Sequence of DPV Pepino mosaic virus
Pepino mosaic virus isolate P22, complete genome.
ACC No: HQ650560
Dated: 2013-02-12 | Length: 6412 | CRC: -1090547331
ID HQ650560; SV 2; linear; genomic RNA; STD; VRL; 6412 BP.
XX
AC HQ650560;
XX
DT 18-APR-2011 (Rel. 108, Created)
DT 12-FEB-2013 (Rel. 115, Last updated, Version 3)
XX
DE Pepino mosaic virus isolate P22, complete genome.
XX
KW .
XX
OS Pepino mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales;
OC Alphaflexiviridae; Potexvirus.
XX
RN [1]
RP 1-6412
RX DOI; 10.1016/j.virusres.2011.04.008.
RX PUBMED; 21536084.
RA Hasiow-Jaroszewska B., Borodynko N., Jackowiak P., Figlerowicz M.,
RA Pospieszny H.;
RT "Single mutation converts mild pathotype of the Pepino mosaic virus into
RT necrotic one";
RL Virus Res. 159(1):57-61(2011).
XX
RN [2]
RP 1-6412
RA Hasiow-Jaroszewska B., Borodynko N., Pospieszny H.;
RT ;
RL Submitted (25-NOV-2010) to the INSDC.
RL Virology and Bacteriology, Institute of Plant Protection-National Research
RL Institute, Wegorka 20, Poznan 60-318, Poland
XX
RN [3]
RC Sequence update by submitter
RP 1-6412
RA Hasiow-Jaroszewska B., Borodynko N., Pospieszny H.;
RT ;
RL Submitted (08-FEB-2013) to the INSDC.
RL Virology and Bacteriology, Institute of Plant Protection-National Research
RL Institute, Wegorka 20, Poznan 60-318, Poland
XX
CC On Feb 8, 2013 this sequence version replaced gi:328879877.
XX
FH Key Location/Qualifiers
FH
FT source 1. .6412
FT /organism="Pepino mosaic virus"
FT /host="Solanum lycopersicum"
FT /isolate="P22"
FT /mol_type="genomic RNA"
FT /country="Poland"
FT /collection_date="2005"
FT /note="genotype: CH2"
FT /db_xref="taxon:112229"
FT CDS 86. .4402
FT /codon_start=1
FT /product="RdRp"
FT /db_xref="GOA:F5B6M4"
FT /db_xref="InterPro:IPR000606"
FT /db_xref="InterPro:IPR001788"
FT /db_xref="InterPro:IPR002588"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="UniProtKB/TrEMBL:F5B6M4"
FT /protein_id="AEB54598.1"
FT /translation="MSRVRNTIEKIRDPQVQSSICEAAYQHVRPVLKESLINCPYALND
FT YEADTLENLGVTINPHAIQTHTHAAAKVVENRMLEIVGHHLPKDEKVTYIFLKRSKLRY
FT MRRAAVHKDVFVNHNIEPKDFFRYDEESTSTSFSVNTRIAYISDSLHFMEPADVTHLFD
FT RCHNLKTLMATVVLPVEAIHKQTSLFPAIYSINYNEEGFEYIPGSHGGGAYFHKYETLD
FT WLKYSRFVGQDPLTGLRYTITIQMVESLGANHLFLFQRGNFETPLYRTFQKNSFVTFPN
FT IFHPQHVNATKPMPRSRAIQLYLYVKSVNKVTQRDIFAKVRQLISTAELELYDPDELTH
FT IVNYFAYVSELSSINDYDNMLKSSFFKKLVAPMQHDWRCMIEFFRGKSDFNQLLTALQW
FT KDFSYTIKTEELVVATHTEIGQAICEAATTYKERRQLTNLVKQGAVTLADFKEADQHVE
FT YTHFDPEFKSTVDPHQSYENAINNLGIEINEDVPENSGTNETLLNNVISLAMSSAEHVQ
FT AVQEIDSLLSNPEAAAILPPAHVKTWASLASDTSSTKNREIEDIVAKLEIQRNEASCSY
