Sequence of DPV Turnip yellows virus

Turnip yellows virus isolate 38bCP coat protein gene, partial cds; and movement protein gene, complete cds.

ACC No: HQ543098

Dated: 2013-01-28 | Length: 564 | CRC: 27281015

                
ID   HQ543098; SV 1; linear; genomic RNA; STD; VRL; 564 BP.
XX
AC   HQ543098;
XX
DT   13-JUN-2011 (Rel. 109, Created)
DT   28-JAN-2013 (Rel. 115, Last updated, Version 2)
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DE   Turnip yellows virus isolate 38bCP coat protein gene, partial cds; and
DE   movement protein gene, complete cds.
XX
KW   .
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OS   Turnip yellows virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC   Polerovirus.
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RN   [1]
RP   1-564
RA   Dann A.L., Wilson C.R.;
RT   "Molecular survey of Poleroviruses (Luteoviridae) infecting peas (Pisum
RT   sativum L.) and broccoli (Brassica oleracea var. italica) in Tasmania";
RL   Unpublished.
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RN   [2]
RP   1-564
RA   Dann A.L., Wilson C.R.;
RT   ;
RL   Submitted (05-NOV-2010) to the INSDC.
RL   Tasmanian Institute of Agricultural Research, University of Tasmania, 13 St
RL   Johns Avenue, New Town, Tasmania 7008, Australia
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FH   Key             Location/Qualifiers
FH
FT   source          1. .564
FT                   /organism="Turnip yellows virus"
FT                   /host="Brassica oleracea var. italica"
FT                   /isolate="38bCP"
FT                   /mol_type="genomic RNA"
FT                   /country="Australia"
FT                   /collected_by="Susan Lambert"
FT                   /collection_date="21-Apr-2010"
FT                   /db_xref="taxon:131083"
FT   CDS             1. .>564
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="P3"
FT                   /db_xref="GOA:F8S7Z9"
FT                   /db_xref="InterPro:IPR001517"
FT                   /db_xref="UniProtKB/TrEMBL:F8S7Z9"
FT                   /protein_id="AEH27591.1"
FT                   /translation="MNTVVGRRTINGRRRPRRQTRRTQRSQPVVVVQASRTTQRRPRRR
FT                   RRGNNRTGRTVPTRGAGSSETFVFSKDNLAGSSSGAITFGPSLSDCPAFSNGILKAYHE
FT                   YKISMVILEFVSEASSQNSGSIAYELDPHCKLNSLSSTINKFGITKPGRKTFTASFING
FT                   IEWHDVAEDQFRILYKGNGSSSIAG"
FT   CDS             32. .559
FT                   /codon_start=1
FT                   /product="movement protein"
FT                   /note="P4"
FT                   /db_xref="InterPro:IPR001964"
FT                   /db_xref="UniProtKB/TrEMBL:F8S800"
FT                   /protein_id="AEH27592.1"
FT                   /translation="MGEDDHAGKQGALSALSQWLWSKPLGQHNADLDDDEEVTTGQEEL
FT                   FLPEEQVQARHLFSQKTISREVPAEQSRSGRVYQTARHSLMEYSRPTMSIKSQWSFWSS
FT                   SPKPLPKIPVPSLTSWTHTVNSIHSPQRLTNSGSQSPGGKRLQRLSSTGSNGMTLPRTN
FT                   SGSSTKAMVLHR"
XX
SQ   Sequence 564 BP; 164 A; 148 C; 136 G; 116 T; 0 other;

hq543098 Length: 564  28-JAN-2013  Type: N  Check: 9995  ..

       1  atgaatacgg tcgtgggtag gagaacaatc aatgggagaa gacgaccacg
      51  caggcaaaca aggcgcactc agcgctctca gccagtggtt gtggtccaag
     101  cctctcggac aacacaacgc cgacctagac gacgacgaag aggtaacaac
     151  cggacaggaa gaactgttcc taccagagga gcaggttcaa gcgagacatt
     201  tgttttctca aaagacaatc tcgcgggaag ttccagcgga gcaatcacgt
     251  tcgggccgag tctatcagac tgcccggcat tctctaatgg aatactcaag
     301  gcctaccatg agtataaaat ctcaatggtc attctggagt tcgtctccga
     351  agcctcttcc caaaattccg gttccatcgc ttacgagctg gacccacact
     401  gtaaactcaa ttcactctcc tcaacgatta acaaattcgg gatcacaaag
     451  cccgggagga aaacgtttac agcgtctttc atcaacggga tcgaatggca
     501  tgacgttgcc gaggaccaat tcaggatcct ctacaaaggc aatggttctt
     551  catcgatagc tgga