Sequence of DPV Tomato severe rugose virus
Tomato severe rugose virus isolate Pi-1 segment DNA B, complete sequence.
ACC No: HQ606468
Dated: 2011-05-31 | Length: 2569 | CRC: -1823741033
ID HQ606468; SV 1; circular; genomic DNA; STD; VRL; 2569 BP.
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AC HQ606468;
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DT 31-MAY-2011 (Rel. 109, Created)
DT 31-MAY-2011 (Rel. 109, Last updated, Version 1)
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DE Tomato severe rugose virus isolate Pi-1 segment DNA B, complete sequence.
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KW .
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OS Tomato severe rugose virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2569
RA Barbosa J.C., Barreto S.S., Inoue-Nagata A.K., Rezende J.A.M.;
RT "Complete molecular characterization of tomato isolate of Tomato severe
RT rugose virus and experimental host range in Brazil";
RL Unpublished.
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RN [2]
RP 1-2569
RA Barbosa J.C., Barreto S.S., Inoue-Nagata A.K., Rezende J.A.M.;
RT ;
RL Submitted (13-NOV-2010) to the INSDC.
RL Plant Pathology and Nematology, Esalq/USP, Padua dias, 11, Piracicaba, Sao
RL Paulo 13418-900, Brazil
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CC GenBank Accession Numbers HQ606467-HQ606468 represent the complete
CC genome of Tomato severe rugose virus isolate Pi-1.
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FH Key Location/Qualifiers
FH
FT source 1. .2569
FT /organism="Tomato severe rugose virus"
FT /segment="DNA B"
FT /host="tomato"
FT /isolate="Pi-1"
FT /mol_type="genomic DNA"
FT /country="Brazil"
FT /collected_by="Julio C. Barbosa"
FT /collection_date="Oct-2007"
FT /db_xref="taxon:158463"
FT gene 408. .1178
FT /gene="BV1"
FT CDS 408. .1178
FT /codon_start=1
FT /gene="BV1"
FT /product="nuclear shuttle protein"
FT /protein_id="AEG20852.1"
FT /translation="MYPIKYRRGMSFNHRRSYSSNPVFKRLHGAKRSDFKRRSSNQIKS
FT MDETKMSVQRIHENQFGPEFVIGHNSAISTFITFPTLCKTVPNRCRSYIKLRRLRFKGT
FT IKIDRVHAEVNMDGTSPMIEGVFSLVVVVDRKPHLGSSGTLHSFDEIFGARIHSHGNLA
FT IVSSLKERFYIRHVWKKVISVEKDTTMVDVEGSTILSNRRFNCWSSFKDIDRESCNGVY
FT ANISKNALLVYYCWMSDNVSKASTFVSFDLDYVG"
FT gene complement(1304. .2185)
FT /gene="BC1"
FT CDS complement(1304. .2185)
FT /codon_start=1
FT /gene="BC1"
FT /product="movement protein"
FT /protein_id="AEG20853.1"
FT /translation="MESQLVNPPNAFNYIESKRDEYQLSHDLTEIMLQFPSTASQLSAR
FT LSRSCMKIDHCVIEYRQQVPINAVGSVIVEIHDKRMTDNESLQASWTFPIRCNIDLHYF
FT SSSFFSLKDPIPWKLYYRVCDTNVHQSTHFAKFKGRLKLSTAKHSVDIPFRAPTVKILS
FT KQFTDKDIDFSHVGYGKWERKMIRSASISRLGLHNPLEIMPGESWAVRSTVGLSPSEAG
FT SDIENAMHPYRQLHRLGTGTLDPGDSASVIGAQRAQSNITLSMAQLNELVKAAAHECIN
FT SNCTPSQPKSLK"
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SQ Sequence 2569 BP; 735 A; 441 C; 535 G; 858 T; 0 other;
hq606468 Length: 2569 31-MAY-2011 Type: N Check: 4568 ..
