Sequence of DPV Banana streak IM virus
Banana streak Imove virus strain IRFA910, complete genome.
ACC No: HQ659760
Dated: 2011-04-06 | Length: 7768 | CRC: -637786930
ID HQ659760; SV 1; circular; genomic DNA; STD; VRL; 7768 BP.
XX
AC HQ659760;
XX
DT 24-JAN-2011 (Rel. 107, Created)
DT 06-APR-2011 (Rel. 108, Last updated, Version 2)
XX
DE Banana streak Imove virus strain IRFA910, complete genome.
XX
KW .
XX
OS Banana streak Imove virus
OC Viruses; Retro-transcribing viruses; Caulimoviridae; Badnavirus.
XX
RN [1]
RP 1-7768
RX PUBMED; 21347843.
RA Geering A.D., Parry J.N., Thomas J.E.;
RT "Complete genome sequence of a novel badnavirus, banana streak IM virus";
RL Arch. Virol. 156(4):733-737(2011).
XX
RN [2]
RP 1-7768
RA Geering A.D.W.;
RT ;
RL Submitted (29-NOV-2010) to the EMBL/GenBank/DDBJ databases.
RL Queensland Alliance for Agriculture and Food Innovation, The University of
RL Queensland, 41 Boggo Road, Dutton Park, Queensland 4102, Australia
XX
FH Key Location/Qualifiers
FH
FT source 1. .7768
FT /organism="Banana streak Imove virus"
FT /host="Musa AAB Group cv. IRFA 910"
FT /strain="IRFA910"
FT /mol_type="genomic DNA"
FT /country="Australia"
FT /collection_date="Dec-1999"
FT /PCR_primers="fwd_name: IM-F1, fwd_seq:
FT tgccaacgaatactacatcaac, rev_name: IM-R1, rev_seq:
FT cacccagacttttctttctagc"
FT /db_xref="taxon:328675"
FT CDS 668. .1198
FT /codon_start=1
FT /product="unknown"
FT /note="ORF1"
FT /protein_id="ADV58680.1"
FT /translation="MDSYWDQEFEKYKNSHAKSISDLAYLNLETADKVSNKDLAFNLHI
FT NTYRSDLGFKVAIHSLSKNRELLIQNRKLLEEQELQLQEVHKLSKVIRSQRSDLKDILK
FT RQDVLTKELQALREDYLRRKPLSKEDVEELVVRISEQPKFIEKQTEALTEELTKEVQAL
FT KVIIHNFEQRLLG"
FT CDS 1195. .1587
FT /codon_start=1
FT /product="virion-associated protein"
FT /note="minor capsid protein; ORF2"
FT /protein_id="ADV58681.1"
FT /translation="MSLAGSKATAIYQEALSSTSAGWEDSGVGFTDKGTISTATLSRQL
FT NSLLFLVIKQNQLITTLSEELTQVHNKVKIIEGKGPSKLTPSSEIETINAKLKAIQEIQ
FT KSQPKKETSSGSIKVFEDPYKILRRL"
FT CDS 1590. .7202
FT /codon_start=1
FT /product="polyprotein"
FT /note="contains movement protein, coat protein and
FT polymerase protein; ORF3"
FT /protein_id="ADV58682.1"
