Sequence of DPV Velvet tobacco mottle virus
Velvet tobacco mottle virus isolate 18 Strz RNA dependent RNA polymerase gene, complete cds.
ACC No: HQ680392
Dated: 2011-05-10 | Length: 1647 | CRC: 2087828121
ID HQ680392; SV 1; linear; genomic RNA; STD; VRL; 1647 BP.
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AC HQ680392;
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DT 10-MAY-2011 (Rel. 108, Created)
DT 10-MAY-2011 (Rel. 108, Last updated, Version 1)
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DE Velvet tobacco mottle virus isolate 18 Strz RNA dependent RNA polymerase
DE gene, complete cds.
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KW .
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OS Velvet tobacco mottle virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Sobemovirus.
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RN [1]
RP 1-1647
RA Arthur K.R., Randles J.W.;
RT "Sequence variation in the VTMoV RdRp";
RL Unpublished.
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RN [2]
RP 1-1647
RA Arthur K.R., Randles J.W.;
RT ;
RL Submitted (02-DEC-2010) to the EMBL/GenBank/DDBJ databases.
RL School of Agriculture, Food and Wine, University of Adelaide, Waite Rd,
RL Adelaide, SA 5064, Australia
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FH Key Location/Qualifiers
FH
FT source 1. .1647
FT /organism="Velvet tobacco mottle virus"
FT /host="Nicotiana clevelandii"
FT /isolate="18 Strz"
FT /mol_type="genomic RNA"
FT /country="Australia"
FT /collected_by="John Randles"
FT /collection_date="02-Nov-1984"
FT /db_xref="taxon:12473"
FT CDS 1. .1647
FT /codon_start=1
FT /product="RNA dependent RNA polymerase"
FT /note="P2b; RdRp"
FT /protein_id="AEE36656.1"
FT /translation="MGFNYVGVSSCKFREGSKHAARGAISSAEQVFPELKQYGWPERGS
FT KAEFDSLLLQASRFRRTSCPEQTERKCEVLAEKYPKSRAHRCFRRENFCQRQLLREQIE
FT ATTTSPEIDDKASPGSPWSRLEKTNGELISRFKDLLIEAVLRRVLLLASTPTSEILCMS
FT ASDLVRANLVDPVRLFVKQEPHTKKKLNERRFRLISSVSIVDQIIERLLFGPQNRLEIA
FT LWHQIPSKPGMGLSARTQADLLWNELFAKSEIAPAAEADISGFDWSVQEWELWADLSMR
FT ISLCEDMHDGLRRLMVNRYRCFMLSCFQLSNGELYEQVEPGLMKSGSYCTSSSNSRIRC
FT LMGYLIGAPWIIAMGDDSVEGYVRDAKGKYEELGHTCKEYELCDVNSDGALRSVNFCSH
FT LISRNKFWLTSWPKTLYRFLDSPSENFHDLERELGSCPKWAKIKDYCCQVGLVPDKTYW
FT EEDHPADYVEETHQEPGQADDTGNLAERADFCSVPTTETPKVDAARAEFYSYGPNGWSC
FT DIPEATHVNQWPLWGYSSSFGGGFGSPIRDY"
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SQ Sequence 1647 BP; 423 A; 373 C; 431 G; 420 T; 0 other;
hq680392 Length: 1647 10-MAY-2011 Type: N Check: 9344 ..
1 atgggattca actatgttgg agtctcgtct tgcaagttta gagagggctc
51 taagcacgct gctcgcggag caatcagttc tgctgagcaa gttttcccag
101 aactcaaaca gtatggttgg ccagaaagag gctctaaagc cgagttcgat
151 tccctcctcc tccaagccag ccgtttccgg agaacctcct gtccagagca
201 aaccgagcgt aaatgcgaag tcctcgctga gaagtacccc aaaagtagag
251 cccaccgttg cttcaggaga gaaaacttct gtcaacgcca gctcctcagg
301 gaacaaatcg aagcgacgac gacgtcgccg gaaatcgacg acaaagccag
351 ccccggctcc ccctggtcaa gacttgaaaa gaccaatggt gagctcatct
401 cccgtttcaa agacctctta attgaggcag tgttgaggcg agttttattg
451 cttgcctcca ctccaaccag tgagatttta tgcatgtctg cttcagatct
501 cgttagagct aacttagtgg atcctgtgcg attgttcgtc aagcaggaac
551 cccatacgaa gaagaagctg aatgagcgtc gctttaggct tatttcgtct
601 gtgtctatag ttgatcagat aatcgagaga ttattgtttg gtcctcagaa
651 caggcttgag atagccttat ggcatcagat accttccaaa cctggaatgg
701 gactgagcgc tcgtacgcaa gctgatttgt tgtggaatga gttattcgca
751 aagagcgaga ttgcccctgc ggccgaggct gacatttcag gatttgactg
801 gtctgtgcag gaatgggagt tatgggccga tctgagcatg aggatttctt
851 tgtgcgaaga tatgcatgat ggtctacgga ggttgatggt taacagatac
901 cgctgcttta tgctctcttg cttccaattg tcgaatgggg aattgtatga
951 acaagttgag cctggactca tgaagtctgg ttcttactgc acttcctctt
1001 ccaactccag aatcaggtgc ctaatgggtt atctaattgg agccccctgg
1051 ataatagcca tgggggatga ttctgttgag ggttatgtga gagacgcgaa
1101 aggcaagtat gaggaattag gacacacttg taaggaatac gagttgtgtg
1151 atgttaattc agacggcgcg ttgagatctg tgaacttttg ttcacatttg
1201 atttcccgca acaagttttg gctcacaagc tggcctaaaa ccttgtacag
1251 gttcctagac tctccctctg aaaattttca tgatcttgaa agggaacttg
1301 gctcatgtcc caagtgggcc aagataaagg attattgttg tcaggtagga
1351 ctggtccctg acaaaacgta ttgggaagaa gatcaccctg ctgactatgt
1401 cgaagaaact caccaagaac caggtcaagc agatgataca ggcaaccttg
1451 ccgaaagagc agacttctgc tcggtcccga cgacggagac gccgaaggtc
1501 gacgcagcaa gggcagagtt ctacagttat ggccccaatg gctggagctg
1551 tgatataccg gaagcgaccc atgttaatca atggccgctc tggggttaca
1601 gttcgtcatt cggaggtggt tttggtagtc caatccggga ctactaa