Sequence of DPV Pepino mosaic virus
Pepino mosaic virus isolate P19, complete genome.
ACC No: HQ650559
Dated: 2011-06-30 | Length: 6412 | CRC: 448372784
ID HQ650559; SV 1; linear; genomic RNA; STD; VRL; 6412 BP.
XX
AC HQ650559;
XX
DT 18-APR-2011 (Rel. 108, Created)
DT 30-JUN-2011 (Rel. 109, Last updated, Version 2)
XX
DE Pepino mosaic virus isolate P19, complete genome.
XX
KW .
XX
OS Pepino mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales;
OC Alphaflexiviridae; Potexvirus.
XX
RN [1]
RP 1-6412
RX PUBMED; 21536084.
RA Hasiow-Jaroszewska B., Borodynko N., Jackowiak P., Figlerowicz M.,
RA Pospieszny H.;
RT "Single mutation converts mild pathotype of the Pepino mosaic virus into
RT necrotic one";
RL Virus Res. 159(1):57-61(2011).
XX
RN [2]
RP 1-6412
RA Hasiow-Jaroszewska B., Borodynko N., Pospieszny H.;
RT ;
RL Submitted (25-NOV-2010) to the INSDC.
RL Virology and Bacteriology, Institute of Plant Protection-National Research
RL Institute, Wegorka 20, Poznan 60-318, Poland
XX
FH Key Location/Qualifiers
FH
FT source 1. .6412
FT /organism="Pepino mosaic virus"
FT /host="Solanum lycopersicum"
FT /isolate="P19"
FT /mol_type="genomic RNA"
FT /country="Poland"
FT /collection_date="2007"
FT /note="genotype: CH2"
FT /db_xref="taxon:112229"
FT CDS 86. .4402
FT /codon_start=1
FT /product="RdRp"
FT /protein_id="AEB54593.1"
FT /translation="MSRVRNTIEKIRDPQVQSSICEAAYQHVRPVLKESLINCPYALND
FT YEADTLENLGVTINPHAIQTHTHAAAKVVENRMLEIVGHHLPKDEKVTFIFLKRSKLRY
FT MRRAAVHKDVFVNHNIEPKDFFRYDEESTSTSFSVNTRIAYISDSLHFMEPADVTHLFD
FT RCHNLKTLMATVVLPVEAIHKQTSLFPAIYSINYNEEGFEYIPGSHGGGAYFHKYETLD
FT WLKYSRFVGQDPLTGLRYTITIQMVESLGANHLFLFQRGNFETPLYRTFQKNSFVTFPN
FT IFHPQHVNATKPMPRSRAIQLYLYVKSVNKVTQRDIFAKVRQLISTAELELYDPDELTH
FT IVNYFAYVSELSSINDYDNMLKSSFFKKLVAPMQHDWRCMIEFFRGKSDFNQLLTALQW
FT KDFSYTIKTEELVIATHTEIGQAICKAATTYKERRQLTNLVKQGAVTLADFKEADQHVE
FT YTHFDPEFKSTVDPHRSYENAINNLGIEINEDVPESSGTNETLLNNEISLAMSSSEHVQ
FT AVQEIESLLSNPEAAPILPPANVKTWASLASDTSSTKNREIEDIVAKLEIQRNEASCSY
FT LQPNKELSKPKAADNNLPWNAWIPLLNAHGFKGDQLQYGPDGNLIQPIQDINNSQPRSD
FT YPSSLPCELVETLRKIKRAVYAIPISHRRASAYSSDIKNNRTGKLLCNQSKEWKESFAF