FT /translation="MASRPRVLGSTTRTMVAEPGTPLVDDQIRDYRNAARAAYEAQRVA
FT RQTGNIIGRIVGRQPREHTLAMIVDPNSELERSLAHRARTIPAEVLYMTQRGEPTNRVY
FT RNRTEERMLVTQGQQDRSFILQESYEALLEAGFEYIHLGVLQVRIQIMHRSYAGTMALV
FT VFRDTRWTQEDAEDRSIIAAMEADLSQGHQLIYVIPDIMMTIRDFYQHIQISILTKGYN
FT GFQGESNLLVTRSCRCRLSNVPNVGFQYNIQNVVEFLKSKGVKALNATKISTKKFQGGE
FT WNIKPSEVVVPMQPTRMITRVNYDSSRSIRFGDYEASTSSAPPTYSTNDDEDEVLGEIH
FT QVNMITFLEDDDEFDYPQLAALEQIFAPESGVGEEDDTIIEFLDNLRLSDEEEEYNGDN
FT ETETSTPRSKYNIFTFEDDYPQLQKLDNLVLSTNESAISSYNPGDIDMEGVGPGYAPAT
FT GGTSYTGAGTSDFPYPRRPRKWENSSEWFNLPMANARQASVFIMPQDFDTKVFERWESS
FT VLLHMTDKIFDDPQDKLTYIENLLGESEKKMFITWRMKFTTEYEEMRANALGSNGTQSI
FT LNQIRMIFFLENPQVGTTNSQDAAYKTLKQLVCTEMSGPAIYRYLNDYFHLSAKSGRAW
FT ASEELSKEFFTKLPKGLGDRVEKSFKEKYPNNTIGVAARITFTRAYMKEICQEAVFQSQ
FT LKRLDFCKGTPVHGLYGKDKSYGRRYGVRKSTSYKGKPHKSHVRIDKKKHLTMKRKDCK
FT CFACGDIGHFASECPNPKKLMHRVQILQSLELEDGIDVISVGFDESDVSDIYSVSEGED
FT NYQFKHEDFGVVDHDVFIMTIEERNHLVPTTSEWRAAMKVTKEEYLCLHQWEFSSERAG
FT YCRACKHQALKGSRADCSTCKITICSLCKPHYYKDAAPIPVQKKVVKDDWMNMAKRFMD
FT SWKKAEDEKMELKEELNDIKEQIKFSKGKEKEVCTEEIPQIYTQKLELLENENSLLKDL
FT EEERKIQDIQVFKEIQAMRKEIESLKAAKEEENKAHEEEKKALKEEILALKKSITEIQK
FT PVELVNNVEEHLVLTGKQRNNLLNIKITIEIKEKKITMNAILDTGAAICVCDGQIVDNY
FT FRRPSMMNAFIKGVNGITNVQEILEEGRIWIGNQWFRIPRTYVMPQLSEGLHFIIGMNF
FT IRAMEGGIRIEQGIVTFYKMITQAQAPPITHDISYIEELELELPLYYDICAANPIGGMF
FT NSDLISPAEIQKLKDLGYIGEEPLKHWAKNQVRCRIEVKNPDLIIEDRPLKHVTPAMKE
FT SMKRHVDKLLELKVIRPSESKHRTTAIIVQSGTEIDPLTGKEKRGKERLVFNYKRLNDN
FT TEKDQYSLPGINTIISRIGNSKIYSKFDLKSGFHQVAMDPESIPWTAFWAIDGLYEWLV
FT MPFGLKNAPAIFQRKMDNCFRGTEEFIAVYIDDILIFSDNISDHRKHLKKFLEICKANG
FT LVLSPTKMKIGTPEIDFLGATIGNSKIKLQPHIIKKVIETRDEELKEVKGLRKWLGVLN
FT YARAYIPNLGKTLGPLYSKTSGNGERRMNSQDWKIVQNIKTQVQRLPDLEIPPTSAIMI
FT LETDGCMEGWGGICKWKAKPSDTRLNEKICAYASGSYNPIKSTIDAEVHAVINSLEKFK
FT IYYLDKKELIIRTDSQAIVAFYKKQADHKPSRTRWLMLIDYITGLGINVKFEHIDGKEN
FT VLADTLSRLVQVLVTKIHHPAEEQLVDAVLEVLKNPKEVAIKKVNHFILLTERWIAGFK
FT DEHPVNVLTLDEETRLRCSCQDPITKQGMFAALLQSHTATNPGRWFYKCERNRCHLWIW
FT KDLLDQYANEYYINMGLNSLLLNMDWPDEESDPLDPPSPARTEDIFDLANVSNDD"
XX
SQ Sequence 7768 BP; 2640 A; 1618 C; 1695 G; 1815 T; 0 other;
hq659760 Length: 7768 06-APR-2011 Type: N Check: 5715 ..