FT LQPNKELSKPKAAHNNLPWNAWIPLLNAHGFKGDQLQYGPDGNLIQPIQDINNSQPRSD
FT YPSSLPCELVETLRKIKRAVYAIPISHRRGSAYSSDIKNNRTGKLLCNQSKEWKESFAF
FT KMQHEDIVKSGVVIHGCGGSGKSQALQNFLRTLGDSNDCCTVVVPTVELRNDWVNKLHK
FT LPMEHIKTFEKAMIQPSFPIVIFDDYTKLPPGYIEAYLFHHANTELFILTGDFRQSVYH
FT ESNNEAYIASLDEAVAYYANYCGFYLNATHRNVRSLANKLGVYSEKEGHLKITFASHAL
FT QKCKVPILVPSQMKKSAMLDIGHKSMTYAGCQGLTAPRVQILLDNHTQHCSDRVLYTCL
FT SRAVDSIHFINTGPNNSEFWDKLEATPYLKAFIDVYRDEKTEMLNSKPADDSPTEPEAP
FT VTHFPIANGNNLEKLASALPEKFAREIYDQHHGHSNTIQTENPVVQLFQHQQAKDETLF
FT WATIEARLSITTPEANLREFLLKKDVGDILFFNYHNAMCLPADPVDFEEKTWEICAAEV
FT KNTYLAKPMANLINAASRQSPDFDSNKISLFLKSQWVKKVEKLGAIKSKPGQTIAAFMQ
FT QTVMLYGTMARYLRKMRQRFQPKHIFINCETTTDDLNKFVIDGWNFNRTAQTNDFTAFD
FT QSQDGAMLQFEVMKAKFFNIPADVIEGYINIKLNAKIFLGTLSLMRLSGEGPTLDANTE
FT CSIAYTATRFHIDNTVKQVYAGDDMALDGVVSEKKSFRKLQNLLKLTSKTLYPKQVKGD
FT YAEFCGWTFTPGGIIKNPLKMHASIMLQEAIGNLHTAARSYAIDMKHSYQMGDQLHDYL
FT TPDEAEQHILAVRKLHKLHQGEAMRLGEKSPPRSTH"
FT CDS 4428. .5132
FT /codon_start=1
FT /product="TGB1"
FT /db_xref="GOA:A3FMJ2"
FT /db_xref="InterPro:IPR000606"
FT /db_xref="UniProtKB/TrEMBL:A3FMJ2"
FT /protein_id="AEB54599.1"
FT /translation="MERSTLINLLLLHKFEHKINTEGIIVVHGIAGTGKTTLLRTLFSA
FT YPSLVIGSPRPCYLDKANKISQVCLSCFPNTLCDIVDEYHLLESFPEPKLAIFGDPCQC
FT TYIERLRTPNYTSFRTHRFGKSTAALLNQLFDLNIESVKAQDDTVEYFDPFAVDPSEHI
FT SASEKEVLEFVGDQVETTSSEELAGLEFSEVTFYCTTLGGAVQENPAKTFISLTRHTSK
FT LTIGELNARSDS"
FT CDS 5113. .5484
FT /codon_start=1
FT /product="TGB2"
FT /db_xref="InterPro:IPR001896"
FT /db_xref="UniProtKB/TrEMBL:Q699Z7"
FT /protein_id="AEB54600.1"
FT /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL
FT PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSFSISRNTHQH
FT HCYNTHSATQTGQSVPGHH"
FT CDS 5336. .5584
FT /codon_start=1
FT /product="TGB3"
FT /db_xref="InterPro:IPR003411"
FT /db_xref="UniProtKB/TrEMBL:Q334E8"
FT /protein_id="AEB54601.1"
FT /translation="MSSYLSSFLHWVLSSPINLVLALAVILTSIIATTHILQPKQVNQC
FT QVIIDGAAIVITNCPNTPEVLKAINFSPWNGLSFPQL"
FT CDS 5630. .6343
FT /codon_start=1
FT /product="CP"
FT /db_xref="GOA:A3FMJ5"
FT /db_xref="InterPro:IPR000052"
FT /db_xref="UniProtKB/TrEMBL:A3FMJ5"
FT /protein_id="AEB54602.1"
FT /translation="MENQPTASNPSDAPPTAAQAGAQSPADFSNPNTAPSLSDLKKIKY
FT VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN
FT PALSRRALAAQFDRINITPRQFCMYFAKIVWNILLDSNVPPANWAKLGYQEDTKFAALD
FT FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM
FT GGANTMYAIDAPPEL"
XX
SQ Sequence 6412 BP; 2051 A; 1466 C; 1158 G; 1737 T; 0 other;
hq650560 Length: 6412 12-FEB-2013 Type: N Check: 6044 ..
