Sequence of DPV Maize streak virus
Maize streak virus isolate MSV-A_ZA_Mal2_T4-2007, complete genome.
ACC No: HQ693423
Dated: 2011-09-04 | Length: 2690 | CRC: -625809345
ID HQ693423; SV 1; circular; genomic DNA; STD; VRL; 2690 BP.
XX
AC HQ693423;
XX
DT 05-AUG-2011 (Rel. 109, Created)
DT 04-SEP-2011 (Rel. 110, Last updated, Version 3)
XX
DE Maize streak virus isolate MSV-A_ZA_Mal2_T4-2007, complete genome.
XX
KW .
XX
OS Maize streak virus
OC Viruses; ssDNA viruses; Geminiviridae; Mastrevirus.
XX
RN [1]
RP 1-2690
RX DOI; 10.1128/JVI.00640-11.
RX PUBMED; 21715477.
RA Monjane A.L., Harkins G.W., Martin D.P., Lemey P., Lefeuvre P.,
RA Shepherd D.N., Oluwafemi S., Simuyandi M., Zinga I., Komba E.K.,
RA Lakoutene D.P., Mandakombo N., Mboukoulida J., Semballa S., Tagne A.,
RA Tiendrebeogo F., Erdmann J.B., van Antwerpen T., Owor B.E., Flett B.,
RA Ramusi M., Windram O.P., Syed R., Lett J.M., Briddon R.W., Markham P.G.,
RA Rybicki E.P., Varsani A.;
RT "Reconstructing the history of maize streak virus strain a dispersal to
RT reveal diversification hot spots and its origin in southern Africa";
RL J. Virol. 85(18):9623-9636(2011).
XX
RN [2]
RP 1-2690
RA Monjane A.L., Harkins G.W., Martin D.P., Lemey P., Lefeuvre P.,
RA Shepherd D.N., Oluwafemi S., Simuyandi M., Zinga I., Komba E.K.,
RA Kakouttene D.P., Mandakombo N., Mboukoulida J., Semballa S., Tagne A.,
RA Tiendrebeogo F., Erdmann J.B., van Antwerpen T., Owor B.E., Flett B.,
RA Ramusi M., Windram O.P., Syed R., Lett J.-M., Peterschmitt M.,
RA Briddon R.W., Markham P.G., Rybicki E.P., Varsani A.;
RT ;
RL Submitted (08-DEC-2010) to the INSDC.
RL Electron Microscope Unit, University of Cape Town, Private Bag, Rondebosch,
RL Cape Town, WP 7701, South Africa
XX
FH Key Location/Qualifiers
FH
FT source 1. .2690
FT /organism="Maize streak virus"
FT /host="sugarcane"
FT /isolate="MSV-A_ZA_Mal2_T4-2007"
FT /mol_type="genomic DNA"
FT /country="South Africa"
FT /lat_lon="25.51 S 31.5 E"
FT /collection_date="2007"
FT /db_xref="taxon:10821"
FT CDS 1. .306
FT /codon_start=1
FT /product="movement protein"
FT /protein_id="AEL32239.1"
FT /translation="MDPQNALYYQPRVPTAAPTSGGVPWSRVGEVAILSFVALICFYLL
FT YLWVLRDLILVLKARQGRSTEELIFGGQAVDRSNPIPNLPAPPSQGNPGPFVPGTG"
FT CDS 317. .1051
FT /codon_start=1
FT /product="coat protein"
FT /protein_id="AEL32240.1"
FT /translation="MSTSKRKRGDDANWSKRVPKKKPSSAGLKRAGSKADRPSLQIQTL
FT QHAGTTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAVDYHFVADAAACRYSNT
FT GTGVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMET
FT DGRIGSDIPPSNTSWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAP
FT GNGLTFTAHGQTRLYFKSVGNQ"
FT CDS complement(1561. .2379)
FT /codon_start=1
FT /product="RepA"
FT /protein_id="AEL32241.1"
FT /translation="MASSSSNRLFSHRNANTFLTYPKCPENPEIACQMIWELVVRWIPK
FT YILCAREAHKDGSLHLHALLQTEKPVRISDSRFFDINGFHPNIQSAKSVNRVRDYILKE
FT PLAVFERGTFIPRKSPFLGKSDSEVKEKKPSKDEIMRDIISHSTSKEEYLSMIQKELPF
FT DWSTKLQYFEYSANKLFPEIQEEFTNPHPPSSPDLLCNESINDWLQPNIFQVSPEAYML
FT LQPTCYTLEDAISDLQWMDSVSSHQMKDQESRASTSSAQQELENLLGPEA"
XX
SQ Sequence 2690 BP; 692 A; 633 C; 688 G; 677 T; 0 other;
hq693423 Length: 2690 04-SEP-2011 Type: N Check: 6571 ..
