Sequence of DPV Cymbidium mosaic virus
Cymbidium mosaic virus isolate HNXL, complete genome.
ACC No: HQ681906
Dated: 2011-06-08 | Length: 6224 | CRC: 2053268956
ID HQ681906; SV 1; linear; genomic RNA; STD; VRL; 6224 BP.
XX
AC HQ681906;
XX
DT 08-JUN-2011 (Rel. 109, Created)
DT 08-JUN-2011 (Rel. 109, Last updated, Version 1)
XX
DE Cymbidium mosaic virus isolate HNXL, complete genome.
XX
KW .
XX
OS Cymbidium mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales;
OC Alphaflexiviridae; Potexvirus.
XX
RN [1]
RC Publication Status: Available-Online prior to print
RP 1-6224
RX PUBMED; 21442302.
RA He Z., Jiang D., Liu A., Sang L., Li W., Li S.;
RT "The complete sequence of Cymbidium mosaic virus from Vanilla fragrans in
RT Hainan, China";
RL Virus Genes 0:0-0(2011).
XX
RN [2]
RP 1-6224
RA He Z., Li S.F., Jiang D.M.;
RT ;
RL Submitted (23-NOV-2010) to the INSDC.
RL State Key Laboratory of Biology of Plant Diseases and Insect Pests,
RL Institute of Plant Protection, Chinese Academy of Agricultural Sciences,
RL West 2 Yuanmingyuan Road, Haidian, Beijing 100193, China
XX
FH Key Location/Qualifiers
FH
FT source 1. .6224
FT /organism="Cymbidium mosaic virus"
FT /host="Vanilla planifolia"
FT /isolate="HNXL"
FT /mol_type="genomic RNA"
FT /country="China:Xinglong Tropical Botanical Garden, Haikou,
FT Hainan province"
FT /collection_date="Aug-2009"
FT /db_xref="taxon:12178"
FT 5'UTR 1. .72
FT gene 73. .4323
FT /gene="RdRp"
FT /locus_tag="CymMVgp1"
FT CDS 73. .4323
FT /codon_start=1
FT /gene="RdRp"
FT /locus_tag="CymMVgp1"
FT /product="RNA dependent RNA polymerase"
FT /protein_id="AEH03003.1"
FT /translation="MARVRDTLDRLRDPSVLTSINEEAHRHIRPVLASALVNCPYALTE
FT EEADCLENLGVTVNPFAIQTHTHAAAKTVENRMLEIVGTHLPKEPSTFIFLKRSKLRYL
FT RRAANNKDIFQNQHIEPKDLLRYDDESCEVMPECSTSTAYISDALHFLSYAQLGKIFQD
FT SPKLKILLATLVLPVEALHRHPSLFPAIYTLNYHKDGFEYIPGNHAGGAYFHEYSTLQW
FT LTLGKLIINDPLKVKKPLTLTVQLIESLGANHLLLITRGDLRTPKLRTFAKDTHALLPQ
FT IFHPKGMNANKPLAKRRAMQLWLYAKSVKEVSERDLYAKVRQLIPTSELDLFDPVEVTH
FT LVNYLLFISHLSSVSSYDDILSSNIFQHFTIPIENKIRELVQLFTGADQFNQLLKALDW
FT QTFSYSMPVETIHTRAANYQVANTLRMCRDLPCDEYDRVKDVLRQLPDGVTLFEENDKQ
FT DPSSSETEDSEDDTDSVDFNLPPTHDLPPNFDPLDKGKSIIVDTDSPSTSTAPAITFTA
FT GINSSASTNILFGSFTPEADAPPLPPMEKLPWDLWIPLLEQHGFKGKSKLYKPTGELIC
FT PITEIKTVPHCPFPDKVPDGCVLALKSIKRFATKMTMLSSRASAYTSDIKNCRTGKLLP
FT AMNMPWKASLAYVTQHGDREIPGVVIHGAGGCGKSYAIQKWLRSCSDPCAATVVCPTLE
FT LRNDWLNKIGSYEQTNIKTFEKALIQPVNNVVIFDDYTKLPPGYIETMVYHHHNLDLII
FT LTGDPMQSAYHETNRDAYISLIPDASAIFSEYCEFNINATHRNVAELACLLGVYSERQG
