Sequence of DPV Asclepias asymptomatic virus
Asclepias asymptomatic virus, complete genome.
ACC No: HQ425778
Dated: 2013-01-28 | Length: 6175 | CRC: -1264403801
ID HQ425778; SV 1; linear; genomic RNA; STD; VRL; 6175 BP.
XX
AC HQ425778;
XX
DT 09-MAY-2011 (Rel. 108, Created)
DT 28-JAN-2013 (Rel. 115, Last updated, Version 2)
XX
DE Asclepias asymptomatic virus, complete genome.
XX
KW .
XX
OS Asclepias asymptomatic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales;
OC Tymoviridae; Tymovirus; unclassified Tymovirus.
XX
RN [1]
RP 1-6175
RX PUBMED; 22026416.
RA Min B.E., Feldman T.S., Ali A., Wiley G., Muthukumar V., Roe B.A.,
RA Roossinck M., Melcher U., Palmer M.W., Nelson R.S.;
RT "Molecular characterization, ecology, and epidemiology of a novel Tymovirus
RT in Asclepias viridis from Oklahoma";
RL Phytopathology 102(2):166-176(2012).
XX
RN [2]
RP 1-6175
RA Min B.-E., Nelson R.S.;
RT ;
RL Submitted (21-OCT-2010) to the INSDC.
RL Plant Biology, The Samuel Roberts Noble Foundation, 2510 Sam Noble Pkwy,
RL Ardmore, OK 73401-2124, USA
XX
DR RFAM; RF00233; Tymo_tRNA-like.
XX
FH Key Location/Qualifiers
FH
FT source 1. .6175
FT /organism="Asclepias asymptomatic virus"
FT /host="Asclepias viridis"
FT /mol_type="genomic RNA"
FT /country="USA"
FT /collection_date="2007"
FT /db_xref="taxon:1027880"
FT 5'UTR 1. .72
FT CDS 73. .1974
FT /codon_start=1
FT /product="movement protein"
FT /function="involved in movement"
FT /note="overlapping protein"
FT /db_xref="InterPro:IPR004935"
FT /db_xref="UniProtKB/TrEMBL:F5A8F3"
FT /protein_id="AEE02008.1"
FT /translation="MSNGFSARSRRSLPNLPQGLVPSPCAGLRNGAHAQLSHHLSLDGP
FT QRPPALSSPSRNSNFRIGHYPSPSSRAQSARNQSSLQPLALPCQNSILGAFHEAREIQQ
FT APKEKSKLLRAPELPSDPKRLGPLPNHLPSPPKNRRRLHARRSHVLHSRTSSGCLPPHS
FT KSAETFLQFGSAPRVRVHEPLTLTKSLHLPTSQPDPSLHPGKPLRRVLQPAPIGHSMAK
FT NLFHPPPPDSTFCHNPGILGPPPLNPHTKRPAQPTFGRSQPLFIPSPPPPLPCSRPNLI
FT QNSRVHRAASIHLPLPTPSSPAHPKESLRRPLHLHKSGSNPPNLRPRRLRSNPVEQTRI
FT LLGDFKRLGQPSNLRAPELRHPTKCGLQLSPQPLPKTQNLSKPTLAPHRSGLRSHPILP
FT NPPSSLPKLVFISPKGKVHFSLPPPLRPAPPSTSSPPNFPQASQPSTPPSSPDSFKSLP
FT NLTSALTPPPTPTRNSPEFPHLSFRLSHQVPNLALPPRLLGAGTSSSRLKAHRRSVRAT
FT AARPLPPPSPPSPIPPPVGKTSLLDDFEAKLSALRARRHSISSSSSPRSTPPQIPEHQP
FT PALHFSQLELNPTFPPPQPPSHPTLFPPPRLHQHPSLPLHHLSTTHHQLPHQLLPKN"
FT CDS 80. .5506
FT /codon_start=1
FT /product="replicase"
FT /db_xref="GOA:F5A8F4"
FT /db_xref="InterPro:IPR000606"
FT /db_xref="InterPro:IPR001788"
FT /db_xref="InterPro:IPR002588"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="InterPro:IPR008043"
FT /db_xref="UniProtKB/TrEMBL:F5A8F4"
