751  gaggcaaatc atgcatcatt tttcagatgc agcagaagct tacattgaga
     801  tgaggaattc tgaaagtccg tatatgccta gatatggact actgaggaat
     851  ttgagagata gagagctagc ccgctatgct tttgacttct atgaggtcac
     901  ttctaaaaca ccaaacaggg caagggaagc aatagcgcaa atgaagtctg
     951  cagctctctc gggagttaac aacaagttgt ttggacttga tggaaatatc
    1001  tcaaccaact ccgaaaatac tgaaaggcac actgcaaggg atgtgaatca
    1051  aaacatgcac actcttctgg gcatgggccc acagcagtaa aggtcaagta
    1101  aattggccac agttatcatt tcgggtcact ttatagttta ctataatata
    1151  gtagttgcac tttctttgag tatagtgtga ttgcatcacc aaatagtact
    1201  cttgtttagt gtggttttaa ccacctcagt gtgttttata ttatagttta
    1251  tgaatggcag ggagaaccat tgtgttactg gagccctttg aagagtgatt
    1301  ttatcatgtt tagtggccga ggtacggcaa tgtttgttgt cct