1 gaaaacaaaa cataacacat aatatcaaaa gtgacctaac acaacataac
51 cacgtggaaa aacagcgaaa gcactttacc acattatgtc tcgtgttaga
101 aacactatag aaaagatcag ggacccacaa gtacaatcta gcatttgtga
151 agccgcttac caacatgtca gacctgtgct caaggaatcc ctaatcaact
201 gtccttatgc gcttaatgac tatgaagcag acaccctaga gaatttaggt
251 gtcacaataa acccccatgc aatccaaaca catactcatg cggcagctaa
301 agttgtggaa aatagaatgc tcgaaattgt tggacaccac ttgcccaagg
351 acgagaaagt tacctacatt ttcctcaaaa gaagcaaact gagatacatg
401 cgaagagctg ctgtacataa agatgttttt gttaatcaca atatagaacc
451 caaggatttc ttcaggtatg atgaggaatc tacatctact agtttctccg
501 tgaacaccag gatcgcttac atctccgatt ctctacattt catggaacca
551 gctgatgtga cccacctctt tgaccgttgc cacaatctta aaacactgat
601 ggcaactgtc gttttacctg ttgaagccat ccacaaacaa acatctttat
651 ttccagcgat atactccatt aattacaatg aagaaggttt tgagtatatc
701 cctggttctc atggtggagg ggcatacttt cataagtatg aaacattaga
751 ctggctcaaa tactctagat ttgttggcca ggacccctta actggactcc
801 gatacaccat aaccattcaa atggtagaga gtttaggagc caaccatctt
851 ttcctcttcc aaagaggaaa ttttgaaaca cctttataca ggacgtttca
901 aaaaaatagc tttgtgacct ttcctaacat cttccatccc caacatgtta
951 atgccacaaa gcccatgcca agatccaggg caattcagct gtatttatat
1001 gtcaaatctg tcaataaggt gacacaaaga gatatctttg cgaaagtaag
1051 gcaacttata tctacagctg aacttgaatt gtatgaccct gatgaactta
1101 cacatattgt caattatttc gcatatgtct cagaactaag ctcaatcaac
1151 gactatgaca atatgctcaa atcaagtttt ttcaaaaaac ttgttgcacc
1201 catgcaacat gactggaggt gcatgattga attctttcgg ggaaaaagtg
1251 atttcaatca acttttaact gctcttcaat ggaaagactt ctcttacacc
1301 attaaaactg aagagttagt tgttgctaca cacactgaaa ttggccaggc
1351 aatctgtgaa gctgcgacca catacaaaga aagaagacaa ttgaccaatt
1401 tagtcaaaca aggcgcagta acattagctg atttcaaaga agcggaccag
1451 catgtggagt acactcactt tgatcctgag tttaaatcca ctgttgaccc
1501 ccaccagagc tatgaaaatg ccatcaacaa tcttggcatt gagattaatg
1551 aggatgtacc tgaaaattcc ggcactaatg aaacattgct taacaatgta
1601 atatctttag caatgtcatc tgctgaacat gtgcaagctg ttcaagaaat
1651 tgattcttta ctctctaacc ccgaagcggc agcaatattg ccccctgcac
1701 atgttaaaac atgggctagc cttgcatctg acacttccag cactaaaaac
1751 cgtgaaatcg aagatatagt ggctaagctg gaaatacaaa gaaatgaagc
1801 tagttgcagc taccttcaac caaataagga attgtcaaaa cccaaggctg
1851 ctcataacaa tctcccctgg aatgcttgga tcccattgct taatgcacac
1901 ggcttcaaag gggatcaatt acaatacggc ccagatggta acttgataca
1951 gcccatccaa gacattaaca attcacagcc tagatctgac tatccgtctt
2001 ctctgccatg tgaacttgtg gaaactttga ggaaaattaa gcgtgctgtt
2051 tatgccatcc caataagcca caggagaggt agtgcttaca gttctgacat
2101 caaaaataac agaactggca aacttctctg caaccaaagc aaagaatgga
