Sequence of DPV Sweet potato collusive virus
Sweet potato caulimo-like virus isolate Mad1, complete genome.
ACC No: HQ694978
Dated: 2011-04-21 | Length: 7723 | CRC: -490337856
ID HQ694978; SV 1; circular; genomic DNA; STD; VRL; 7723 BP.
XX
AC HQ694978; HQ005308;
XX
DT 04-APR-2011 (Rel. 108, Created)
DT 21-APR-2011 (Rel. 108, Last updated, Version 2)
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DE Sweet potato caulimo-like virus isolate Mad1, complete genome.
XX
KW .
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OS Sweet potato caulimo-like virus
OC Viruses; Retro-transcribing viruses; Caulimoviridae; Cavemovirus;
OC unclassified Cavemovirus.
XX
RN [1]
RP 1-7723
RX DOI; 10.1007/s00705-010-0886-7.
RX PUBMED; 21184242.
RA De Souza J., Cuellar W.J.;
RT "Sequence analysis of the replicase gene of 'sweet potato caulimo-like
RT virus' suggests that this virus is a distinct member of the genus
RT Cavemovirus";
RL Arch. Virol. 156(3):535-537(2011).
XX
RN [2]
RP 1-7723
RX PUBMED; 21307225.
RA Cuellar W.J., De Souza J., Barrantes I., Fuentes S., Kreuze J.F.;
RT "Distinct cavemoviruses interact synergistically with sweet potato
RT chlorotic stunt virus (genus Crinivirus) in cultivated sweet potato";
RL J. Gen. Virol. 92(PT 5):1233-1243(2011).
XX
RN [3]
RP 1-7723
RA DeSouza J., Cuellar W.J.;
RT ;
RL Submitted (29-JUL-2010) to the EMBL/GenBank/DDBJ databases.
RL Integrated Crop Management Division, International Potato Center (CIP), Av.
RL La Molina 1895, Lima L12, Peru
XX
RN [4]
RP 1-7723
RA Cuellar W.J., De Souza J.A., Barrantes I., Fuentes S., Kreuze J.F.;
RT ;
RL Submitted (09-DEC-2010) to the EMBL/GenBank/DDBJ databases.
RL Integrated Crop Management Division, International Potato Center, 1895 La
RL Molina Av., La Molina, Lima L12, Peru
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CC On Apr 4, 2011 this sequence version replaced gi:312844530.
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FH Key Location/Qualifiers
FH
FT source 1. .7723
FT /organism="Sweet potato caulimo-like virus"
FT /host="sweet potato"
FT /isolate="Mad1"
FT /mol_type="genomic DNA"
FT /country="Portugal:Madeira"
FT /collected_by="Brunt A."
FT /collection_date="1988"
FT /db_xref="taxon:930168"
FT misc_feature 1. .18
FT /note="region complementary to the 3' terminal end of the
FT host tRNA-Met; recognized by the viral reverse
FT transcriptase as the transcription initiation site;
FT characteristic of pararetroviral genomes"
FT CDS 55. .3849
FT /codon_start=1