FT /protein_id="AEE02009.1"
FT /translation="MAFQLALDALSQTSHRDSSLHPVLDSVMEPMRNSLTTFPWMVPND
FT LQPFLLQAGIQTSGLGTTPHPHPVHKVLETNLLFNHWHFLAKTPSSVLFMKPEKFNKLQ
FT KRNPNFSELLNYRVTPNDSVRYPTTSPHLPKTDVVFMHDALMYYTPEQVLDVFLRIPNL
FT QKLFCSLVVPPESEFTNLSLSPNLYTFQLHNQTLHYIPENHYAGSYNQPLSAIQWLKIS
FT SIHHPQIQLSVTILESWGPLHSILIQRGLPSQHLAGPNLFSSLLHPLPSPAADLISFKI
FT PECIELPQSTFLSQPLRHRLIPKKAYDALFTYTRAVRTLRTSDPAGFVRTQSNKPEYSW
FT VTSNAWDNLQTFALLNCAIRPNVVYNFLRNPFQKLKIYLSQHWRRIVAVSAPTLSFLTL
FT LPHFLNWSLSLPKVKCISAFRHRFDQPPPQPLALQIFHKLVNHLPPQVLQTLSKVCQTL
FT HLPSPLPPPRPGILPSFRISHSAYPIRFPTWLSLLACLVPELLVLGSKLTGDLSVQQQH
FT DLYHHHLHPAQYHLQWERLPYSTTSRQNFLPFEPVATPSPPQAPLAQPPPKSRSTSPQH
FT FTSPSWSSTQLSPHLSPLPTQPSSPPPDFINIPVSPSTTFRQPTTSFLTNSSPRTRSLY
FT EYLLQYYHPGPPPLPQPASNGCHCEPCTQSEASSPTQNFPLQDPSSPYIVPPDPSTPIP
FT EPPLLKDLSCTGPILSFQDLYPRNYYPNTALFLTRLRITPPKPLPLPPNDCLLQAISPS
FT LSVSPSRLWLALQEIIPDCLLDNEEVHRLGLSTDLLTALCHYFNFKAEVISDGTSLHYG
FT ISDSPVQIQIIHTSGSPGHYSPPPKLTGATPPREPPHPLTEQLLRFKFKGAHLPFSKVH
FT SYSSSVAHAKNLVSNMKNGFDGILSLVESNVKHAPGCSPRDKIIMLDRLLDNAAPRSVH
FT LIHIAGFAGCGKTHPLQHLLRTKPFHNFRVSVPTTDLRNEWKKDMALPSSQSHRFNTWE
FT SSLFKHSNILVIDEIYKLPRGYLDLSIHSDPSISLIILLGDPLQGEYHSTSPHSSNHLL
FT QSETERLSQFIDHYCWWTYRVPSHISDLFNVPSYNQSHGPFFGTVRLASSYSPGQHNLV
FT NSMATSAAVNQLGYPSCTISSSQGMTFRKHVTILLDKHSRLLSPSNTLVALTRSTAGVE
FT FLGDPMSLSGTNNSSDMFSRAMHQMPINLATCFPRIFHKLNLLREPIKHRSKRLLGSRP
FT PSPIYLNPKKMHLPPHIPIDYALDYVLHNPHVFGSKDDPRLECNFLPPTRLALHSDLIS
FT ANPSVPSLQPVDSDFRTPITPVYPGETFENLAAFFLPAHDPELKEILYKDQNSQQFPWF
FT DRPFELSCQPSSLIAARHSPSQDPTLLPSSIKKRLRFRPSDNPHQFSADEIILGNHLFH
FT SLCRAYNRNPNQTLPFNPSLFAECIALNDYAQLSSKTKSTIVANASRSDPDWRHTAVKI
FT FAKSQHKVNDGSIFGPWKACQTLALMHDFVILSLGPVKKYQRLFDQADRPSHLYTHCGK
FT TPQDLSLWCSAHLSHKTKVTNDYTAFDQSQHGESVILEALKMKRLSIPEHLILLHIHLK
FT TNVSTQFGPLTCMRLTGEPGTYDDNTDYNIAVLYSQYNLQNTPVMVSGDDSLIDSKCPE
FT LLSWPTIQSKLHLRFKTETTDYPLFCGYYVGSSGAIRNPLALFAKLMIAIDDQSISEKR
FT LSYITEFSVGHSLGDSFWDLLPSEIHPYQSACFDYFCRNSPPHEKSILHNLPFSPTALS
FT TITSSIKWLSKSAFSALPMRIRRAAIEKSQLPSSHENPEVSRLESELLHNFQ"
FT CDS 5510. .6076
FT /codon_start=1
FT /product="coat protein"
FT /db_xref="GOA:F5A8F5"
FT /db_xref="InterPro:IPR000574"
FT /db_xref="UniProtKB/TrEMBL:F5A8F5"
FT /protein_id="AEE02010.1"
FT /translation="METERVLVTQPAISTQTDLLSIPSSPNPPTITQPFQIEIAALGKE
FT SYSDSISVAALSSIAAYTSLYKHAELHSLSATIHPTNSAPSNPTAVALAWVPYNSAASP
FT TQILSVYGGMMFCIGGSIQTLKPIEVLCDLSKVNPILKSNVTFSDTPKLLIQSVAPDPP
FT SKLPTCSITIKGMIRLHSPLLQASA"
FT 3'UTR 6077. .6175
XX
SQ Sequence 6175 BP; 1471 A; 2347 C; 922 G; 1435 T; 0 other;
hq425778 Length: 6175 28-JAN-2013 Type: N Check: 6708 ..