FT KMQHEDIVKSGVVIHGCGGSGKSQALQNFLRTLGDSNDCCTVVVPTVELRNDWVNKLHK
FT LPMEHIKTFEKAMIQPGFPIVIFDDYTKLPPGYIEAYLFHHANTELFILTGDSRQSVYH
FT ESNNEAYIASLDEAVAYYANYCGFYLNATHRNVRSLANKLGVYSEKEGHLKITFASHAL
FT QKCKVPILVPSQMKKNAMLDIGHKSMTYAGCQGLTAPRVQILLDNHTQHCSDRVLYTCL
FT SRAVDSIHFINTGPNNSEFWDKLEATPYLKAFIDVYRDEKTEMLNSKPADDSPTEPEAP
FT VTHFPIANGNNLEKLASALPEKFAREIYDQHHGHSNTIQTENPVVQLFQHQQAKDETLF
FT WATIEARLSITTPEANLREFLLKKDVGDILFFNYHNAMCLPADPVDFEEKTWEICAAEV
FT KNTYLAKPMANLINAASRQSPDFDSNKISLFLKSQWVKKVEKLGAIKSKPGQTIAAFMQ
FT QTVMLYGTMARYLRKMRQRFQPKHIFINCETTTDDLNKFVIDGWNFNRTAQTNDFTAFD
FT QSQDGAMLQFEVMKAKFFNIPADVIEGYINIKLNAKIFLGTLSIMRLSGEGPTFDANTE
FT CSIAYTATRFHIDNTVKQVYAGDDMALDGVVSEKKSFRKLQNLLKLTSKTLYPTQIKGD
FT YAEFCGWTFTPGGIIKNPLKMHASIMLQEAIGNLHTAARSYAIDMKHSYQMGDQLHDYL
FT TPDEAEQHFLAVRKLHKLHQGEAMRLGEKSPPRSTH"
FT CDS 4428. .5132
FT /codon_start=1
FT /product="TGB1"
FT /protein_id="AEB54594.1"
FT /translation="MERSTLINLLLLHKFEHKINTEGIIVVHGIAGTGKTTLLRTLFSA
FT YPSLVIGSPRPCYLDKANKISQVCLSCFPNTLCDIVDEYHLLESFPEPKLAIFGDPCQC
FT TYIDRLRTPNYTSFRTHRFGKSTAALLNKLFDLNIESVKAQDDTVEYFDPFAVDPSEHI
FT SASEKEVLEFVGDQVETTSSEELAGLEFSEVTFYCTTLAGAVQENPAKTFISLTRHTSK
FT LTIGELNARSDS"
FT CDS 5113. .5484
FT /codon_start=1
FT /product="TGB2"
FT /protein_id="AEB54595.1"
FT /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL
FT PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSFSISRNTHQH
FT HCYNTHSATQTGQSVPGHH"
FT CDS 5336. .5584
FT /codon_start=1
FT /product="TGB3"
FT /protein_id="AEB54596.1"
FT /translation="MSSYLSSFLHWVLSSPINLVLALAVILTSIIATTHILQPKQVNQC
FT QVIIDGAAIVITNCPNTPEVLEAINFSPWNGLSFPQL"
FT CDS 5630. .6343
FT /codon_start=1
FT /product="CP"
FT /protein_id="AEB54597.1"
FT /translation="MENQPTASNPSDAPPTAAQAGAQSPADFSNPNTAPSLSDLKKIKY
FT VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN
FT PALSRRALAAQFDRINITPRQFCMYFAKIVWNILLDSNVPPANWAKLGYQEDTKFAAFD
FT FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM
FT GGANTMYAIDAPPEL"
XX
SQ Sequence 6412 BP; 2051 A; 1460 C; 1156 G; 1745 T; 0 other;
hq650559 Length: 6412 30-JUN-2011 Type: N Check: 3766 ..