FT /product="coat protein/movement protein"
FT /note="ORF 1; polyprotein"
FT /protein_id="AEA36696.1"
FT /translation="MDKEFNNLNIGQHVYKISENKLPINSFLKWPGYTHATFTPYVVIG
FT DAGDYPHRQLNWTNKFLWNKLGNLNNNDINILRKPIITEEDKKELSEEAKKIIDEKFED
FT RIKYLKNINQTLDLKWFKFEQEQNKKTEELLDTLRILNKELKQLKEEIKNIKKKNEEII
FT YPPNTYTINMVTEEGKKFDQFLYMEQLERERISKEQAIEKILENTYILNNNIGYSINRI
FT ETLNTNVRTNKRPETILDTPQYAKYREQQRIIKEEIKNEPKDNEYEQFMNWKKDKEKEK
FT LEFEEAERIRKGKNKVIIIPDIMPDPPKEDINQQLLRIIEEMRKEIKELKTVKEDVEHL
FT KIQLKQDDIQMMLESENELDPDNLDKEEVIEKIQNINIESEEENKSEESNSTSESESES
FT IEPELNVKEEQYEEDDRRQYKPYSKKYKTNVRYARNINGQENRRSDYINRRRTQFEPNY
FT IHTDIGENGEALNLNCIDAKESEERIEKWAQSMSITIAKQNMTNDNAKKFIIRTLLGDV
FT KDWYENLTESAKSQLEGTSALSTLANIEVAIRAEFGKLGIENDATKMTRKKNSARAKLM
FT QLSICNMRMENLKAYICEFKEYFYKAAYSDEEREQILDIFYTKLPDPWGMSILEAYNLN
FT EKGRITLDSLGSRITYLFESITSRCEQDRMNKIAKKTMKLDCGYYEVGQYGCKTKNYKK
FT KTYKKRKKRYIPIYRKNKPKPWMKYYRPKNKIKRNKKPCTCYNCGEIGHISPNCKKPKK
FT SNKTINNIEMIEFIGDQEELEFIINDNDIIYIEQFIDTENSDIELEMEFGFDEINMFQE
FT SESSESSIIRSNDESEQDRPTKMIFSKEKFSQIIEKDLDLTKNDIFKNKNLKQLFGKKD
FT TEYFIVTDIEHPIDVKYVQNMEQKVNLPLYNQQIFEKEIQKIPDKDKNKIKNIHLAAVE
FT VIIKGYFREGIDTPIELLLCDDRIVYPNNGSIIATLVGNLIYQQVKFKKIINYSISVRD
FT KNLEKSLVMYWNLDGIKMIENSKIFSIRLRNLYVLSEKHIVKNKKQYTENIIIEPLFQE
FT VIQNNDVKYIDYIKPEKDYEQTKMITYKNKFETGESSRKNEQDIGRIIKESKGISNKII
FT TLPRESYKQNRNQFHIKGKIGNKYYPILIDTGAARSYISSKIIDEQSIKIKPISESVIS
FT IDYNNIRTSYNNEAELDIEIIDLNFKIHNIKFNGLIETIELLEQDKQQVLIGIDTLEQL
FT KPYSITSDYLEINIGYKPIKIKRELKDIYELHRQLSQHE"
FT CDS 3842. .5767
FT /codon_start=1
FT /product="replicase"
FT /note="ORF 2; polyprotein; contains an aspartic proteinase
FT and reverse transcriptase with ribonuclease H domain"
FT /protein_id="ADR03142.2"
FT /translation="MNRMTYMTVKITIPTYMSRIYHGLFDTGANTCVCKTKVLPPEKWI
FT EIDNKVLTGFSEEKNVIKYRADNIKIMIAKKEFIIPYIYAMDNINADIIIGATFYNKYS
FT PITIDMEKGIIKFTNKGEVYPNYLVKYPRKKVLIPWEKGNPSIIQPLQNEQINNINEVE
FT ELNNILGEDIYGDNPLKHWEKHKTYAKIELKNPDDHIYKPPINYQESDYKEFKMHIDEM
FT VKEGFIEECKNLENKKYSSPAFIVNKHSEIKRGKSRMVIDYKDLNKKAKVIKHPIPNKD
FT ILINRGIKANYFSKFDCKSGFYHIKLEEDSKKYTAFTVPQGYYVWIVLPFGYHNSPSIY
FT QQFMDGIFRPYYDFILVYIDDILIFSKTYEEHKIHLEIFRNIIIKHGIVLSKKKAEIGK
FT QKIEFLGVKIEQGGIELQPHIIDKILEKHIKIKSKKELQSILGLVNQIRNFLPNLSKIL
FT LPIQKKLKIKNEEVWEWTKEDEQNIIKLKDYCKDNVIKMTYPVEEKDMNWIIEVDASKE
FT YYGNCLKYKKDKIEYICRYNSGTFKEHEKNYDINRKELIAIYKGLEHYAIFTTQGKKLV
FT RTDNSQAYYWIKNSKIKNSIDMKNVKGILAKIIMYDFDIEIIDGKTNIVADFLSRNGTD
FT DATITG"
FT CDS 5697. .6893
FT /codon_start=1
FT /product="putative inclusion body protein"
FT /note="ORF 3; IBP"
FT /protein_id="AEA36697.1"