FT KLTVSFSAAPLSKGKVPILVPSRMKQEAFADVGNRCMTYAGCQGLTAPKIQILIDNHTT
FT FCSEQTLYTCLSRAVDQIHFINTGPNSQAFWTKLESTPYLKAFLDNYREEQTERLTSTA
FT PEPEVREPAAPKTHIPVENTSGLRIAALDLPEKHSREIFNKAHGFSNAIQGDGVAPMFQ
FT HQQAKDETLFKATIDARLSITHPDENKREFAMKKDTGDVLFVNYKAIMNLPHEPVPFEP
FT RLWNIRKAEVQNTYLAKPIANLINGTLRQSPDFPANKIALFLKSQWVKKIEKIGAIPVK
FT PGQTIASFMQETVMLYGTMARYLRKMRQRYQPAHIFINCEKTPEDFNKFILEHWSHKQV
FT AHTNDFTAFDQSQDAAMLQFEVIKARYFNIPEDVIEGYIQIKLTAEIFLGTLSIMRLSG
FT EGPTFDANTECSIAYNATRYHINEDVTQVYAGDDMAMDHVCPEKSFKALEKKLKLTSKP
FT LYPKQKPGDWADFCGWTITPYGIIKNPKKLDACLQLHTQLGDAHEVARSYALDAKYAYD
FT LGDRIHEVLNVDEMTSHFNVIRQLHKLHQQDVLVPPEHTVATAVKSQPDVEDLWLRALS
FT FPDWTDRAQLLKRV"
FT gene 4330. .5031
FT /gene="TGBp1"
FT /locus_tag="CymMVgp2"
FT CDS 4330. .5031
FT /codon_start=1
FT /gene="TGBp1"
FT /locus_tag="CymMVgp2"
FT /product="triple gene block 1"
FT /note="TGBP1"
FT /protein_id="AEH03007.1"
FT /translation="MELAYLVRLLEHNKFERTNLPLSSPLVVHGIAGSGKSTILTTFHH
FT HYPAHPIFSHSPTLLDPSNRIYQQCITTDSVPDGAIVDEYNYKALDYSRCLALFGDPLQ
FT LPHSLQPHYYSSRTYRYGPKLTSLLNDLFHLSITSLAPVDSLDYADPFVVDPSGFTIAD
FT EEVYNFVSQQVPGTLLPLDTVGLEYSSVSFYCSDLRRCVVLRPLSTFIALTRAKGNLTI
FT FDFNARFSSTT"
FT gene 5006. .5344
FT /gene="TGBp2"
FT /locus_tag="CymMVgp3"
FT CDS 5006. .5344
FT /codon_start=1
FT /gene="TGBp2"
FT /locus_tag="CymMVgp3"
FT /product="triple gene block 2"
FT /note="TGBP2"
FT /protein_id="AEH03004.1"
FT /translation="MPGLVPPPDHSKSLFVLAIGITVVSALFVLKSHTFPIAGDNIHRF
FT PSGGQYKDGTKQINYCPPTHARYPKYPDYKWLAATAAIVIPLCLYISYHPGNNIRRICP
FT CCNTYHHS"
FT gene 5199. .5474
FT /gene="TGBp3"
FT /locus_tag="CymMVgp4"
FT CDS 5199. .5474
FT /codon_start=1
FT /gene="TGBp3"
FT /locus_tag="CymMVgp4"
FT /product="triple gene block 3"
FT /note="TGBP3"
FT /protein_id="AEH03005.1"
FT /translation="MLGTRNTLTTSGLPLPPPLSSLSAYIFPTILAIIFAVFALVAIHI
FT TTPEPFCTIHIDGASITITNCPDPAAILNKVAIGPWRGLSYHNNLK"
FT gene 5477. .6148
FT /gene="cp"
FT /locus_tag="CymMVgp5"
FT CDS 5477. .6148
FT /codon_start=1
FT /gene="cp"
FT /locus_tag="CymMVgp5"
FT /product="coat protein"
FT /note="CP"
FT /protein_id="AEH03006.1"
FT /translation="MGEPTPTPAATYSAADPTSAPKLADLAAIKYSPVTSSIATPEEIK
FT AITQLWVNNLGLPADTVGTAAIDLARAYADVGASKSATLLGFCPTKPDVRRAALAAQIF
FT VANVTPRQFCAYYAKVVWNLMLATNDPPANWAKAGFQEDTRFAAFDFFDAVDSTAALEP
FT AEWQRRPTDRERAAHSVGKYGALARQRIQNGNLITNIAEVTKGHLGSTNTLYALPAPPT
FT E"
FT 3'UTR 6149. .6224
XX
SQ Sequence 6224 BP; 1655 A; 1788 C; 1216 G; 1565 T; 0 other;
hq681906 Length: 6224 08-JUN-2011 Type: N Check: 9005 ..