1 gaaaacaaaa cataacacat aatatcaaaa gtgacctaac acaacataac
51 cacgtggaaa aacagcgaaa gcactttacc acattatgtc tcgtgttaga
101 aacactatag aaaagatcag ggacccacaa gtacaatcta gcatatgtga
151 agccgcttac caacatgtta gacctgtgct caaggaatcc ctaatcaact
201 gtccttatgc gcttaacgac tatgaagcag acaccctaga gaatttaggt
251 gtcacaataa acccccatgc aatccaaaca catactcatg cggcagctaa
301 agttgtggaa aatagaatgc tcgaaattgt tggacaccac ttgcccaagg
351 acgagaaagt taccttcatt ttcctcaaaa gaagcaaact gagatacatg
401 cgaagagctg ctgtacataa agatgttttt gttaatcaca atatagaacc
451 caaggatttc ttcaggtatg atgaggaatc tacatctact agtttctctg
501 tgaacaccag gatcgcttac atctccgatt ctctacattt catggaacca
551 gctgatgtga cccacctctt tgaccgttgc cacaatctta aaacactgat
601 ggcaactgtc gttttacctg ttgaagccat ccacaaacaa acatctttat
651 ttccagcgat atactccatt aattacaatg aagaaggttt tgagtatatc
701 cctggttctc atggtggagg ggcatacttt cataagtatg aaacattaga
751 ctggctcaaa tactctagat ttgttggcca ggacccctta actggactcc
801 gatacaccat aaccattcaa atggtagaga gtttaggagc caaccatctt
851 ttcctcttcc aaagaggaaa ttttgaaaca cctttatata ggacgtttca
901 aaaaaatagc tttgtgacct ttcctaacat cttccatccc caacatgtta
951 atgccacaaa gcccatgcca agatccaggg caattcagct gtatttatat
1001 gttaaatctg tcaataaggt gacacaaaga gatatctttg cgaaagtaag
1051 gcaacttata tctacagctg aacttgaatt gtatgacccg gatgaactta
1101 cacatattgt caattatttc gcatatgtct cagaactaag ctcaatcaac
1151 gactatgaca atatgctcaa atcaagtttt ttcaaaaaac ttgttgcacc
1201 catgcaacat gactggaggt gcatgattga attctttcgg ggaaaaagtg
1251 atttcaatca acttttaact gctcttcaat ggaaagactt ctcttacacc
1301 attaaaactg aagagttagt tattgctaca cacactgaaa ttggccaggc
1351 aatctgtaaa gctgcgacca catacaaaga aaggagacaa ttgaccaatt
1401 tagtcaaaca aggcgcagta acattagctg atttcaaaga agcggaccag
1451 catgtggagt acactcactt tgatcctgag tttaaatcca ctgttgaccc
1501 ccaccgaagc tatgaaaatg ccatcaacaa tcttggcatt gagattaatg
1551 aggatgtacc tgaaagttcc ggcactaatg aaacattgct taacaatgaa
1601 atatctttag caatgtcatc ttctgaacat gtgcaagctg ttcaagaaat
1651 tgagtctcta ctctcaaacc ccgaagcggc accaatattg ccccctgcaa
1701 atgttaaaac atgggctagc cttgcatctg acacttccag cactaaaaac
1751 cgtgaaatcg aagatatagt ggctaagctg gaaatacaaa gaaatgaagc
1801 tagttgcagc taccttcaac caaataagga attgtcaaaa cccaaggctg
1851 ctgataacaa tctcccctgg aatgcttgga tcccattgct taatgcacac
1901 ggcttcaaag gggatcaatt acaatacggc ccagatggta acttgataca
1951 gcccatccaa gacattaaca attcacagcc tagatctgac tatccgtctt
2001 ctctgccatg tgaacttgtg gaaactttga ggaaaattaa gcgtgctgtc
2051 tatgccatcc caataagcca caggagagct agtgcttaca gttctgacat
2101 caaaaataac agaactggca aacttctctg caaccaaagc aaagaatgga