FT /translation="MEKLTSLLISCPEMEQMMQQLLAEMQKLNATVEKQNSRIEQLENE
FT LEKEKGKKPLTEEKIISEKELEKEKEISWKAKIKKYGEASSKEEKIIEKDVWQKPKGTH
FT IGSIYVTEFVRLMNYLNSRHANLNEIYSLTDYNKLVADKNTDERLIRAAYQHGLLHVHY
FT IESANQIKMYDEGIVNAYLKLAQLTKAKCIYIRFYTAFAEVTKEGIIPKIEAIKLGITY
FT EKIQYDVCEQELFEENRVHDFLRHKKAIGLLTIRRELESTEGNIWVYENRNNRIIYAPS
FT RARKEEVKKVVAAWQQKIYTPERNIPDCGITAPCISEPCLKILCELSKNQLVVKHQCKY
FT CGKMKKKEEVDYSLPEDIIMKDVDEDSDVEDKKEENAYDKDAFRPDKVADAGDDVKEK"
FT CDS 7459. .7608
FT /codon_start=1
FT /product="hypothetical protein"
FT /note="ORF a"
FT /protein_id="AEA36698.1"
FT /translation="MAELNYGIANHQDIYQLLIKRVYPIIWSCRKIIVFYDYIAFGSYT
FT IEYP"
XX
SQ Sequence 7723 BP; 3612 A; 788 C; 1200 G; 2123 T; 0 other;
hq694978 Length: 7723 21-APR-2011 Type: N Check: 2938 ..
1 tggtatcaga gcatagttat aaatattaaa aatataaagc ttattgagct
51 tagtatggat aaagaattta ataacttgaa tataggacaa catgtatata
101 aaatatcaga gaataaatta ccaataaata gttttttaaa atggcctggt
151 tatactcatg caacatttac accttatgta gtaataggag atgcaggaga
201 ttatccacat agacaattaa actggactaa taaatttctt tggaacaaat
251 taggaaattt aaataataat gatataaata tacttagaaa acccataatt
301 acagaagaag ataaaaaaga attaagcgaa gaagcaaaaa agataattga
351 tgaaaaattc gaagatagaa taaaatattt aaaaaatata aatcaaacgt
401 tagacctaaa atggtttaaa tttgaacaag aacaaaacaa aaagacggaa
451 gaattattag atacgttaag aatattgaat aaagaactaa aacaattaaa
501 agaagaaata aaaaatatta aaaagaagaa tgaagaaata atctatccac
551 caaatacata tactattaat atggtaacag aagaaggtaa aaaattcgat
601 caattcttat atatggaaca attagaacgt gaaagaataa gtaaagaaca
651 agctatagaa aaaatattag aaaatactta tatattaaat aataatatag
701 gatattcgat aaatagaata gaaacattaa atactaatgt tagaacaaat
751 aaaagaccag aaaccatatt ggatactccc caatatgcta aatatagaga
801 acaacaaaga ataataaaag aagaaattaa aaatgaacca aaagataatg
851 aatacgaaca atttatgaat tggaaaaaag ataaagaaaa agaaaaatta
901 gaatttgaag aagctgaaag aattagaaaa ggtaaaaata aagtaatcat
951 aataccagat ataatgccag atccacctaa agaagatata aaccaacaat
1001 tattaagaat aatagaagaa atgcgtaaag aaataaaaga attaaaaact
1051 gtaaaagaag atgtagaaca tttaaaaatt caattaaaac aagatgatat
1101 acaaatgatg ttagaatctg agaatgaatt agatccagat aatttagaca
1151 aagaagaagt aatagaaaaa atccaaaata taaacataga atctgaagaa
1201 gaaaataaaa gtgaagaaag taatagtact agtgaatcag aatcagaatc
1251 tatagaacct gaattaaatg taaaagaaga acaatatgaa gaagatgata
1301 ggagacaata taaaccttat tctaaaaaat ataaaacaaa cgtaagatat
1351 gcaagaaata taaacggaca agaaaataga aggagtgatt atataaatag
1401 aagaagaaca caatttgaac caaattatat acacacagat ataggagaaa