1 ggtaatcttt accgaacagt cctctgatca cagacagctg ttctttaatt
51 taattgtcaa atacgtctgc caatgagcaa tggcttttca gctcgctcta
101 gacgctctct cccaaacctc ccacagggac tcgtcccttc accctgtgct
151 ggactccgta atggagccca tgcgcaactc tctcaccacc tttccctgga
201 tggtccccaa cgacctccag ccctttcttc tccaagccgg aattcaaact
251 tccggattgg gcactacccc tcaccctcat cccgtgcaca aagtgctaga
301 aaccaatctt ctcttcaacc actggcactt ccttgccaaa actccatcct
351 cggtgctttt catgaagccc gagaaattca acaagctcca aaagagaaat
401 ccaaacttct ccgagctcct gaactaccga gtgaccccaa acgactcggt
451 ccgctaccca accacctccc ctcacctccc aaaaacagac gtcgtcttca
501 tgcacgacgc tctcatgtac tacactccag aacaagttct ggatgtcttc
551 ctccgcattc caaatctgca gaaacttttc tgcagtttgg tagtgccccc
601 agagtcagag ttcacgaacc tctcactctc accaaatctc tacaccttcc
651 aacttcacaa ccagaccctt cactacatcc cggaaaacca ctacgccggg
701 tcttacaacc agcccctatc ggccattcaa tggctaaaaa tctcttccat
751 ccaccacccc cagattcaac tttctgtcac aatcctggaa tcctggggcc
801 ccctccactc aatcctcata caaagaggcc tgcccagcca acatttggcc
851 ggtcccaacc tcttttcatc ccttctccac cccctcccct cccctgcagc
901 cgacctaatc tcattcaaaa ttcccgagtg catcgagctg cctcaatcca
951 ccttcctctc ccaacccctt cgtcaccggc tcatcccaaa gaaagcctac
1001 gacgccctct tcacctacac aagagcggtt cgaaccctcc gaacctccga
1051 ccccgccggc ttcgttcgaa cccagtcgaa caaaccagaa tactcctggg
1101 tgacttcaaa cgcctgggac aaccttcaaa ccttcgcgct cctgaactgc
1151 gccatccgac caaatgtggt ctacaacttt ctccgcaacc ccttccaaaa
1201 actcaaaatt tatctaagcc aacactggcg ccgcatcgta gcggtctccg
1251 ctcccaccct atccttccta accctccttc ctcacttcct aaactggtct
1301 ttatctctcc caaaggtaaa gtgcatttca gccttccgcc accgcttcga
1351 ccagcccccc cctcaacctc tagccctcca aattttccac aagctagtca
1401 accatctacc cccccaagtt ctccagactc tttcaaaagt ctgccaaacc
1451 ttacatctgc cctcacccct ccccccaccc cgacccggaa ttctcccgag
1501 tttccgcatc tctcattccg cctatcccat caggttccca acctggctct
1551 ccctcctcgc ctgcttggtg ccggaacttc tagttctagg ctcaaagctc
1601 accggcgatc tgtccgtgca acagcagcac gacctctacc accaccatct
1651 ccacccagcc caataccacc tccagtggga aagacttccc tactcgacga
1701 cttcgaggca aaactttctg cccttcgagc ccgtcgccac tccatctcct
1751 cctcaagctc ccctcgctca accccccccc aaatcccgga gcaccagccc
1801 ccagcacttc acttctccca gctggagctc aacccaactt tccccccacc
1851 tcagccccct tcccacccaa ccctcttccc ccccccccga cttcatcaac
1901 atcccagtct ccccctccac cacctttcga caacccacca ccagcttcct
1951 caccaactcc tccccaagaa ctaggagcct ctatgaatat ttgctccagt
2001 actaccaccc cggccccccc ccccttcccc aacccgcatc taacggatgc