2151 aagaaagctt tgctttcaaa atgcaacatg aagacatcgt caaatcaggt
2201 gttgtcatac atggttgcgg aggttctggc aaatcccagg cattacaaaa
2251 cttcttgaga acattgggtg attcaaatga ttgctgtact gttgtagtac
2301 ccactgttga acttagaaat gactgggtaa acaaactcca taaattgccc
2351 atggagcata tcaaaacatt tgagaaagca atgattcaac ctagctttcc
2401 aattgttata tttgatgatt acaccaagtt gccacctggc tacattgaag
2451 catacttatt tcaccatgcc aacactgagc ttttcatact tactggtgat
2501 tttaggcaaa gcgtgtacca tgaatctaac aatgaagcgt acattgcctc
2551 attagatgaa gctgttgcat actacgctaa ttactgcggt ttttatttaa
2601 atgctactca tagaaatgtc cgtagtttgg ccaacaaact tggtgtttac
2651 agtgagaaag aaggacactt gaaaatcact tttgcttcac atgccttaca
2701 aaagtgcaaa gtgccaattt tagttccttc tcaaatgaaa aagagtgcta
2751 tgttagacat tggacataaa tccatgacct atgctggttg ccaaggttta
2801 acagcaccca gggtacaaat tctccttgat aaccacacgc aacattgctc
2851 tgacagagtt ctgtacacct gtctgtctcg tgcagttgat tccatccatt
2901 tcatcaatac tggtcccaac aattcagaat tttgggataa gcttgaagca
2951 acaccatatc tcaaagcctt cattgatgtc tatagagatg aaaaaactga
3001 aatgctcaat tctaagcctg ctgatgacag tccaactgag cctgaagcac
3051 ctgttacaca tttcccaata gcaaatggaa ataacttaga gaaattagct
3101 tctgctttgc ctgaaaaatt tgctagggag atttatgacc agcatcacgg
3151 ccactccaac acaatccaaa ctgagaaccc tgtggtccaa cttttccaac
3201 atcaacaagc gaaagacgag acactctttt gggctacaat tgaagctaga
3251 ttgtccataa caactcctga agcaaacctc agagaatttt tgcttaagaa
3301 agatgttgga gacattctct tcttcaatta ccataatgcg atgtgcttgc
3351 ctgccgatcc tgtggacttt gaagaaaaga cctgggagat ctgtgctgct
3401 gaagtgaaaa acacttatct cgccaaaccc atggccaatc ttatcaatgc
3451 ggcaagtaga caatcacccg actttgactc taataagatc tcattattcc
3501 taaagtctca atgggtgaaa aaagtggaaa aacttggagc tatcaaatca
3551 aaacctggtc agaccatagc tgcttttatg caacaaacag tcatgttgta
3601 tggtactatg gccaggtact taaggaaaat gcggcaaaga ttccagccaa
3651 aacacatatt catcaattgt gaaaccacaa ctgatgatct caataaattt
3701 gtcatagatg gctggaactt taacagaacc gcccaaacaa atgacttcac
3751 tgcttttgat cagtcacaag atggagcaat gcttcaattt gaagtcatga
3801 aagcaaaatt ttttaacatt ccagctgatg tcattgaagg ctacatcaac
3851 atcaagctga atgctaaaat tttccttgga acactctctc taatgagact
3901 ttctggtgaa ggtcccacat tagacgctaa cactgagtgt tcgattgcat
3951 acactgccac aagattccat atagacaata ctgttaagca agtgtatgcc
4001 ggtgacgaca tggcattaga tggagttgtg agtgaaaaga aatcattcag
4051 gaagttacaa aatctactaa aactcacttc aaaaacgctg tacccaaaac
4101 aggttaaagg ggattacgct gaattttgtg gttggacttt cacaccaggg
4151 ggtataatta aaaatccact aaaaatgcat gcctcaatta tgctgcaaga
4201 agccattggc aatctgcaca cagcagccag atcttatgca attgacatga
4251 agcattcata ccaaatgggt gaccaactgc atgactacct aacccccgat