2151 aagaaagctt tgctttcaaa atgcaacatg aagacatcgt caaatcaggt
2201 gttgtcatac atggttgcgg aggttctggc aaatcccagg cattacaaaa
2251 cttcttgaga acattgggtg attcaaatga ttgctgcact gttgtagtac
2301 ccactgttga acttagaaat gactgggtaa acaaactcca taaattgccc
2351 atggagcata tcaaaacatt tgagaaagca atgattcaac ctggctttcc
2401 aattgttata tttgatgatt acaccaagtt gccacctggc tacattgaag
2451 catacctatt tcaccatgcc aacactgagc ttttcatact tactggtgat
2501 tctaggcaaa gcgtgtacca tgaatctaac aatgaagcgt acattgcctc
2551 attagatgaa gctgttgcat actacgctaa ttactgcggt ttttatttaa
2601 atgctactca tagaaatgtc cgtagtttag ccaacaaact tggtgtttac
2651 agtgagaaag aaggacactt gaaaatcact tttgcttcac atgccttaca
2701 aaagtgcaaa gtgccaattt tagttccttc tcaaatgaaa aagaatgcta
2751 tgttagacat tggacataaa tccatgacct atgctggttg ccaaggttta
2801 acagcaccca gggtacaaat tctccttgat aaccacacgc aacattgttc
2851 tgacagagtt ctgtacacct gtctgtctcg tgcagttgat tccatccact
2901 tcatcaatac tggtcccaac aattcagaat tttgggataa gcttgaagca
2951 acaccatatc tcaaagcctt cattgatgtc tatagagatg aaaaaactga
3001 aatgctcaat tctaagcctg ctgatgacag tccaactgag cctgaagcac
3051 ctgttacaca tttcccaata gcaaatggaa ataacttaga gaaattagct
3101 tctgctttgc ctgaaaaatt tgctagggag atttatgacc agcatcatgg
3151 ccactccaac acaatccaaa ctgagaaccc tgtggtccaa cttttccaac
3201 atcaacaagc gaaagacgag acactctttt gggctacaat tgaagctaga
3251 ttgtccataa caactcctga agcaaacctc agagaatttt tgcttaagaa
3301 agatgttgga gacattctct tcttcaatta ccataatgcg atgtgcttgc
3351 ctgccgatcc tgtggacttt gaagaaaaga cctgggagat ctgtgctgct
3401 gaagtgaaaa acacttatct tgccaaaccc atggccaatc ttatcaatgc
3451 ggcaagtaga caatcacccg actttgactc taataagatc tcattattcc
3501 taaagtctca atgggtgaaa aaagtggaaa aacttggagc tatcaaatca
3551 aaacctggtc agaccatagc tgcttttatg caacaaacag tcatgttgta
3601 tggtactatg gccaggtact taaggaaaat gcggcaaaga ttccagccaa
3651 aacacatatt catcaattgt gaaaccacaa ctgatgatct caataaattt
3701 gtcatagatg gctggaactt taacagaacc gcccaaacaa atgacttcac
3751 tgcttttgat cagtcacaag atggagcaat gcttcaattt gaagtcatga
3801 aagcaaaatt ttttaacatt ccagctgatg tcattgaagg ctacatcaac
3851 atcaagctga atgctaaaat tttccttgga acactctcaa taatgagact
3901 ttctggtgaa ggtcccacat ttgacgctaa cactgagtgt tcgattgcat
3951 acactgccac aagattccat attgacaata ctgttaagca agtgtatgcc
4001 ggtgacgaca tggcattaga tggagttgtg agtgaaaaga aatcattcag
4051 gaagttacaa aatctactaa aactcacttc aaagacgctg tacccaacac
4101 agattaaagg ggattacgct gaattttgtg gttggacttt cacaccaggg
4151 ggtataatta aaaatccact taaaatgcat gcctcaatta tgctgcaaga
4201 agccattggt aatctgcaca cagcagccag atcttatgca attgacatga
4251 agcattcata ccaaatgggt gaccaactgc atgactacct aacccccgat