1451 acggtgaagc attaaattta aattgtatag atgcaaaaga atcagaagaa
1501 cgtatagaaa aatgggcaca aagtatgtct ataactatag caaaacaaaa
1551 tatgactaat gataatgcta aaaaatttat aataagaact ttattaggag
1601 atgtaaaaga ttggtatgag aatttaactg aatcagctaa aagtcaatta
1651 gaaggaacat cagcattaag tactttagca aatatagaag tagcaattag
1701 agcagaattt ggaaaattag gaatagaaaa tgatgcaact aaaatgacac
1751 gtaaaaagaa tagtgcaaga gctaagttaa tgcaattaag tatttgtaat
1801 atgagaatgg agaatttaaa agcttatata tgtgaattta aagaatattt
1851 ttataaagca gcatatagtg atgaagaaag ggaacaaata ttagatatat
1901 tttatactaa attacctgac ccttggggta tgtcaatttt agaagcttat
1951 aatttaaatg aaaaaggaag aattacacta gatagtttag gatccagaat
2001 aacatattta tttgaatcaa taacttcaag atgcgaacaa gataggatga
2051 ataaaatagc taaaaagaca atgaaattag attgtggtta ttatgaagta
2101 ggacaatatg gatgtaaaac aaaaaattat aaaaagaaga cttataaaaa
2151 acgtaaaaag agatatatac caatatatag aaaaaataaa cctaaacctt
2201 ggatgaagta ttatagacct aaaaataaaa taaaaagaaa taaaaaacct
2251 tgtacttgtt ataattgcgg agaaatagga catataagtc caaattgtaa
2301 aaaacctaaa aaatcaaata aaactattaa taatatagaa atgatagaat
2351 ttataggaga tcaggaagaa ttagaattta taataaatga taatgatata
2401 atatatatcg aacaattcat agatacagaa aatagtgata tagaactaga
2451 aatggaattt ggatttgacg aaataaatat gtttcaagaa agtgaatcaa
2501 gtgaatcaag tataattaga tctaatgatg aatcagaaca agatagacca
2551 actaaaatga tatttagtaa agagaagttt agtcaaataa tagaaaaaga
2601 tttagattta actaaaaatg atattttcaa aaataaaaat ctcaaacaac
2651 tatttggtaa aaaagatact gaatacttta tagtaacaga tatagaacac
2701 ccaatagatg ttaaatatgt tcaaaatatg gaacaaaaag taaatttacc
2751 tttatataat caacaaatat ttgagaaaga aatacaaaaa attccagaca
2801 aagataaaaa taaaataaaa aatattcatt tagcagcagt agaagtaatt
2851 ataaaaggat attttagaga aggaatagat acaccaatag aattattatt
2901 atgtgatgat agaatagtat atccaaataa tggaagtata atagcaacac
2951 ttgtagggaa tttaatatat caacaagtca aatttaaaaa gataattaac
3001 tatagtataa gtgtaagaga taaaaattta gaaaaatctt tagtaatgta
3051 ttggaattta gatggaataa aaatgataga aaatagtaaa atattttcaa
3101 taagacttag gaatctttat gtactaagtg aaaaacatat tgttaaaaat
3151 aaaaaacaat atacagaaaa tataataatt gaacccttat ttcaagaagt
3201 aatacaaaat aatgatgtaa aatatataga ttatattaaa ccagaaaaag
3251 attacgaaca aactaaaatg ataacttata aaaataaatt tgaaacagga
3301 gaatcaagta gaaaaaatga acaagatata ggtagaataa taaaagaaag
3351 taaaggaata agtaataaaa taataacttt acctagagaa tcatataaac
3401 aaaataggaa tcaatttcat ataaaaggaa agataggtaa taaatattac
3451 ccaatactta tagatacagg agcagctaga tcatacataa gttctaaaat
3501 tatagatgaa caaagtataa aaattaagcc aattagtgaa tcagttataa
