Sequence of DPV Turnip yellows virus

Turnip yellows virus isolate 1pCP coat protein gene, partial cds; and movement protein gene, complete cds.

ACC No: HQ543077

Dated: 2013-01-28 | Length: 573 | CRC: 1956747288

                
ID   HQ543077; SV 1; linear; genomic RNA; STD; VRL; 573 BP.
XX
AC   HQ543077;
XX
DT   13-JUN-2011 (Rel. 109, Created)
DT   28-JAN-2013 (Rel. 115, Last updated, Version 2)
XX
DE   Turnip yellows virus isolate 1pCP coat protein gene, partial cds; and
DE   movement protein gene, complete cds.
XX
KW   .
XX
OS   Turnip yellows virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC   Polerovirus.
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RN   [1]
RP   1-573
RA   Dann A.L., Wilson C.R.;
RT   "Molecular survey of Poleroviruses (Luteoviridae) infecting peas (Pisum
RT   sativum L.) and broccoli (Brassica oleracea var. italica) in Tasmania";
RL   Unpublished.
XX
RN   [2]
RP   1-573
RA   Dann A.L., Wilson C.R.;
RT   ;
RL   Submitted (05-NOV-2010) to the INSDC.
RL   Tasmanian Institute of Agricultural Research, University of Tasmania, 13 St
RL   Johns Avenue, New Town, Tasmania 7008, Australia
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .573
FT                   /organism="Turnip yellows virus"
FT                   /host="Pisum sativum"
FT                   /isolate="1pCP"
FT                   /mol_type="genomic RNA"
FT                   /country="Australia"
FT                   /collected_by="Susan Lambert"
FT                   /collection_date="2009"
FT                   /db_xref="taxon:131083"
FT   CDS             1. .>573
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="P3"
FT                   /db_xref="GOA:F8S7V7"
FT                   /db_xref="InterPro:IPR001517"
FT                   /db_xref="UniProtKB/TrEMBL:F8S7V7"
FT                   /protein_id="AEH27549.1"
FT                   /translation="MNTGVGRRTINGRRRPRRQTRRAQRSQPVVVVQTSRTTQRRPRRR
FT                   RRGNNRTRGAASTRGASSSETFVFSKDNLAGSSSGAITFGPSLSDCPAFSNGILKAYHE
FT                   YKISMVILEFVSEASSQNSGSIAYELDPHCKLNSLSSTINKFGITKPGRRAFTASYING
FT                   AEWHDVAEDQFRILYKGNGSSRIAGSFR"
FT   CDS             32. .559
FT                   /codon_start=1
FT                   /product="movement protein"
FT                   /note="P4"
FT                   /db_xref="InterPro:IPR001964"
FT                   /db_xref="UniProtKB/TrEMBL:F8S7V8"
FT                   /protein_id="AEH27550.1"
FT                   /translation="MEEDDHGGKHDALSALSQWLWSKPLGQHNADLDDDEEVITGQEEL
FT                   LLPEEQAQARHLFSRKTISREVPAEQSRSGRVYQTAQHSLMEYSRPTMSIKSRWSFWSS
FT                   SPKPLPKTPVPSLTSWTHTVNSTPFPQLSTNSGSQSPGGGRLQRLTSTGRNGTTLPKTN
FT                   SGSSTKAMVLHE"
XX
SQ   Sequence 573 BP; 163 A; 153 C; 140 G; 117 T; 0 other;

hq543077 Length: 573  28-JAN-2013  Type: N  Check: 6217  ..

       1  atgaataccg gcgtgggtag gagaacaatc aatggaagaa gacgaccacg
      51  gaggcaaaca cgacgcgctc agcgctctca gccagtggtt gtggtccaaa
     101  cctctcggac aacacaacgc cgacctagac gacgacgaag aggtaataac
     151  cggacaagag gagctgcttc taccagagga gcaagctcaa gcgagacatt
     201  tgttttctcg aaagacaatc tcgcgggaag ttccagcgga gcaatcacgt
     251  tcgggccgag tctatcagac tgcccagcat tctctaatgg aatactcaag
     301  gcctaccatg agtataaaat ctcgatggtc attttggagt tcgtctccga
     351  agcctcttcc caaaactccg gttccatcgc ttacgagctg gacccacact
     401  gtaaactcaa ctccctttcc tcaactatca acaaattcgg gatcacaaag
     451  cccgggagga gggcgtttac agcgtcttac atcaacgggg cggaatggca
     501  cgacgttgcc gaagaccaat tcaggatcct ctacaaaggc aatggttctt
     551  cacgaatagc tggttctttt aga