1 gaaaaccaaa cctcacgtct actcagccat tcgagcgaaa tagcagcccc
51 agcataggca atatcgcgct ccatggcccg agtacgtgac acccttgaca
101 ggctccgtga tccgtcggtc cttacctcaa ttaacgagga agcccaccga
151 catatccgcc ctgtccttgc ctcggcactc gtaaactgcc cttacgcatt
201 gaccgaggag gaggccgact gtctcgaaaa tcttggcgtg acagtcaatc
251 ccttcgccat ccaaacgcat acacatgctg cagccaaaac tgttgaaaat
301 cgcatgttgg aaattgttgg cacccacctt cctaaagaac cctccacctt
351 catattcctc aagcggagca agcttcgcta cctacgacgc gctgccaata
401 acaaagacat atttcaaaat caacacattg agcctaaaga cttattgcgt
451 tacgatgacg agtcttgtga agtaatgcca gaatgctcca caagcacagc
501 ctacatcagt gatgctctcc atttcttgag ctacgctcag cttgggaaaa
551 tattccagga ttctcccaag ctgaaaattc tgctggcaac cctggtcctc
601 cccgtggaag ccctccatag gcacccatct cttttccctg ccatctatac
651 tttaaactac cataaagatg gctttgaata tatacccggc aatcacgccg
701 gaggtgccta cttccacgag tactccactc tgcagtggtt gactctcggg
751 aagctaatta tcaacgatcc tttgaaagta aagaaacccc ttactcttac
801 tgtgcaacta atagagagtc taggggctaa ccatctttta cttatcaccc
851 gaggggatct tcgcacaccc aaactgcgga cattcgctaa agatacccat
901 gctctattgc cacaaatatt ccatcctaag ggtatgaatg cgaacaaacc
951 attagccaaa cgtagagcta tgcagttgtg gctctacgcc aaatctgtca
1001 aagaggtgag cgaacgggat ctttatgcta aagtgaggca attgatcccg
1051 acttctgagt tagacctttt tgaccccgtg gaggtgaccc acttggtcaa
1101 ttacttacta ttcatcagtc acctttcctc cgtatcttcg tatgacgaca
1151 tcttgtcgtc taatatattc caacatttca ccatcccaat cgagaataag
1201 atacgggaat tggtccagct attcactgga gcggaccaat ttaatcaact
1251 gctcaaagct ctcgactggc aaacattttc ttactctatg ccagtagaga
1301 ccatccatac acgtgcggcc aattatcaag tcgctaacac gcttcgcatg
1351 tgcagagacc taccatgcga tgaatatgat cgtgtaaagg atgtcctcag
1401 acagctccct gacggagtga cgttgtttga ggaaaacgat aagcaagatc
1451 cctcaagctc tgaaaccgag gactctgagg atgacactga ctccgtcgat
1501 ttcaacctcc cacccactca tgacttgccc ccaaattttg atcctctaga
1551 caagggcaag tccattatcg ttgacactga cagcccctca acttccacgg
1601 cacctgccat cacttttact gccggtatca actcctcagc ctccacaaat
1651 attttatttg gaagcttcac acctgaggct gatgcccccc cccttcctcc
1701 catggaaaag ttaccatggg atctttggat tcccctactg gaacaacatg
1751 gctttaaagg aaagagcaag ctgtacaagc ccacgggtga actaatctgc
1801 cccataactg aaatcaaaac agttccccac tgcccctttc ccgataaagt
1851 cccggatggc tgtgtgcttg cgctcaaatc tattaagcgt tttgccacaa
1901 aaatgaccat gctcagttct cgagcttccg cctacacctc cgatattaag
1951 aattgtagga ctgggaagct cctacccgcc atgaacatgc cctggaaagc
2001 ctctctcgcc tatgtcactc aacatggtga tagagaaatt cctggcgtcg
2051 tgatccatgg tgccggtggc tgtggcaaat cttatgccat tcaaaaatgg