1 tggtatcaga gctaagtttt ctgtaagttt ttatggcttt tatggggtaa
51 ttcccttaga taggagccta agggctctgc tatgcttcat ttttagaaaa
101 tagctgtgta agtagacttg cataatgatt ctagaaagac taagaagagt
151 attctatgtt atgatactac ttgtgaaagg aaaaaggatt tcttgcgttt
201 ccaagttcta ctgaaataat gtccatctga gaaatgccta atatatagtg
251 aaagggagaa aaatgacttg agttgggagt gttagtttat cggacttgga
301 gcaaaagaac cagaacctta cctggcatgt aagacccaag gggcagaagc
351 tggagaaccc tggtgtgagt ttcttattcg gtattattaa aactctagta
401 tcctcaaaac ttcgtgaagt attccttgaa actataatat tagcaatttg
451 atggtgttca ctagatcaca aaaaaaattt gagttgtgca agaatgaaag
501 attccgatca catgatagtt gactaaactg gaagaccctt ttaagtctga
551 aagaaaaaca gatgcatgag ctacctctag aactggctac aatctattat
601 gagcatggca tcccaaagga ctactcctat ctgtctcaag aatttggttt
651 aaaaaccttt gttaactctg gattcctatt gggatcagga atttgaaaaa
701 tataaaaatt cacacgcgaa gtctatatca gatcttgctt atcttaattt
751 agaaactgct gacaaggtct ctaataaaga ccttgctttt aatctacata
801 tcaataccta ccgcagtgac ctcggtttca aagttgctat acattcttta
851 tccaaaaatc gtgaactact aatccagaac aggaagcttc tggaagaaca
901 agagcttcaa cttcaagaag ttcacaagct ctccaaagtt atacgttcac
951 aacgctcgga tcttaaagac atccttaaaa ggcaggacgt tcttacgaag
1001 gagcttcagg ctcttcgtga ggattattta aggagaaaac ctctcagcaa
1051 ggaggacgtt gaggaactgg ttgttcgcat ctcagaacag ccaaagttta
1101 ttgaaaaaca aacagaggcc ctcactgagg aacttacaaa agaggtgcaa
1151 gctcttaagg ttatcattca taacttcgag caaaggctct tgggatgagc
1201 cttgcaggca gcaaggcaac tgctatttac caagaagcac tatcctccac
1251 ctcagcaggc tgggaagact ctggtgtcgg tttcactgat aaaggcacca
1301 taagcactgc aacgttatcc aggcagctaa attctctact attcctagtg
1351 atcaagcaga atcagctcat cactacgtta tctgaggagc tgacccaagt
1401 ccacaacaag gtcaagataa ttgaaggcaa aggaccatca aaactcacgc
1451 cttcaagtga aattgaaact atcaacgcca agctcaaagc tatccaagaa
1501 atccagaaga gtcagcccaa aaaggagact tcttcaggat ccatcaaagt
1551 ctttgaggac ccgtataaaa tccttagaag attgtaaaaa tggcgtcaag
1601 accaagagtt ctgggctcca caaccagaac tatggttgca gaaccaggga
1651 cccccctggt tgatgatcag atccgggatt accggaatgc tgcaagagcc
1701 gcctatgaag ctcagagggt tgccagacaa actggcaaca tcatcggaag
1751 aattgttgga cgacaaccaa gggagcatac ccttgcaatg atcgtagatc
1801 ccaacagtga gctggagcgc tcactggctc atcgggcaag aaccataccg
1851 gctgaagtcc tttacatgac ccagcgcggt gagccaacaa accgggtcta
1901 cagaaatcgt acggaagaaa ggatgttagt cacacaagga cagcaagaca
1951 ggtcctttat tcttcaagaa tcctatgagg cgttactgga agcaggattt
2001 gagtacatcc acctcggagt actacaagtc cgtatccaaa tcatgcacag
2051 atcctacgca ggaacaatgg ccctggtagt ctttagggat accaggtgga
2101 cgcaagaaga tgctgaagat agatccatta ttgccgccat ggaagctgat
2151 ctttctcaag gacatcagct tatatatgta atcccagaca tcatgatgac
2201 catccgggat ttctatcagc atatacaaat aagcatctta accaagggat
2251 acaatgggtt ccaaggagag tccaacctct tggtaaccag aagctgtcgc
2301 tgcagattaa gcaacgttcc caacgttggc ttccagtaca acatccaaaa
2351 tgtggtagaa ttcctaaaat caaagggtgt aaaagccctc aatgccacaa
2401 aaatcagcac caaaaaattc caaggaggcg aatggaacat caagccttca
2451 gaagtggttg tacctatgca accaacaagg atgatcacaa gagtcaacta
2501 tgactcctcc agaagcatcc gctttggaga ctatgaggca agcacatcat
2551 cagccccacc gacatactcc accaatgatg atgaagatga agtacttgga