3551 gtattgatta taataatatt agaactagtt ataataatga agcagaatta
3601 gatatagaaa taatagatct aaattttaaa atccataata ttaaatttaa
3651 tggattaata gaaactatag aattattaga acaagataaa caacaagtat
3701 taataggaat tgatactttg gaacaattaa aaccctatag tataactagt
3751 gattatttag aaataaatat aggatacaaa ccaattaaaa ttaaaagaga
3801 attgaaggat atatatgaat tacatagaca gttaagtcaa catgaataga
3851 atgacttaca tgactgtaaa aattactata ccaacatata tgtcaagaat
3901 ttaccatgga ttatttgata ctggagcaaa tacttgtgta tgtaaaacaa
3951 aagttttacc accagagaaa tggatagaaa tagataataa agtactaaca
4001 ggattttcag aagagaaaaa tgttatcaaa tatagagcgg ataacataaa
4051 aataatgata gctaaaaaag aatttataat accatatatt tatgcaatgg
4101 ataatataaa tgcagatata attataggag caacattcta taataaatat
4151 agcccgataa caattgatat ggaaaaagga ataattaaat tcacaaataa
4201 aggagaagtt tatcctaatt atttagttaa ataccctagg aaaaaagtat
4251 taataccatg ggaaaaagga aatcccagta ttattcaacc tttacaaaat
4301 gaacaaatta ataatataaa tgaagtagaa gaattaaata atatattagg
4351 agaagatatt tatggagata atcctttgaa acattgggag aaacataaaa
4401 catatgctaa aatagaatta aaaaatccag atgatcatat atataaacca
4451 cctataaatt atcaagaatc agattataaa gaatttaaaa tgcatataga
4501 cgagatggtt aaagaaggat ttattgaaga atgtaaaaat ttagaaaata
4551 aaaaatatag ttcaccagct tttatagtaa acaaacattc agaaataaaa
4601 agaggaaaaa gtagaatggt aatagactat aaagatttaa acaaaaaagc
4651 taaagtaatt aaacatccta taccaaataa agatatatta ataaatagag
4701 gaattaaagc taattatttt agtaaattcg actgtaaatc aggattttat
4751 catattaaac tagaagaaga tagtaaaaaa tatacagcat ttacagtacc
4801 acaaggatat tatgtatgga ttgtattacc ttttggatat cataattcac
4851 caagtatata tcaacaattt atggatggaa tatttagacc atattatgat
4901 tttatacttg tatatataga tgatatatta atattttcga aaacatacga
4951 agaacataaa atacatttgg aaatatttag aaatataata ataaaacatg
5001 gaatagtatt aagtaagaaa aaagcagaga taggaaaaca aaaaatagaa
5051 tttctaggag ttaagataga acaaggagga atagaattac agcctcatat
5101 aatagataaa atattagaaa aacatataaa aataaaaagt aaaaaagaat
5151 tacaatcaat attaggatta gtaaaccaaa ttagaaattt cttaccaaat
5201 ttaagtaaaa tacttttacc tatacaaaag aaactaaaaa taaaaaatga
5251 agaagtatgg gaatggacaa aagaagatga acaaaatata ataaaattaa
5301 aagattattg taaggataat gttataaaaa tgacttatcc agtagaagag
5351 aaagatatga attggataat agaagtagat gcaagtaaag aatattatgg
5401 caattgtctt aaatataaaa aagataaaat tgaatatata tgtagatata
5451 attcaggaac atttaaagaa catgagaaaa attatgatat aaatagaaaa
5501 gagcttatag caatatacaa aggattagaa cattatgcta tttttactac
5551 tcaaggtaaa aaattagtta gaacagataa tagtcaagct tattattgga
5601 taaaaaatag taaaataaaa aattctattg atatgaaaaa tgtaaaagga
