Sequence of DPV Suakwa aphid-borne yellows virus

Suakwa aphid-borne yellows virus isolate SABYV-PH12 RdRp protein (RdRp), coat protein (CP), and movement protein (MP) genes, partial cds.

ACC No: HQ700826

Dated: 2012-07-13 | Length: 1366 | CRC: 1432009716

                
ID   HQ700826; SV 1; linear; genomic RNA; STD; VRL; 1366 BP.
XX
AC   HQ700826;
XX
DT   13-JUL-2012 (Rel. 113, Created)
DT   13-JUL-2012 (Rel. 113, Last updated, Version 1)
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DE   Suakwa aphid-borne yellows virus isolate SABYV-PH12 RdRp protein (RdRp),
DE   coat protein (CP), and movement protein (MP) genes, partial cds.
XX
KW   .
XX
OS   Suakwa aphid-borne yellows virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC   Polerovirus.
XX
RN   [1]
RP   1-1366
RA   Knierim D., Tsai W.S., Dolores L.M., Kenyon L.;
RT   "First report of Suakwa aphid-borne yellows virus infecting cucurbit crops
RT   in the Philippines";
RL   Unpublished.
XX
RN   [2]
RP   1-1366
RA   Knierim D., Tsai W.S., Dolores L.M., Kenyon L.;
RT   ;
RL   Submitted (13-DEC-2010) to the INSDC.
RL   Virology, AVRDC - The World Vegetable Center, PO Box 42, Shanhua, Tainan
RL   74199, Taiwan
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1366
FT                   /organism="Suakwa aphid-borne yellows virus"
FT                   /host="Luffa acutangula (ridge patola)"
FT                   /isolate="SABYV-PH12"
FT                   /mol_type="genomic RNA"
FT                   /country="Philippines:Pangasinan province"
FT                   /collection_date="29-Jun-2010"
FT                   /db_xref="taxon:646010"
FT   gene            <1. .579
FT                   /gene="RdRp"
FT   CDS             <1. .579
FT                   /codon_start=1
FT                   /gene="RdRp"
FT                   /product="RdRp protein"
FT                   /protein_id="AEK07953.1"
FT                   /translation="SVSSWMLEDDMEVRNNLTINNNELTRRLRACWLKCISNSVICLSD
FT                   GTLLAQEFPGIQKSGSYNTSSTNSRVRVMLSIYAGASWAIAMGDDALESADTIIPLYEQ
FT                   YGLKVEVSDKLEFCSHEFKSSSLAIPTNIGKMLYKLIHGYEIFPGMSSIQVTINYLTAC
FT                   YSVLNELRHVPEAASLVAQCLAPVEAQKV"
FT   misc_feature    580. .777
FT                   /note="intergenic NCR"
FT   gene            778. .>1366
FT                   /gene="CP"
FT   CDS             778. .>1366
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /protein_id="AEK07954.1"
FT                   /translation="MNTVVVRNRNGMGRRRRNSRRNAKGNRVVVVQAPGAPQRGRRRRR
FT                   NGRRPSRGGRARGTSQGETFVFSKDNLTGSSSGAITFGPSLSDSPAFSSGILKAYHEYK
FT                   ISMVKLEFISEASSTSSGSISYELDPHCKLSSLQSTVNKFGITKSGSRTWSAKFINGME
FT                   WHDATEDQFRILYKGNGSSSTAGSFRITIRCQV"
FT   gene            806. .>1366
FT                   /gene="MP"
FT   CDS             806. .>1366
FT                   /codon_start=1
FT                   /gene="MP"
FT                   /product="movement protein"
FT                   /protein_id="AEK07955.1"
FT                   /translation="MAWEEGEGIAGAMQKATAWLWSKPLGLHSAEDDDDETVDALLEEA
FT                   ELEEQAKAKHSYSAKTISRAVPLEQSHSGRLYQTARHSALEYSRPTMSIKSQWLSWSSS
FT                   PRPLPPPQVPSLMSWTPIANLAPSNPRLINSVSQRVDHEHGALSSLTGWNGTTPQRINS
FT                   ESFTKETEVPQRRALLELQSGAKS"
XX
SQ   Sequence 1366 BP; 382 A; 341 C; 319 G; 324 T; 0 other;

hq700826 Length: 1366  13-JUL-2012  Type: N  Check: 6388  ..

       1  agcgtctcat cgtggatgct cgaggatgat atggaggtca ggaacaacct
      51  caccatcaat aataacgagc tcaccaggcg ccttcgcgca tgctggttga
     101  agtgcatatc gaactctgtg atatgcctgt ccgatgggac tttgctagcc
     151  caggagttcc ccggtataca gaaatcgggc tcctacaaca ccagctctac
     201  caactcaaga gtgagagtga tgctctccat ttacgctggt gcatcttggg
     251  ctatagcaat gggcgatgac gcccttgagt ccgctgatac gataatccca
     301  ttatatgagc aatacggact caaagtcgag gtctctgaca aactggaatt
     351  ttgttctcat gagttcaaaa gttcgagcct cgccatcccc acgaatatag
     401  ggaaaatgct ttacaagctc atacatggat atgagatctt cccggggatg
     451  tccagcattc aggtcactat caattatttg actgcctgtt attcagttct
     501  aaacgaactg cgtcatgtac ctgaagctgc ttcacttgtc gcgcagtgcc
     551  tcgctccagt cgaggcacaa aaagtttaaa caaaagcgcg cactcacaac
     601  tagccggaaa tacgttgttg caattgccgg aagttaaagt caactacaac
     651  ataggccaac cagatttcaa gtttttagca ggatttactt cgggcttcct
     701  gatagctgta ccaatttcag cacttggcct atatttgatc tacctaaaga
     751  tttctaaaca cgtgcaatcg atcgttaatg aatacggtcg tggttagaaa
     801  tcgaaatggc atgggaagaa ggagaaggaa tagccggcgc aatgcaaaag
     851  gcaaccgcgt ggttgtggtc caagcccctg gggctccaca gcgcggaaga
     901  cgacgacgac gaaacggtcg acgcccttct cgaggaggca gagctagagg
     951  aacaagccaa ggcgaaacat tcgtattcag caaagacaat ctcacgggca
    1001  gttcctctgg agcaatcaca ttcgggccgt ctttatcaga cagcccggca
    1051  ttcagctctg gaatactcaa ggcctaccat gagtataaaa tctcaatggt
    1101  taagttggag ttcatctccg aggcctcttc cacctcctca ggttccatct
    1151  cttatgagtt ggacccccat tgcaaactta gctccctcca atccacggtt
    1201  aataaattcg gtatcacaaa gagtggatca cgaacatgga gcgctaagtt
    1251  cattaacggg atggaatggc acgacgccac agaggatcaa ttccgaatcc
    1301  tttacaaagg aaacggaagt tcctcaacgg cgggctcttt tagaattaca
    1351  atcaggtgcc aagtcc