Sequence of DPV Velvet tobacco mottle virus
Velvet tobacco mottle virus isolate 16 Strz RNA dependent RNA polymerase gene, complete cds.
ACC No: HQ680384
Dated: 2011-05-10 | Length: 1647 | CRC: -414700162
ID HQ680384; SV 1; linear; genomic RNA; STD; VRL; 1647 BP.
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AC HQ680384;
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DT 10-MAY-2011 (Rel. 108, Created)
DT 10-MAY-2011 (Rel. 108, Last updated, Version 1)
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DE Velvet tobacco mottle virus isolate 16 Strz RNA dependent RNA polymerase
DE gene, complete cds.
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KW .
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OS Velvet tobacco mottle virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Sobemovirus.
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RN [1]
RP 1-1647
RA Arthur K.R., Randles J.W.;
RT "Sequence variation in the VTMoV RdRp";
RL Unpublished.
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RN [2]
RP 1-1647
RA Arthur K.R., Randles J.W.;
RT ;
RL Submitted (02-DEC-2010) to the EMBL/GenBank/DDBJ databases.
RL School of Agriculture, Food and Wine, University of Adelaide, Waite Rd,
RL Adelaide, SA 5064, Australia
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FH Key Location/Qualifiers
FH
FT source 1. .1647
FT /organism="Velvet tobacco mottle virus"
FT /host="Nicotiana clevelandii"
FT /isolate="16 Strz"
FT /mol_type="genomic RNA"
FT /country="Australia"
FT /collected_by="John Randles"
FT /collection_date="02-Nov-1984"
FT /db_xref="taxon:12473"
FT CDS 1. .1647
FT /codon_start=1
FT /product="RNA dependent RNA polymerase"
FT /note="P2b; RdRp"
FT /protein_id="AEE36648.1"
FT /translation="MGFNYVGVSSCKFREGPKHAARGAISSAEQVFPELKQYGWPERGS
FT KAEFDSLLLQASRFRRTSCPEQTERKCEVLAEKYPKSRAHRCFRRENFCQRQLLREQIE
FT ATTTSPEINDKASPGSPWSRLEKTNGELISRFKDLLIEAVLRRVLLLASTPTSEILCMS
FT ASDLVRANLVDPVRLFVKQEPHTKKKLNERRFRLISSVSIVDQIIERLLFGPQNRLEIA
FT LWHQIPSKPGMGLSARTQADLLWNELFAKSEIAPAAEADISGFDWSVQEWELWADLSMR
FT ISLCEDMHDGLRRVMVNRYRCFMLSCFQLSNGELYEQVEPGLMKSGSYCTSSSNSRIRC
FT VMGHLIGAPWIIAMGDDSVEGYVRDAKSKYEELGHTCKEYELCDVDSDGALRSVNFCSH
FT LISRNKFWLTSWPKTLYRFLDSPSENFHDLERELGSCPKWVKIKDYCCQVGLVPDKTYW
FT EEDHPADYVEETHQEPGQADDTGNLAERADFRSVPTTETPKVDAARAEFYSYGPNGWSC
FT DIPEATHVNQWPLWGYSSSFGGGFGSPIRDY"
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SQ Sequence 1647 BP; 423 A; 373 C; 432 G; 419 T; 0 other;
hq680384 Length: 1647 10-MAY-2011 Type: N Check: 9759 ..
1 atgggattca actatgttgg agtctcgtct tgcaagttta gagagggccc
51 taagcacgct gctcgcggag caatcagttc tgctgagcaa gttttcccag
101 aactcaagca gtatggttgg ccagaaagag gctctaaagc cgaattcgat
151 tccctcctcc tccaagccag ccgtttccgg agaacctcct gtccagagca
201 aactgagcgt aaatgcgaag tcctcgctga gaagtacccc aaaagtagag
251 cccaccgttg cttcaggaga gaaaacttct gtcaacgcca gctcctcagg
301 gaacaaatcg aagcgacgac gacgtcgccg gaaatcaacg acaaagccag
351 ccccggctcc ccctggtcaa gacttgaaaa gaccaatggt gagctcatct
401 cccgtttcaa agacctctta attgaggcag tgttgaggcg agttttattg
451 cttgcctcca ctccaaccag tgagattttg tgcatgtctg cttcagatct
501 cgttagagct aacttagtgg atcctgtgcg attgttcgtc aagcaggaac
551 cccacacgaa gaagaagctg aatgagcgcc gctttaggct tatctcgtct
601 gtgtctatag ttgatcagat aatcgagaga ttattgtttg gtcctcagaa
651 caggcttgag attgccttat ggcatcagat accttccaaa cctggaatgg
701 gactgagcgc tcgtacgcaa gctgatttgt tgtggaatga gttattcgca
751 aagagcgaga tcgcccccgc ggctgaggct gacatttcag gatttgactg
801 gtctgtgcag gaatgggagt tatgggccga tctgagcatg aggatttctt
851 tgtgcgaaga tatgcatgat ggtctacgga gggtgatggt caacagatac
901 cgttgcttta tgctctcttg cttccaattg tcgaatgggg aattgtatga
951 acaagttgag cctggactta tgaagtctgg ttcctactgc acttcctctt
1001 ccaactccag aatcaggtgc gtaatgggcc atctaattgg agctccctgg
1051 ataatagcca tgggggatga ttctgttgag ggttatgtga gagacgcgaa
1101 aagtaagtat gaggaattag gacacacttg taaggaatac gagttgtgtg
1151 atgttgattc agatggcgcg ttgagatctg tgaacttttg ttcacatttg
1201 atttcccgca ataagttttg gctcacaagt tggcctaaaa ccttgtacag
1251 gttcctagac tctccctctg aaaattttca tgatcttgaa agggaacttg
1301 gctcatgtcc caagtgggtc aagataaagg attattgttg tcaggtagga
1351 ctggtccctg acaaaacata ttgggaagaa gatcaccctg ctgactatgt
1401 cgaagaaact caccaagaac caggtcaagc agatgataca ggcaaccttg
1451 ccgaaagagc agacttccgc tcggtcccga cgacggagac gccgaaggtc
1501 gacgcagcaa gggcagagtt ctacagttat ggccccaatg gctggagctg
1551 tgatataccg gaagcgaccc atgttaatca atggccgctc tggggttaca
1601 gttcgtcatt cggaggtggt tttggtagtc caatccggga ctactaa