Sequence of DPV Maize streak virus
Maize streak virus isolate MSV-A_ZM_Chi9_Z17-2008, complete genome.
ACC No: HQ693460
Dated: 2011-09-04 | Length: 2689 | CRC: -1158695819
ID HQ693460; SV 1; circular; genomic DNA; STD; VRL; 2689 BP.
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AC HQ693460;
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DT 05-AUG-2011 (Rel. 109, Created)
DT 04-SEP-2011 (Rel. 110, Last updated, Version 3)
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DE Maize streak virus isolate MSV-A_ZM_Chi9_Z17-2008, complete genome.
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KW .
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OS Maize streak virus
OC Viruses; ssDNA viruses; Geminiviridae; Mastrevirus.
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RN [1]
RP 1-2689
RX DOI; 10.1128/JVI.00640-11.
RX PUBMED; 21715477.
RA Monjane A.L., Harkins G.W., Martin D.P., Lemey P., Lefeuvre P.,
RA Shepherd D.N., Oluwafemi S., Simuyandi M., Zinga I., Komba E.K.,
RA Lakoutene D.P., Mandakombo N., Mboukoulida J., Semballa S., Tagne A.,
RA Tiendrebeogo F., Erdmann J.B., van Antwerpen T., Owor B.E., Flett B.,
RA Ramusi M., Windram O.P., Syed R., Lett J.M., Briddon R.W., Markham P.G.,
RA Rybicki E.P., Varsani A.;
RT "Reconstructing the history of maize streak virus strain a dispersal to
RT reveal diversification hot spots and its origin in southern Africa";
RL J. Virol. 85(18):9623-9636(2011).
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RN [2]
RP 1-2689
RA Monjane A.L., Harkins G.W., Martin D.P., Lemey P., Lefeuvre P.,
RA Shepherd D.N., Oluwafemi S., Simuyandi M., Zinga I., Komba E.K.,
RA Kakouttene D.P., Mandakombo N., Mboukoulida J., Semballa S., Tagne A.,
RA Tiendrebeogo F., Erdmann J.B., van Antwerpen T., Owor B.E., Flett B.,
RA Ramusi M., Windram O.P., Syed R., Lett J.-M., Peterschmitt M.,
RA Briddon R.W., Markham P.G., Rybicki E.P., Varsani A.;
RT ;
RL Submitted (08-DEC-2010) to the INSDC.
RL Electron Microscope Unit, University of Cape Town, Private Bag, Rondebosch,
RL Cape Town, WP 7701, South Africa
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FH Key Location/Qualifiers
FH
FT source 1. .2689
FT /organism="Maize streak virus"
FT /host="maize"
FT /isolate="MSV-A_ZM_Chi9_Z17-2008"
FT /mol_type="genomic DNA"
FT /country="Zambia"
FT /lat_lon="11.81 S 32.78 E"
FT /collection_date="2008"
FT /db_xref="taxon:10821"
FT CDS 1. .306
FT /codon_start=1
FT /product="movement protein"
FT /protein_id="AEL32350.1"
FT /translation="MDPQNALYYQPRVPTAAPASAGVPWSRVGEVAILSFVALICFYLL
FT YLWVLRDLILVLKARQGRSTEELIFGGQAVDRSNPIPNLPAPPSQGNPGPFVPGTG"
FT CDS 317. .1051
FT /codon_start=1
FT /product="coat protein"
FT /protein_id="AEL32351.1"
FT /translation="MSTSKRKRGDDSNWSKRVPKKKPSSAGLKRAGSKADRPSLQIQTL
FT QHAGTTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAIDYHFVADAAACRYSNT
FT GTGVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMET
FT DGRIGSDIPPSNASWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAP
FT GNGLTFTAHGQTRLYFKSVGNQ"
FT CDS complement(1560. .2378)
FT /codon_start=1
FT /product="RepA"
FT /protein_id="AEL32352.1"
FT /translation="MASSSSNRQFSHRNANTFLTYPKCPENPEIACQMIWELVVRWIPK
FT YILCAREAHKDGSLHLHALLQTEKPVRISDSRFFDINGFHPNIQSAKSVNRVRDYILKE
FT PLAMFERGTFIPRKSPFLGKSDSEVKEKKPSKDEIMRDIISHSTTKEEYLSMIQKELPY
FT DWSTKLQYFEYSANKLFPEIQEEFTNPHPQSSPDLLCNESINDWLQPNIFQVSPEAYML
FT LQPTCYTLEDAISDLQWMDNVSSHQMKDQESRASTSSAQQEQENLLGPEA"
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SQ Sequence 2689 BP; 681 A; 637 C; 697 G; 674 T; 0 other;
hq693460 Length: 2689 04-SEP-2011 Type: N Check: 8259 ..
