Sequence of DPV Velvet tobacco mottle virus
Velvet tobacco mottle virus isolate 15 Strz RNA dependent RNA polymerase gene, complete cds.
ACC No: HQ680396
Dated: 2011-05-10 | Length: 1647 | CRC: 2112504165
ID HQ680396; SV 1; linear; genomic RNA; STD; VRL; 1647 BP.
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AC HQ680396;
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DT 10-MAY-2011 (Rel. 108, Created)
DT 10-MAY-2011 (Rel. 108, Last updated, Version 1)
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DE Velvet tobacco mottle virus isolate 15 Strz RNA dependent RNA polymerase
DE gene, complete cds.
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KW .
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OS Velvet tobacco mottle virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Sobemovirus.
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RN [1]
RP 1-1647
RA Arthur K.R., Randles J.W.;
RT "Sequence variation in the VTMoV RdRp";
RL Unpublished.
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RN [2]
RP 1-1647
RA Arthur K.R., Randles J.W.;
RT ;
RL Submitted (02-DEC-2010) to the EMBL/GenBank/DDBJ databases.
RL School of Agriculture, Food and Wine, University of Adelaide, Waite Rd,
RL Adelaide, SA 5064, Australia
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FH Key Location/Qualifiers
FH
FT source 1. .1647
FT /organism="Velvet tobacco mottle virus"
FT /host="Nicotiana clevelandii"
FT /isolate="15 Strz"
FT /mol_type="genomic RNA"
FT /country="Australia"
FT /collected_by="John Randles"
FT /collection_date="02-Nov-1984"
FT /db_xref="taxon:12473"
FT CDS 1. .1647
FT /codon_start=1
FT /product="RNA dependent RNA polymerase"
FT /note="P2b; RdRp"
FT /protein_id="AEE36660.1"
FT /translation="MGFNYVGVSSCKFREGSKHTTRGAIGSAEQVFPELKQYGWPERGS
FT KAEFDSLLLQASRFRRTSCPEQTERKCEVLAEKYPKSRAHRCFRRENFCQRQLLREQIE
FT ATTTSPEINDKASPGSPWSRLEKTNGEFISRFKDLLIEAVLRRVLLLASTPTSEILCMS
FT ASDLVRASLVDPVRLFVKQEPHTKKKLNERRFRLISSVSIVDQIIERLLFGPQNRLEIA
FT LWHQIPSKPGMGLSARTQADLLWNELFAKSEIAPAAEADISGFDWSVQEWELWADLSMR
FT ISLCEDMHDGLRRLMVNRYRCFMLSCFQLSNGELYEQVEPGLMKSGSYCTSSSNSRIRC
FT LMGYLIGAPWIIAMGDDSVEGYVRDAKSKYEELGHTCKEYELCDVDSDGALRSVNFCSH
FT LISRNKFWLTSWPKTLYRFLDSPSENFHDLERELGSCPKWAKIKDYCCQVGLVPDKTYW
FT EEDHPADYVEETHQEPGQADDTGNLAERADFCSVPTTETPKVDAARAEFYSYGPNGWSC
FT DIPEATHVNQWPLWGYSSSFRGGFSSPIRDY"
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SQ Sequence 1647 BP; 426 A; 370 C; 428 G; 423 T; 0 other;
hq680396 Length: 1647 10-MAY-2011 Type: N Check: 1792 ..
1 atgggattca actatgttgg agtctcgtct tgcaagttta gagagggctc
51 taagcacact actcgcggag caatcggttc tgctgagcaa gttttcccag
101 aactcaagca gtatggttgg ccagaaagag gctctaaagc cgaattcgat
151 tccctcctcc tccaagccag ccgctttcgg agaacctcct gtccagagca
201 aaccgagcgt aaatgcgaag tcctcgctga gaagtacccc aaaagtagag
251 cccaccgttg tttcaggaga gaaaacttct gtcagcgcca gctcctcagg
301 gaacaaatcg aagcgacgac gacgtcgccg gaaatcaacg acaaagccag
351 ccccggctcc ccctggtcaa gacttgaaaa gaccaacggc gagttcatct
401 cccgtttcaa agacctctta attgaggcag tgttgaggcg agttttattg
451 cttgcctcca ctccaaccag tgagattctg tgtatgtctg cttcagatct
501 cgttagagct agcttagtgg atcccgtgcg attgtttgtc aagcaggaac
551 cccacacgaa gaagaagctg aatgagcgcc gctttaggct tatttcgtct
601 gtgtctatag ttgatcagat aatcgagaga ttattgtttg gtcctcagaa
651 caggcttgag attgccttat ggcatcagat accttccaaa ccaggaatgg
701 gactgagcgc tcgtacgcaa gctgatttgt tgtggaatga gttattcgca
751 aagagcgaga tcgcccctgc ggccgaagct gatatttcag gatttgactg
801 gtctgtgcag gaatgggagt tatgggccga tctaagcatg aggatctcct
851 tgtgcgaaga tatgcatgat ggtctacgga ggttgatggt taatagatac
901 cgttgcttta tgctctcttg cttccaattg tcgaatgggg aattgtatga
951 acaagttgag cctggactta tgaagtctgg ttcctactgc acttcctctt
1001 ccaactccag aatcaggtgc ctaatgggtt atctaattgg agctccctgg
1051 ataatagcca tgggggatga ttctgttgag ggttatgtga gagacgcgaa
1101 aagtaagtat gaggaattag gacacacttg taaggaatac gagttgtgtg
1151 atgttgattc agatggcgcg ttgagatctg tgaacttttg ttcacatttg
1201 atttcccgca ataagttttg gctcacgagt tggcctaaaa ccttgtacag
1251 gttcctagac tctccctctg aaaattttca tgatcttgaa agggaacttg
1301 gctcatgtcc caagtgggcc aagataaagg attattgttg tcaggtagga
1351 ctggtccctg acaaaacata ttgggaagaa gatcaccctg ctgactatgt
1401 cgaagaaact caccaagaac caggtcaagc agatgataca ggcaaccttg
1451 ccgaaagagc agacttctgc tcggtcccga cgacggagac gccgaaggtc
1501 gacgcagcaa gggcagagtt ctacagttat ggccccaatg gctggagctg
1551 tgatataccg gaagcgaccc atgttaatca atggccgctc tggggttaca
1601 gttcgtcatt cagaggtggt tttagtagtc caatccggga ctactaa