2051 cactgcgagc cctgcaccca aagtgaagca tccagcccca cccaaaactt
2101 tcccctccaa gacccctcct ccccctacat tgttccaccc gacccttcaa
2151 ccccaattcc agagccccct ctactgaaag atctgtcttg cactggaccg
2201 atcctcagct tccaagacct ctacccccgc aactactacc caaacaccgc
2251 gctgttcctc accagactcc gcatcacccc cccaaaacca ctccccctcc
2301 caccgaatga ctgcttgctc caagcaatct ctccttcttt gtcagtcagt
2351 ccatccagac tttggcttgc tctccaggaa attattcccg actgcttgct
2401 tgacaatgaa gaagtccatc gcttgggctt gtccaccgac ctcctgaccg
2451 ctctctgcca ctacttcaac ttcaaagccg aggtaatttc tgacgggacc
2501 tctctgcact acggaatctc cgattctccc gtccaaatcc aaataataca
2551 tacctctggc tctcctggcc actacagccc tcccccaaaa ctcactggcg
2601 ccactccacc aagagaaccg ccccaccctc ttactgaaca gctcctccgc
2651 ttcaaattca aaggagctca tcttccattc tccaaagtcc attcttactc
2701 tagctccgtt gcccatgcta aaaacctagt gagcaacatg aaaaatggct
2751 ttgatggaat tctctctctt gtcgagagca atgttaagca tgctcctggc
2801 tgttctccca gagataaaat aataatgctg gaccgtctcc ttgataatgc
2851 cgcacctcgc tcagttcatt taatccacat agccgggttc gccggctgtg
2901 gcaagaccca tcccctccag cacctcctca gaactaaacc cttccataac
2951 ttccgagtct ctgttcccac caccgacctt cggaacgaat ggaagaaaga
3001 catggctctt ccttcaagtc agtctcatcg cttcaacacc tgggaatcct
3051 ccctcttcaa acattccaat atcctcgtca ttgatgaaat ctacaaactc
3101 ccccgaggtt atttggatct ctccatacat tccgaccctt ccatttctct
3151 catcatcctc cttggagacc ctctccaggg agagtatcat tccacttccc
3201 cccactcttc caatcacctt cttcaatcag aaactgagag actctcgcaa
3251 ttcatcgacc actattgttg gtggacgtac agagtcccat cccacatttc
3301 tgatcttttt aacgtccctt cctacaacca atcccacgga cctttctttg
3351 gaactgtccg actggcctca tcctactccc caggacaaca caacctggtc
3401 aacagcatgg caacttcagc cgctgtcaat caactaggct atccttcctg
3451 caccatcagc tccagtcaag gaatgacttt ccgcaaacat gtaacaatcc
3501 tccttgacaa acactcccga ctcctttccc caagtaacac actggtagcc
3551 ctcacaagat ccaccgctgg cgtggaattc cttggagacc ccatgtctct
3601 atccggcacc aacaactctt ctgacatgtt ctccagagcg atgcatcaaa
3651 tgccaatcaa tttggcaacc tgtttcccga gaatcttcca caagctcaac
3701 cttcttcggg aaccaatcaa acatcgatcc aagagactcc ttggatctcg
3751 acccccctcc ccaatttacc tcaaccccaa gaaaatgcac cttccccctc
3801 acattccaat cgattatgca ctcgattacg tgttgcacaa ccctcacgtc
3851 tttggctcca aagatgaccc tcgactggaa tgcaactttc ttccccccac
3901 tcgactcgcc ctacactccg acttaatctc cgccaatccc tcagtcccaa
3951 gcctccagcc tgttgactcc gatttccgca caccaatcac ccccgtttat
4001 cccggcgaga ccttcgaaaa tctcgcggcc ttcttcctcc ctgcccatga
4051 tcctgagctt aaagaaatac tctacaagga tcaaaacagt caacagtttc