1 atggatccac agaacgccct gtattatcag ccgcgggtac ccacagcagc
51 tccggcatcc gcaggagtgc cgtggagtcg cgtaggcgag gtagctattt
101 tgagctttgt tgcactgatt tgcttttacc tgctttacct ttgggtgttg
151 agagacctta tcttagttct gaaggctcga caaggcagat ccacggagga
201 gctgatattt ggaggacaag ctgtggatag gagcaaccct atccctaatc
251 taccagcacc gccaagtcag ggcaatcccg ggccatttgt tccgggcacg
301 ggataagcat tcagccatgt ccacgtccaa gaggaagcgg ggagatgatt
351 cgaattggag taagcgggtg cctaagaaga agccttcttc agctgggctg
401 aagagggcgg gaagcaaggc cgataggcca tccctccaaa tccagacact
451 ccagcatgct gggaccacca tgataactgt cccatccgga ggagtatgtg
501 atctcatcaa cacctatgcc cgaggatctg acgagggcaa ccgccacacc
551 agcgagactc tcacgtacaa gatcgccatc gactaccact tcgttgccga
601 cgcggcagcc tgccgctact ccaacaccgg aaccggtgta atgtggctgg
651 tgtatgacac cactcccggc ggacaagctc cgaccccgca aactatattt
701 gcctaccctg acacgctgaa agcgtggccg gccacatgga aggtgagccg
751 ggagctgtgt catcgcttcg tggtgaaacg gcgatggttg ttcaacatgg
801 agaccgacgg gcggattggt tcggacattc ctccctcgaa tgcaagttgg
851 aagccttgca agcgcaacat ctacttccac aagttcacga gcgggttggg
901 agtgagaacg cagtggaaga atgtaacgga cggaggagtt ggtgccatcc
951 agagaggagc gttgtacatg gtcattgccc ccggcaatgg tcttacattt
1001 actgcccatg ggcagacccg tctgtacttt aagagtgttg gcaaccagta
1051 atgaataaaa actcccgttt tattatatct gatgaatgct gaaagcttac
1101 attaatatgt cgtgcgatgg cacgaaaaaa cacacgcaat caatacaggg
1151 gggtagtagg cgggcggcta agggtggtgc tcggcgggca gaacatcgaa
1201 aaatcaagat ctatctgaat gtactgcctc cgtaggaggc agctcagggg
1251 gagaatacca cttctccccc ggcgacataa tgtaaatgac gcagtttgcc
1301 tcgaaatact ccagctgccc tggagtcatt tccttcatcc aatcttcatc
1351 cgagttggcg aggattattg taggcttaga cttcttctgc accttcttct
1401 tcttaccata cttggggttt acaatgaaat ccctctgaca gccaactaac
1451 tgtttccaac aaggacagaa tttaaacggg atatcatcta cgatgttgta
1501 gattgcgtct tcgttgaatg aagaccaatc aacattattt tgccagtaat
1551 tatgaacccc taggcttctg gcccaagtag attttcctgt tcttgttggg
1601 ccgacgatgt agaggctctg ctttcttgat ctttcatctg atgactggat
1651 acattatcca tccattggag gtcagaaatt gcatcctcga gggtataaca
1701 ggtaggttga aggagcatgt aagcttcggg actaacctgg aagatgttag
1751 gctggagcca atcattgatt gactcattac aaagtaaatc aggtgaggat
1801 tgcggatgag gattggtgaa ctcttcctga atctcaggaa aaagcttatt
1851 tgcagagtat tcaaaatact gcaattttgt ggaccaatca tagggaagct
1901 ctttctggat catggagagg tactcttctt tggtagtaga gtgtgaaata
1951 atgtctcgca ttatttcatc tttggaaggc tttttttcct taacttctga
2001 atcagatttt cctaggaagg gggatttcct aggaatgaaa gtacctctct
2051 caaacatagc cagaggttcc ttgaggatgt aatccctcac cctgtttact
2101 gacttggcac tctgaatgtt tgggtgaaac ccattaatat caaagaacct
2151 tgagtccgat attcttaccg gcttctctgt ttgaagcaat gcatgtaaat
2201 gcaaacttcc atctttatgt gcctcccggg cacatagaat gtacttggga
2251 atccaacgaa caacgagctc ccagatcatc tgacaggcga tttcaggatt
2301 ttctggacac tttggatagg tgaggaacgt gttagcgttc cggtgtgaga
2351 actgacggtt ggatgaggag gaggccatag ccgacgacgg aggctgaggc
2401 tgagggatgg cagactggga gctccaaact ctatagcata cctgtgcgcc
2451 ttcgaaatcc gccgctccct tgtcttatag tggttgtaaa tgggccggac
2501 cgggccggcc cagcaggaaa agaaggcgcg cactaatatt accgcgcctt
2551 cttttcctgc gagggcccgg tagggcccga gcgatttgat gtaaagcctg
2601 gttctgcttt gtatgattta tctaaagcag cccaatctaa agaaaccggt
2651 cccgggcact ataaattgcc taacaagtgc gattcattc