2601 gaaattcacc aagtaaatat gattacattc ctcgaagatg atgatgaatt
2651 cgattatcct cagttagcag ctttagagca aatatttgct ccagaaagcg
2701 gggtgggaga ggaagacgac acaatcatcg aattcttaga caacttgaga
2751 ctctctgatg aggaagaaga gtacaatggg gacaatgaaa ccgaaaccag
2801 taccccaaga agtaagtaca acattttcac cttcgaagac gactatcctc
2851 aactccagaa acttgataat cttgttctct ccaccaatga gtctgcaatc
2901 agcagctaca accctggaga tattgatatg gaaggagtag gtccaggata
2951 tgcacctgcg acaggaggaa ccagctatac tggagctggg acatctgatt
3001 tcccataccc aagaaggcca aggaaatggg aaaatagttc ggaatggttc
3051 aatttaccta tggctaatgc aagacaagcc tccgtattta tcatgccaca
3101 agactttgac accaaagtat tcgagcgatg ggaaagttct gtcctcctac
3151 atatgacaga caaaatcttc gatgatcccc aagacaagct tacatacatt
3201 gagaatttac taggggaatc ggaaaagaag atgttcatca cttggaggat
3251 gaagttcact actgaatatg aagaaatgcg tgcaaacgca ttaggctcca
3301 acggaacgca aagtatcctg aaccagatca ggatgatatt ctttttggaa
3351 aatcctcaag tcggcaccac caatagccag gatgccgcgt acaagacatt
3401 aaagcagctg gtatgcacag aaatgtcggg accagcaata tacagatacc
3451 tcaatgacta cttccatcta tcagcaaaat ccggaagagc ttgggcaagt
3501 gaagaactct caaaagaatt ctttacgaaa ctcccaaagg gattgggaga
3551 cagagttgag aaaagcttta aagaaaaata cccaaacaat acaattgggg
3601 tagcagcaag aatcactttt accagagcct atatgaaaga gatatgccaa
3651 gaagcagtgt tccagagcca actcaagaga ttggatttct gcaagggaac
3701 accagtccat gggctatacg gcaaggataa atcctacgga agaagatatg
3751 gggtacgaaa gagcacctcg tacaaaggaa aaccccataa gtcacatgtg
3801 agaatcgaca aaaagaagca tctcacaatg aagagaaagg actgcaagtg
3851 ctttgcttgc ggtgatatcg gtcatttcgc atcagaatgc ccgaatccca
3901 agaagctgat gcacagagtt cagatcctac aatcacttga gctagaggac
3951 ggtattgatg tcatctcagt agggtttgat gaatctgacg tctcagacat
4001 atattcagta tctgaagggg aagataacta ccagttcaaa catgaagatt
4051 tcggagtagt tgaccatgac gtctttataa tgactattga ggaaagaaac
4101 cacctagtcc ctacaacatc agaatggcgt gcagccatga aagtcacaaa
4151 ggaagaatat ctatgcctac accaatggga gtttagctca gaaagggcag
4201 gatactgtag agcctgcaag caccaggcct tgaaaggtag cagggcagat
4251 tgttcaacct gcaagattac tatctgctca ttgtgcaagc cccactatta
4301 caaagatgca gcgcctattc cagtccaaaa gaaggtcgta aaagatgatt
4351 ggatgaacat ggcaaagaga ttcatggaca gctggaaaaa ggctgaagat
4401 gaaaaaatgg aactgaagga agaactcaat gacatcaagg agcaaatcaa
4451 gttctccaaa ggcaaagaaa aagaggtatg cactgaagaa atccctcaga
4501 tttatactca aaaattagaa ctccttgaga atgaaaatag cttgctcaaa
4551 gacctggagg aagaaagaaa gatacaggat atacaggttt tcaaagagat
4601 ccaagctatg aggaaagaga ttgagagcct taaggcagca aaggaagaag
4651 aaaataaggc tcatgaggag gaaaagaagg ctcttaagga agagatttta
4701 gccttaaaga aaagcatcac tgaaattcag aagccagtgg aactagtgaa
4751 caacgtggag gaacatctgg ttctgacagg aaagcaaaga aataatctcc
4801 tcaacatcaa aattacaata gagataaaag aaaagaagat caccatgaat
4851 gcgatcttag acacaggagc tgccatatgt gtctgtgatg gtcagatagt
4901 tgacaactac ttcaggagac catcaatgat gaacgccttc ataaagggag
4951 taaatgggat caccaacgta caagaaatcc tagaggaagg aagaatctgg
5001 attggcaatc aatggttcag gatccccaga acatacgtta tgccacaact
5051 ctctgaagga cttcacttta tcatagggat gaacttcatt cgtgcaatgg
5101 aaggaggaat tcgtattgaa caagggatag taaccttcta caaaatgatt
5151 actcaagctc aggcaccccc tatcactcat gacatctctt acattgaaga