4301 gaagctgaac aacatatcct agctgtgaga aagcttcaca aactccatca
4351 aggcgaggcc atgcgtctag gggagaaaag tccaccaaga tcaacccatt
4401 aaggggttaa gttttcccca gtttgaaatg gaaagatcaa ctttgatcaa
4451 tttacttctg ttacacaaat ttgaacacaa gattaacact gaaggaatca
4501 ttgttgtgca cggaattgct ggaactggga aaaccacatt gcttaggact
4551 ttattttccg cataccctag cttagttata ggttcaccta ggccttgtta
4601 cttagataaa gctaataaaa tttcacaagt ttgcctttct tgttttccaa
4651 ataccttgtg tgacattgtt gacgagtatc atctcttaga aagttttcct
4701 gaaccaaaac tagccatttt tggtgacccc tgtcagtgca cttacattga
4751 aaggttgaga acacccaact acacatcctt cagaacacac cgatttggca
4801 aatccactgc tgctctacta aaccagttat ttgatcttaa cattgagtca
4851 gtcaaagcac aagacgacac agtagaatac tttgatcctt tcgcagtgga
4901 cccctctgaa cacatctctg cttcagaaaa agaagttttg gaattcgtag
4951 gtgatcaagt tgagactaca agctctgaag aactagctgg tctcgagttt
5001 agtgaagtta ctttctactg taccacactt ggcggtgctg ttcaagaaaa
5051 tcctgccaaa accttcattt cactcactag acacacttca aagctcacaa
5101 ttggtgaact aaatgccagg tctgactcct agagctgatc ttactgacac
5151 gtataaaatc attgctatag cctttctact gtcagcttgc atttacttcc
5201 aaaacagtca ttatcaacca gttgcaggtg ataatttgca cagactaccc
5251 tttggtggtc agtatcaaga cggaactaag aagatttctt actttccgca
5301 gcaacaatcc tactttcact caggaaacaa gcttaatgtc ctcatactta
5351 tcttcattct tacactgggt attgtcctca ccaataaatt tagttttagc
5401 attagccgta atactcacca gcatcattgc tacaacacac attctgcaac
5451 ccaaacaggt caatcagtgc caggtcatca ttgacggtgc agccatagtt
5501 ataacaaatt gtccaaacac acccgaagtt cttaaagcaa tcaacttctc
5551 cccttggaac gggttaagtt ttcctcaatt gtgaaattat atttgttatc
5601 tagttaaatt caaacaattt aactcaacta tggaaaacca acctacagct
5651 tctaacccat cagatgcacc accaactgct gctcaagctg gtgcccagag
5701 cccagccgac ttctcaaatc ctaatacagc tccttcccta agtgatttga
5751 agaagatcaa atacgtgtca actgtcactt cagttgccac gcctgctgaa
5801 attgaggccc ttggcaagat ctttactgcc atgggtttag cagccaatga
5851 gaccggacct gccatgtggg acctcgctcg tgcttatgct gacgtgcaaa
5901 gttcaaaatc tgcacaactt ataggtgcca caccatccaa ccctgctttg
5951 tctagacgtg cacttgctgc acagtttgat cgtatcaata tcacacccag
6001 acaattctgc atgtattttg caaaaattgt ttggaacata ctgttagaca
6051 gcaatgtgcc acctgccaac tgggcaaaat tgggctatca ggaagatacc
6101 aagtttgctg ctcttgactt ctttgatgga gtcacaaatc cagctagtct
6151 acagcctgca gatggcctaa tcaggcagcc caatgaaaaa gagcttgccg
6201 ctcactcggt tgctaaatat ggtgcccttg cccgccagaa aatatccact
6251 ggcaactaca tcaccaccct tggtgaagtt acacgtggtc acatgggcgg
6301 cgccaacact atgtacgcaa ttgatgcacc tcctgaactt taaacactcg
6351 aaacttaacc agagtggggt tttctatagt ttattttccc ttagtatcta
6401 aatctactaa at