2101 ttgagaagct gctctgatcc ttgtgcagct accgtggtat gcccaactct
2151 agaactacgt aatgactggc tcaataagat tggaagctat gaacaaacga
2201 atatcaaaac ttttgagaaa gctttaatcc agccagtcaa caacgtagtt
2251 atctttgatg actacaccaa gctaccccct gggtacattg agaccatggt
2301 gtaccatcac cacaacctcg acctaatcat attaactggg gatcctatgc
2351 agagtgccta tcatgaaact aatagggatg cctatatctc tttaatacct
2401 gatgcctctg ccatttttag tgagtactgc gagttcaaca ttaacgccac
2451 ccaccgtaat gtggctgaac tcgcttgcct ccttggtgtc tactccgaac
2501 gccaaggcaa actcactgtt tcctttagcg cagccccact ttctaaaggt
2551 aaagtaccca ttctggtacc ctccagaatg aagcaagagg ctttcgctga
2601 tgtcggcaac cgttgcatga cttatgccgg ttgccagggt ctcactgccc
2651 ctaaaatcca aattttgata gacaaccaca ctacgttctg ctctgaacaa
2701 accttatata cttgtctatc acgagctgtg gaccaaatcc actttattaa
2751 cactggtccc aactcgcagg ctttctggac taagttggaa tcaacgccgt
2801 acctaaaagc tttcctcgat aattaccgtg aggaacaaac tgaacggcta
2851 acgtctactg ccccagagcc tgaagtccgt gagccagcag ccccaaaaac
2901 gcatatcccg gtcgaaaata catctggctt acgtattgct gcacttgacc
2951 tgccggaaaa gcactctcgc gagattttca acaaggcgca tggcttttcc
3001 aatgctattc agggagatgg cgtagctccc atgttccagc atcaacaggc
3051 aaaggacgaa acccttttca aggctaccat agacgctaga ctctctataa
3101 cacatcctga tgaaaataaa agagagtttg ccatgaagaa agacactggg
3151 gatgtccttt ttgtcaatta caaagctata atgaacctac ctcatgagcc
3201 tgttcctttt gaacctcgtc tctggaacat ccgcaaagct gaagtgcaga
3251 atacatacct agccaaaccc attgcaaatc ttatcaatgg taccttaagg
3301 caatcacctg attttccagc caataagata gcattattcc tgaaatcgca
3351 atgggtaaag aaaattgaga aaattggagc cataccagtt aaacctggac
3401 agactattgc atcatttatg caagagactg ttatgctgta cggcaccatg
3451 gcacgctacc tccgtaagat gcggcaaaga tatcaacccg cacacatatt
3501 tatcaattgt gaaaagactc cggaggactt caataaattt atacttgaac
3551 actggtcaca caagcaagtt gcccacacta acgattttac cgctttcgac
3601 cagtcacaag atgctgccat gctccaattt gaagttatca aggctaggta
3651 cttcaacatc cctgaggacg ttatagaagg atacattcaa attaagctca
3701 ctgctgaaat cttcctcggg acactttcca tcatgcgctt atctggtgaa
3751 gggccaacct tcgacgccaa tactgaatgc tctattgcct acaacgccac
3801 cagataccat attaatgaag acgtcaccca agtatacgcc ggtgacgaca
3851 tggctatgga ccatgtgtgc cctgagaaga gcttcaaagc tttggaaaag
3901 aaactgaaat tgacctcaaa acctctctat ccaaagcaaa aacctggaga
3951 ctgggccgat ttctgcggct ggactataac gccttatggc atcattaaga
4001 atcctaagaa acttgatgca tgcctacaat tgcacaccca actgggcgat
4051 gcccatgaag tcgctagatc atacgcactc gatgccaaat atgcttatga
4101 tctgggcgat cgcattcatg aggttctgaa tgttgatgaa atgaccagcc