1 accggatggc cgcgcgattt ttcttaactg ctacgtggcg aaatcgtgta
51 cgttgcctcg cgctttccat tttaattgag cgcattttga agtccgcgaa
101 atgagttaat tgtatttttg aaatccgctt ttgtgaatca cctttaattt
151 gaattaaagg ttggatagtt cgtattgatc aatcatttcg ctggtttatt
201 tcctgtcgtg gtgtaattac aaccgttcgt taaaaatata agaaatttac
251 gacgtggact ctctaaattt catctacaca gttaatttga caaatgaatg
301 catatttaaa ctatgctttc gtgtgggttt acaccacgtc tatacatatt
351 gtctaggtta ttttgtctaa gtataatttt tattttgtct tatcttatta
401 tctgaacatg tatcccatta agtatagacg tggaatgtcg tttaatcatc
451 gacgatctta ctcatctaat cccgtattta agcgtttaca cggagcgaaa
501 cgaagtgatt tcaagcgtcg ttcgagtaat cagattaaga gcatggatga
551 gactaaaatg tctgttcagc ggattcatga gaaccagttt ggccctgaat
601 ttgtaattgg acacaattct gccatatcca cattcattac attccctact
651 ctttgtaaga ctgtcccgaa ccgttgtagg tcatacataa agttaagacg
701 actacgtttt aaaggaacaa tcaagattga ccgtgttcat gctgaggtga
751 atatggacgg tacaagtcca atgattgaag gagtcttctc tctggttgta
801 gtcgttgatc gcaaacctca tttgggctca tctggaactc tgcattcttt
851 tgatgagata tttggtgcaa ggattcatag tcatggtaac ctggcaatag
901 tatcctctct gaaagagcgt ttttacatac gtcacgtttg gaagaaagta
951 atatctgttg agaaggatac aaccatggtt gatgttgaag gaagtactat
1001 tttatctaac aggcgtttta attgttggtc atcctttaag gatattgacc
1051 gtgaatcatg taatggtgtt tatgcaaaca taagcaagaa cgccctgtta
1101 gtttattact gttggatgtc tgataatgtg tctaaggcat cgacatttgt
1151 atcatttgac cttgattatg ttggctaaat aataagtgta atatgtgatt
1201 agtaataatg tttaactcgc ttcaataata aatacaagaa tttgttcagt
1251 aataatattc aactcgcaat aataacaaaa aaatgtgttt aataatatag
1301 aatttatttt aaagattttg gctgtgaagg agtacagttg ctgtttatac
1351 attcatgggc cgctgcttta acaagttcgt ttaattgggc cattgacagt
1401 gttatgttcg attgggccct ttgagcacca attacggacg cagaatcacc
1451 tgggtctaaa gtgcctgtac ccagtctatg taattgtctg tatggatgca
1501 tcgcgttctc tatatctgag cccgcctctg atgggcttaa gcctacagta
1551 cttctaacag cccatgactc tccgggcatt atttcaagtg ggttgtgaag
1601 gcccaatctt gatattgagg cggatctgat catcttcctt tcccatttgc
1651 catagcctac gtgactgaaa tcaatgtcct tatctgtaaa ttgttttgaa
1701 aggatcttca ccgttggggc acggaaaggt atatcaaccg aatgtttagc
1751 cgtcgagagt ttcagtctcc ctttgaattt agcgaagtgg gtactctggt
1801 gaacgttcgt gtcacatact ctgtagtaca atttccatgg aattgggtcc
1851 ttaagggaga agaacgacga cgaaaagtag tgaagatcta tgttacatct
1901 gataggaaag gtccacgacg cctgtagtga ttcattgtcc gtcattcttt
1951 tgtcatgaat ttcgactata actgaaccta cggcgtttat tggtacctgt
2001 tgtctgtatt ctattacgca atggtcgatt ttcatacagc tacgactaag
2051 ccttgcgctt aattgagacg ccgttgaagg gaattgaagc ataatctcgg
2101 ttagatcatg ggaaagctga tattcatcac gcttagattc tatataatta
2151 aatgcgttgg gaggattcac aagctgagat tccattattg aaaataggga
2201 gcgcagcgac aatgtttgag gaaacttaat aagggaagat gataatattt
2251 tcgtcaactg aatatatgac aagaaaattg tctgttgatc caattggaaa
2301 attggagatg ataataacta aaaaacgagg aatcagaaga agacgaattg
2351 agatgagata ttgtctattt tcggtgtaat tgataaatac ttctccattt
2401 gctctttaaa tagatttttt aaggcaatgg catatttgta aatatgaccc
2451 ttactaccaa ttggtagctg ctctaaaact catatgaatt ggtagttatg
2501 gtagctctta tatagtagaa gttctttcta aggagattgc tacacgtggc
2551 ggccatccgt tataatatt