Sequence of DPV Tobacco curly shoot virus

Tobacco curly shoot virus isolate SILIGURI-1 pre-coat protein (AV2) gene, complete cds; and coat protein (AV1) gene, partial cds.

ACC No: HQ597031

Dated: 2011-05-25 | Length: 507 | CRC: 1389543127

                
ID   HQ597031; SV 1; linear; genomic DNA; STD; VRL; 507 BP.
XX
AC   HQ597031;
XX
DT   25-MAY-2011 (Rel. 108, Created)
DT   25-MAY-2011 (Rel. 108, Last updated, Version 1)
XX
DE   Tobacco curly shoot virus isolate SILIGURI-1 pre-coat protein (AV2) gene,
DE   complete cds; and coat protein (AV1) gene, partial cds.
XX
KW   .
XX
OS   Tobacco curly shoot virus
OC   Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-507
RA   Saha A., Saha B., Saha D.;
RT   "Geminiviruses infecting cultivated tomato plants of sub-Himalayan plains
RT   of East-India: occurrence, detection, host range and diversity analysis";
RL   Unpublished.
XX
RN   [2]
RP   1-507
RA   Saha B., Saha A., Saha D.;
RT   ;
RL   Submitted (12-NOV-2010) to the INSDC.
RL   Department of Botany, University of North Bengal, Siliguri, West Bengal
RL   734013, India
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .507
FT                   /organism="Tobacco curly shoot virus"
FT                   /segment="DNA-A"
FT                   /host="Lycopersicon esculentum L."
FT                   /isolate="SILIGURI-1"
FT                   /mol_type="genomic DNA"
FT                   /country="India:West Bengal: Siliguri"
FT                   /collected_by="Bikram Saha"
FT                   /collection_date="Dec-2009"
FT                   /PCR_primers="fwd_seq: taatattacckgwkgvccsc, rev_seq:
FT                   tggacyttrcawggbccttcaca"
FT                   /db_xref="taxon:180526"
FT   gene            122. .469
FT                   /gene="AV2"
FT   CDS             122. .469
FT                   /codon_start=1
FT                   /gene="AV2"
FT                   /product="pre-coat protein"
FT                   /note="structural protein"
FT                   /protein_id="AEF38351.1"
FT                   /translation="MWDPLVNEFPETVHGFRCMLAVKYLQLVEKTYSPDTLGHDLIRDL
FT                   ISVIRARNYVEASSRYNHFHARFEGTPPSQLRQPICEPCCCPHCPRHQSKSMGEQAHEQ
FT                   KTQDVQDVQKS"
FT   gene            282. .>507
FT                   /gene="AV1"
FT   CDS             282. .>507
FT                   /codon_start=1
FT                   /gene="AV1"
FT                   /product="coat protein"
FT                   /note="structural protein"
FT                   /protein_id="AEF38352.1"
FT                   /translation="MSKRPADIIISTPASKVRRRLNFDSPYVSRAAAPIVRVTKARAWA
FT                   NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQ"
XX
SQ   Sequence 507 BP; 136 A; 118 C; 115 G; 138 T; 0 other;

hq597031 Length: 507  25-MAY-2011  Type: N  Check: 4653  ..

       1  tgattttttt taaagtgggc cccttgatgt gatatgtcat tcaatcagaa
      51  cgctccccta aagcttaatt gttttgtggt cccttattta tacttgctct
     101  gcaagtagtg cactccgcac tatgtgggat ccattagtaa acgagtttcc
     151  cgaaaccgtt cacggcttta ggtgtatgtt agcagttaaa tatctgcagt
     201  tagtagagaa aacgtattct cccgacacat tagggcacga tttaattagg
     251  gatttaattt cagttattag ggctagaaat tatgtcgaag cgtccagcag
     301  atataatcat ttccacgccc gcttcgaagg tacgccgccg tctcaacttc
     351  gacagcccat atgtgagccg tgctgctgcc cccattgtcc gcgtcaccaa
     401  agcaagagca tgggcgaaca ggcccatgaa cagaaaaccc aggatgtaca
     451  ggatgtacag aagtcctgat gtccctagag gatgtgaagg gccatgcaaa
     501  gtccaac