4301 gaagctgaac aacatttcct agctgtgaga aagcttcaca aactccatca
4351 aggcgaggcc atgcgtcttg gggagaaaag tccaccaaga tcaacccatt
4401 aaggggttaa gttttcccca gtttgaaatg gaaagatcaa ctttgatcaa
4451 tttacttctg ttacacaaat ttgaacacaa gattaacact gaaggaatca
4501 ttgttgtgca cggaattgct ggaactggga aaaccacatt gcttaggact
4551 ttattttctg cataccctag cttagttata ggttcaccta ggccttgtta
4601 cttagataaa gctaataaaa tttcacaagt ttgcctttct tgttttccaa
4651 ataccttgtg tgacattgtt gacgagtacc atctcttaga aagttttcct
4701 gaaccaaaac tagccatttt tggtgacccc tgtcagtgca cttacattga
4751 taggttgaga acacccaact acacatcctt cagaacacac cgatttggca
4801 aatccactgc tgctctacta aacaagttat ttgatcttaa cattgagtca
4851 gtcaaagcac aagacgacac agtagaatac tttgatcctt tcgcagtgga
4901 cccctccgaa cacatttctg cttcagaaaa agaagttttg gaatttgtag
4951 gtgatcaagt tgagactaca agctctgaag aactagctgg tctcgagttt
5001 agtgaagtta ctttctactg taccacactt gctggtgctg ttcaagaaaa
5051 tcctgccaaa accttcattt cactcactag acacacttca aagctcacaa
5101 ttggtgaact aaatgccagg tctgactcct agagctgatc ttactgacac
5151 gtataaaatc attgctatag cctttctact gtcagcttgc atttacttcc
5201 aaaacagtca ttatcaacca gttgcaggtg ataatttgca cagactaccc
5251 tttggtggtc agtatcaaga cggaactaag aagatttctt actttccgca
5301 acaacaatcc tactttcact caggaaacaa gcttaatgtc ctcatactta
5351 tcttcattct tacactgggt attgtcctca ccaataaatt tagttttagc
5401 attagccgta atactcacca gcatcattgc tacaacacac attctgcaac
5451 ccaaacaggt caatcagtgc caggtcatca ttgacggtgc agccatagtt
5501 ataacaaatt gtccaaacac acccgaagtt cttgaagcaa tcaacttctc
5551 cccttggaac gggttaagtt ttcctcaatt gtgaaattat atttgttatc
5601 tagttaaatt caaacaattt aactcaacta tggaaaacca acctacagct
5651 tctaacccat cagatgcacc accaactgct gctcaagctg gtgcccagag
5701 cccagccgac ttctcaaatc ctaatacagc tccttcccta agtgatttga
5751 agaagatcaa atacgtgtca actgtcactt cagttgccac gcctgctgaa
5801 attgaggccc ttggcaagat ctttactgcc atgggtttag cagccaatga
5851 gaccggacct gccatgtggg acctcgctcg tgcttatgct gatgtgcaaa
5901 gttcaaaatc tgcacaactt ataggtgcca caccatccaa ccctgctttg
5951 tctagacgtg cacttgctgc acagtttgat cgtatcaata tcacacccag
6001 acaattctgc atgtattttg caaaaattgt ttggaacata ctgttagaca
6051 gcaatgtgcc acctgccaac tgggcaaaat tgggctatca ggaagatacc
6101 aagtttgctg cttttgactt ctttgatgga gtcacaaatc cagctagtct
6151 acagcctgca gatggcctaa tcaggcagcc caatgaaaaa gagcttgctg
6201 ctcactcggt tgctaaatat ggcgcccttg cccgccagaa aatatccact
6251 ggtaactaca tcaccaccct tggtgaagtt acacgtggtc acatgggcgg
6301 cgccaacact atgtacgcaa ttgatgcacc tcctgaactt taaacactcg
6351 aaacttaacc agagtggggt tttctatagt ttattttccc ttagtatcta
6401 aatctactaa at