5651 atactagcaa aaataataat gtatgatttc gatatagaaa ttattgatgg
5701 aaaaactaac atcgttgctg atttcttgtc cagaaatgga acagatgatg
5751 caacaattac tggctgaaat gcaaaaatta aatgcaacag ttgagaagca
5801 aaactcgagg attgaacaac tagagaacga attagaaaaa gaaaaaggta
5851 agaaacctct tactgaagaa aaaattatct ctgaaaaaga attagaaaaa
5901 gaaaaagaaa tatcttggaa ggcaaaaatt aaaaaatatg gtgaagcctc
5951 ctcaaaagaa gaaaaaatta ttgaaaaaga tgtgtggcaa aaacctaaag
6001 gcacacatat tggaagtatt tatgttacgg aattcgtccg acttatgaat
6051 tatttaaata gcagacatgc taacttaaat gaaatatata gtttaactga
6101 ctataataag ttagtagcag ataaaaatac tgatgaaaga cttatacgtg
6151 cagcatatca gcatggatta ttacatgtac attacataga atctgcgaat
6201 caaataaaaa tgtatgatga aggaatagtt aatgcatatt taaaattagc
6251 acaacttact aaagcaaaat gtatttatat tcgtttctat acggcctttg
6301 ccgaagtaac aaaagaagga attatcccaa aaatagaagc aataaagctc
6351 gggattactt atgaaaaaat tcagtatgat gtatgtgagc aagaattatt
6401 tgaagaaaat agagtgcatg atttccttag acataaaaaa gctattggat
6451 tacttactat tcgtagagaa ttagaatcaa ctgaaggaaa tatttgggta
6501 tatgaaaata ggaataatag aattatttat gcccctagta gagcaagaaa
6551 agaagaagtg aaaaaagtag tggccgcatg gcaacaaaaa atatatactc
6601 ctgaaagaaa tatcccagat tgtggaatta cagctccttg tatttcggag
6651 ccttgtttaa aaatattgtg tgaattaagt aaaaatcagt tagttgtaaa
6701 acatcaatgt aaatactgcg ggaagatgaa gaagaaggaa gaagtagact
6751 actcgctacc ggaggacata atcatgaaag atgtagatga agatagcgac
6801 gtagaagata agaaggaaga aaacgcgtat gacaaagacg catttagacc
6851 ggacaaagta gctgacgcag gcgatgacgt caaagagaaa taattaaccg
6901 gcaaaaacaa aagtggcgga ccccagcact gtttacttta cgactttcga
6951 ataaagttgg gacccagtca ctgttcatga atagtatcgg acaacgaccg
7001 aaagcgacga ggaatcttca ctgtttacca ctgtgcggat ttcaaatttc
7051 tttagttacg tccgaatagt agtttgttta gtttctatat aaacgtttca
7101 ttcgaacgat ttcagatatc gagaaatatc gaaaaatatc gaaatatatc
7151 gaaacatatc gaatcgttca actctctctc tcttgtaaac atttcttcga
7201 atatataaaa gttttatttt tctttcatcc tacgctcaat ctttcaagta
7251 agttttattg ctttatttac attatgtgtg agtagtccct caaaggactt
7301 ttcctaaagg gaaagatcta tatgaaccgc atgatgatat taagatgcat
7351 tcgtgtttat gagtagtact gatgaaatga gctgtgtata ggcttgtgag
7401 atagttgaaa atgctaaaag tacccgttgt aggccaggag agccgttgtt
7451 aggggaaaat ggcagaatta aactatggaa ttgccaacca ccaggacata
7501 tatcagttac ttataaaacg tgtatatcct atcatatggt catgtcgcaa
7551 aattatagtc ttttatgact atatagcatt tggttcatat acgattgagt
7601 atccttaagg aaaagtactt gtttttataa agctttcaca cccctgttaa
7651 tttatgcaat tttattttta atatttttcg ttccttacgc ttattttaat
7701 tccgcgcttt tattccccgt gtt