5201 attggaatta gagctgccac tctactatga catctgtgca gccaacccca
5251 taggagggat gtttaacagt gacttgatat caccagctga gatccagaag
5301 ctcaaagacc tcggatatat cggggaagaa cccctgaagc attgggctaa
5351 aaatcaagtc agatgtagaa tagaggtcaa aaaccctgac ctcatcatcg
5401 aggacagacc tctgaaacat gtcacccctg ctatgaagga atcaatgaag
5451 aggcacgtgg acaaactact cgagctgaaa gtaattcgac cctcagaaag
5501 taaacataga accactgcaa tcattgttca gtcgggtacg gagatagacc
5551 ctcttacagg aaaagagaaa agagggaagg agaggctggt attcaactac
5601 aagcgcctca atgataacac ggagaaagac caatactcat taccaggtat
5651 caacaccatc attagtagga ttggcaattc taaaatctat agcaaatttg
5701 atcttaaatc aggatttcac caagtcgcca tggaccctga aagtatacct
5751 tggacggcgt tctgggctat agacggactg tacgagtggc ttgttatgcc
5801 atttggttta aagaatgcac ctgccatctt ccagagaaag atggataatt
5851 gcttcagagg aaccgaggaa ttcattgcag tctacataga cgatatactc
5901 attttttctg ataacatttc tgatcatagg aagcatctta agaagttcct
5951 ggaaatttgc aaagcaaatg ggcttgttct cagcccaaca aaaatgaaga
6001 ttggcacacc ggaaattgac ttccttggag caaccattgg taactccaaa
6051 atcaaattac agccccacat catcaagaag gtcattgaaa caagagatga
6101 ggagctgaaa gaagttaaag gattaaggaa atggttggga gtccttaatt
6151 atgccagggc atacatccct aacctcggga aaacattggg accgctctat
6201 tcaaaaactt ctggcaacgg agagagaaga atgaatagtc aagattggaa
6251 gattgtacaa aacatcaaaa ctcaggtaca aagacttccc gatctagaaa
6301 tccctcccac tagtgcaata atgatacttg aaacagacgg ttgcatggaa
6351 gggtggggag gaatttgcaa atggaaggca aagccatcag atacaaggct
6401 gaatgaaaaa atctgtgcct acgccagcgg cagttacaat ccgatcaaga
6451 gtacaattga cgctgaagtc cacgccgtaa taaacagctt agaaaaattc
6501 aaaatatact acctggataa gaaagagctg atcatcagaa cggatagcca
6551 ggctattgtg gcattctaca agaagcaagc tgatcacaaa ccatcgagga
6601 caaggtggtt aatgcttata gattacatca caggccttgg tatcaacgta
6651 aagtttgagc acattgatgg aaaggaaaat gtgcttgctg acacattgtc
6701 aagattggta caagtattag ttaccaaaat tcaccatcca gctgaggaac
6751 aattggtgga tgcagttctc gaagtcctca aaaatccaaa ggaagtggcc
6801 atcaagaagg taaaccattt tatcttacta actgaaagat ggattgcagg
6851 attcaaggac gaacatcctg tgaacgttct gactcttgac gaagaaacaa
6901 ggctacgatg ctcatgccaa gatcccatca caaaacaagg gatgtttgct
6951 gcccttctgc aaagtcacac tgctacaaat ccaggacgat ggttctacaa
7001 atgtgagcga aacagatgtc acctctggat atggaaagac ctcttggacc
7051 agtatgccaa cgaatactac atcaacatgg gcctcaactc tttactgctc
7101 aacatggatt ggccagatga agagtcagat ccactggatc ctccaagccc
7151 agctagaacc gaagatattt ttgacttggc aaacgtaagc aatgacgact
7201 aaacaagatt cggtgcggaa atggtggacc cataatggta caaatctagg
7251 tgcaaatcag agtcatgcac atagctttat ttcctttaaa aatggattga
7301 gccccgggga gccgtccgat tgtttgataa aaatgtctgg gtgcaatgct
7351 ttgtcatgca catgactact taaaggttgt cggtcggtgc ctgcgtgcat
7401 ctcaagcaac cagtacgcta gaaagaaaag tctgggtgca atgcgctgtc
7451 atgcacatga ctactctagc tttattaaag tttgtcggtt gcattattgg
7501 tgcctgcgtg catcactact ctagctttat taaagtttgt cggttgcatt
7551 attggtgcct gcgtgcatcc gaagcaacct ttgcctttct ctatctataa
7601 gagaaggcct tgtaactcag ttgcaagcat gcaattccca cgcaagctta
7651 cttctgaatt ctccagaaat caaagtcaat agaatccttt tcttacagat
7701 gttcttgaaa tctctatgag caatcattag acgagtaaag aacaagatcc
7751 gcaaagcccc cccctata