1 atggatccac agaacgccct gtattatcag ccgcgggtac ccacagcagc
51 tccgacatcc ggaggagtgc cgtggagtcg cgtaggcgag gtagctattt
101 tgagctttgt tgcattgatt tgcttttacc tgctttacct ttgggtgctg
151 agagatctta tcttagttct gaaggctcga caaggcagat ccacggagga
201 gctgatattt ggtggacaag ctgtggatag gagcaaccct atccctaatc
251 taccagcacc accaagtcag ggcaatcccg ggccatttgt tccaggcacg
301 ggataagcaa tcagccatgt ccacgtccaa gaggaagcgg ggagatgatg
351 cgaattggag taagcgggtg cctaagaaga agccttcttc agctgggctg
401 aagagggctg gaagcaaggc cgataggcca tccctccaaa tccagacact
451 ccagcatgct gggaccacca tgataactgt cccatccgga ggagtatgtg
501 acctcatcaa cacctatgcc cgaggatctg acgagggcaa ccgccacacc
551 agcgagactc tgacgtacaa gatcgccgtc gactaccact tcgttgccga
601 cgcggctgcc tgccgctact ccaacaccgg aaccggtgta atgtggctgg
651 tgtatgacac cactcccggc ggacaagctc cgaccccgca aactatattt
701 gcctaccctg acacgctaaa agcgtggccg gccacatgga aagtgagccg
751 ggagctgtgt catcgcttcg tggtgaaacg gcgatggttg ttcaacatgg
801 agaccgacgg tcggattggt tcggatatcc ctccctcgaa tacaagttgg
851 aagccttgca agcgcaacat ctacttccac aagttcacga gtgggttggg
901 agtgagaacg cagtggaaga atgtaacgga cggaggagtt ggtgccatcc
951 agagaggagc cttgtacatg gtcattgccc ccggcaatgg ccttactttt
1001 actgcccatg ggcagacccg tctgtacttt aagagtgttg gcaaccagta
1051 atgaataaaa actcccgttt tattatattt gatgaatgct gaaagcttac
1101 attaatatgt cgtgcgatgg cacgaaaaaa cacacgcaaa caatacaggg
1151 gggtagtcgg cgggcggcta agggtggtgc tcggcgggca gaacatcgaa
1201 aaatcaagat ctatatgaat tacacttcct ccgtaggagg aagcacaggg
1251 ggagaatacc atttctcccc cggcgacata atgtaaatga tgcagtttgc
1301 ctcgaaatac tccagctgcc ctggagtcat ttccttcatc caatcttcat
1351 ccgagttggc gaggattatt gtaggcttag acttcttctg cacctttttc
1401 ttcttaccat acttggggtt tacaatgaaa tccctctgac agccaactaa
1451 ctgtttccaa caaggacaga atttaaacgg aatatcatct acgatgttgt
1501 agattgcgtc ttcgttgtat gaagaccaat caacattatt ttgccagtaa
1551 ttatgaaccc ctaggcttct ggcccaagta gattttccag ttcttgttgg
1601 gccgacgatg tagaggctct gctttcttga tctttcatct gatgactgga
1651 tacagaatcc atccattgga ggtcagaaat tgcatcctcg agggtataac
1701 aggtaggttg aaggagcatg taagcttcgg gactaacctg gaagatgtta
1751 ggctggagcc aatcattgat tgactcatta cacagcaaat caggtgagga
1801 tggtggatga ggattggtga actcttcctg aatctcagga aaaagcttat
1851 ttgcagagta ttcaaaatac tgcaattttg tggaccaatc aaagggaagc
1901 tctttctgga tcatggagag gtactcttct ttggaagtag agtgtgaaat
1951 aatgtctcgc attatttcat ctttagaagg ctttttttcc tttacctctg
2001 aatcagattt tcctaggaag ggggacttcc taggaatgaa agtacctctc
2051 tcaaacacag ccagaggttc cttgaggatg taatccctca ccctgttaac
2101 tgacttggca ctctgaatgt ttgggtgaaa cccatttata tcaaagaacc
2151 ttgagtcaga tatccttacc ggcttctctg tttgaagcaa tgcatgtaaa
2201 tgcaaacttc catctttatg tgcctctcgg gcacatagaa tgtacttggg
2251 aatccaacga acaacgagct cccagatcat ctgacaggcg atttcaggat
2301 tttctggaca ctttggatag gttaggaacg tgttagcgtt ccggtgtgag
2351 aacagacggt tggatgagga ggaggccata gccgacgacg gaggttgagg
2401 ctgagggatg gcagactggg agctccaaac tctatagtat acctgtgcgc
2451 cttcgaaatc cgccgctccc ttgttttata gtggttgtaa atgggccgga
2501 ccgggccggc ccagcaggaa aagaaggcgc gcactaatat taccgcgcct
2551 tcttttcctg cgagggcccg gtagggaccg agcgctttga tttaaagtct
2601 ggtcctgctt tgtctgattt atctaaagca gcccaatcta aagaaaccgg
2651 tcccgggcac tataaattgc ctaacaagtg cgattcattc