4151 acttcaatgt tataagacag ttgcacaaac tgcatcaaca agatgtactg
4201 gtcccacccg agcataccgt agccacagcg gtaaagtctc aacctgatgt
4251 ggaggatctg tggctccgtg cgcttagctt ccctgactgg acggaccgcg
4301 cccaactttt aaaacgggtt taaattttga tggagctagc gtacttagtt
4351 agattactag aacacaataa attcgagcgc actaatctgc ccctttcctc
4401 acccttagtt gtacacggaa tcgctggcag tggaaagtcc accatcctca
4451 ctactttcca tcaccattac ccggctcacc ccatcttctc acacagtccc
4501 acattgcttg accctagcaa ccgcatatac caacagtgca tcactactga
4551 ttcggtgcca gacggtgcta tcgtagacga gtacaattat aaagcactcg
4601 actactctcg ctgtctagcc ctttttggtg atccactcca gcttccacat
4651 tcacttcaac cccactacta ctctagtcgc acttaccgct acggtcccaa
4701 gctcaccagt ctactcaacg acttattcca cctttccatc acttctcttg
4751 ctcccgtcga cagccttgat tacgctgatc cttttgttgt cgacccctca
4801 ggattcacca ttgctgacga ggaagtgtac aactttgtct ctcagcaggt
4851 tcccggcact ttactgccgc tcgatactgt aggtttagaa tattctagtg
4901 ttagttttta ctgcagtgat ctccgacgct gtgtcgtact aaggccactc
4951 agcacattca tcgctctcac ccgcgccaag ggcaacctca ccattttcga
5001 cttcaatgcc aggtttagtt ccaccacctg accactctaa atcactcttc
5051 gtccttgcta ttggtataac tgtggtctcc gcattatttg tgctaaaatc
5101 ccacactttt ccaattgcag gcgataatat tcaccgcttc ccctccggcg
5151 gccaatacaa agacggtact aagcaaataa actactgccc acctactcat
5201 gctaggtacc cgaaataccc tgactacaag tggcttgccg ctaccgccgc
5251 cattgtcatc cctctctgcc tatatatttc ctaccatcct ggcaataata
5301 ttcgccgtat ttgcccttgt tgcaatacat atcaccactc ctgagccctt
5351 ctgtaccata cacatagacg gggcgtctat tactatcact aactgccctg
5401 atcctgcagc tatattaaat aaagtagcca taggcccctg gcgagggtta
5451 agttaccaca ataatttgaa atgatcatgg gagagcccac tccaactcca
5501 gctgccactt actccgctgc cgaccccact tctgcaccca agttggctga
5551 cctggctgcc atcaagtact cacctgtcac ctcctccatt gccacccccg
5601 aagaaatcaa ggccataacc caattgtggg ttaacaacct tggcctcccc
5651 gccgacacag taggtactgc ggccattgac ctggctcgcg cctacgctga
5701 cgtcggggcg tccaagagtg ctaccctgct tggtttctgc cctacgaaac
5751 ctgatgtccg tcgcgccgct cttgccgcgc agatcttcgt ggccaacgtc
5801 accccccgcc agttttgcgc ttactacgca aaagtggtgt ggaacctgat
5851 gctggctact aacgatccgc ctgccaactg ggccaaggct ggtttccagg
5901 aggatacccg gtttgctgca tttgacttct tcgatgcagt cgattccact
5951 gccgcgttgg agcctgctga atggcagcgc cgccctaccg accgtgaacg
6001 tgctgcgcac tcagtcggga agtacggcgc ccttgcccgt cagcgtatcc
6051 aaaacggcaa cctcatcacc aacattgccg aggtcactaa gggccatctt
6101 ggctccacca acactctcta tgctctgcct gcacccccta ctgaataacg
6151 ccaaacttaa taaggcgtgt ggttttctaa agtttgtttc cactactggc
6201 ataatacgtt tagccagatc taat