4101 cctggtttga ccgccctttc gagctatctt gccagccctc ctctcttata
4151 gccgcccgac acagtccttc acaagacccg accctcctcc cctcctctat
4201 taagaaaaga ttgaggtttc gcccatcaga caacccccac caattctccg
4251 ccgatgaaat aatactgggg aatcatctgt tccactcact atgccgagcc
4301 tacaatcgaa acccaaacca aactctcccc ttcaatcctt ccctcttcgc
4351 tgaatgcata gctctcaacg actacgctca gctctcctcc aaaaccaaat
4401 ccaccatcgt cgccaatgct tcccggtctg acccagattg gagacatact
4451 gccgtcaaga tattcgccaa atcccaacac aaagtcaacg acggctcgat
4501 cttcggtcct tggaaagcct gtcaaacttt agcccttatg catgactttg
4551 tcattctcag cttggggcct gtgaaaaaat accaacgact tttcgaccaa
4601 gctgaccgac cctcacacct ctacactcac tgcggcaaaa ccccgcagga
4651 tctttctctg tggtgttcag cccatctctc ccacaaaacc aaagtcacca
4701 atgactacac cgctttcgac caatcccaac acggagaatc cgtcattctc
4751 gaagctctga aaatgaagcg cctctccatc cctgagcacc taatcctcct
4801 tcacatccac ctgaagacca acgtctccac ccaattcgga cccctcacct
4851 gcatgcgcct tactggagag cccggcactt acgacgacaa cactgactat
4901 aacattgccg tgctctactc tcaatacaac ctgcaaaaca cccctgtcat
4951 ggtctctgga gacgattcgc tcatcgactc caaatgcccc gaactcctct
5001 cctggcccac aatccaatcc aaactgcatc tccgcttcaa gaccgaaacc
5051 actgactatc ccctgttctg cggctactac gtcggctcat ccggagccat
5101 ccgcaacccc ctcgctctgt tcgctaagct aatgatcgct atagacgacc
5151 agtctatcag cgagaagagg cttagttaca taactgaatt ctcagtcgga
5201 cattcacttg gtgactcttt ctgggatctc ctccccagcg agattcatcc
5251 gtaccaaagt gcctgtttcg actatttctg cagaaactcc cccccccatg
5301 aaaaatccat actgcacaac ctccccttca gccccacagc tctctccact
5351 atcaccagct ccattaaatg gctctccaaa tctgctttct ccgctctgcc
5401 catgcgaatc cgccgagcag ccatagagaa gtctcaatta ccctcttccc
5451 acgagaaccc agaagtttcc cgtctagagt ctgaattgct tcacaatttt
5501 caatagacaa tggaaactga acgagtcctc gtcacccaac ccgccatttc
5551 cactcaaacc gaccttttgt ccatcccttc ttctcccaac ccacccacta
5601 tcacccagcc tttccaaatc gagatcgccg cactaggcaa agagtcttat
5651 tcagactcca tcagcgtggc cgctctctcc tccatcgctg cctacaccag
5701 cctctacaaa catgccgagc tccattcgct ctcggcaact atccacccta
5751 ccaattcagc cccctccaac ccgaccgccg tcgccctcgc ttgggtaccc
5801 tacaactccg ccgcttcacc cactcagatt ctgagtgtgt atggcggcat
5851 gatgttttgc atcggcggct ccatccaaac tcttaagcct atcgaggttc
5901 tctgtgatct ctccaaggtc aatccgatcc tcaaaagcaa cgtcaccttc
5951 tctgacactc ccaaattact catccagtca gtagctcctg accccccctc
6001 caaactccca acttgctcta tcaccatcaa aggcatgatc cgccttcact
6051 ctcctctcct ccaagcttcg gcctgagctc tcaaggtcac agctcgcgag
6101 tgcgaggcct gctaccctca cacagcaggt attggggtgc gactcccccg
6151 tctattccgg acgtcaccgg aacca