Sequence of DPV Gooseberry vein banding associated virus
Gooseberry vein banding virus isolate GB1, complete genome.
ACC No: HQ852248
Dated: 2011-08-17 | Length: 7652 | CRC: 931118417
ID HQ852248; SV 1; linear; genomic DNA; STD; VRL; 7652 BP.
XX
AC HQ852248;
XX
DT 11-MAY-2011 (Rel. 108, Created)
DT 17-AUG-2011 (Rel. 109, Last updated, Version 2)
XX
DE Gooseberry vein banding virus isolate GB1, complete genome.
XX
KW .
XX
OS Gooseberry vein banding virus
OC Viruses; Retro-transcribing viruses; Caulimoviridae; Badnavirus.
XX
RN [1]
RP 1-7652
RX DOI; 10.1007/s11262-011-0614-8.
RX PUBMED; 21533750.
RA Xu D., Mock R., Kinard G., Li R.;
RT "Molecular analysis of the complete genomic sequences of four isolates of
RT Gooseberry vein banding associated virus";
RL Virus Genes 43(1):130-137(2011).
XX
RN [2]
RP 1-7652
RA Xu D., Mock R.G., Kinard G.R., Li R.;
RT ;
RL Submitted (06-JAN-2011) to the INSDC.
RL National Germplasm Resources Laboratory, USDA-ARS, 10300 Baltimore Ave.,
RL Beltsville, MD 20705, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .7652
FT /organism="Gooseberry vein banding virus"
FT /host="Ribes uva-crispa cv. Weisse Neckartal"
FT /isolate="GB1"
FT /mol_type="genomic DNA"
FT /country="United Kingdom"
FT /db_xref="taxon:157270"
FT CDS 393. .1067
FT /codon_start=1
FT /product="unknown"
FT /note="ORF 1"
FT /protein_id="AEE39268.1"
FT /translation="MRKHTALEFEEKAEAWERTERAARHDFVFRNLKTYPRYDTNQRFP
FT SCEIPCYHYNTGAGTKVCHATISKEGGNQHFVLNSLFDLEVTQIHNQAVIHDCLTQFIQ
FT YSIYKRRKKLKKSRLPTIPEERPLATSEVSKVDPEQISQISSQLTAVKADLREIKSQQS
FT QLKTGFNQLRDSIQELLSRESEPKPIEAATAEVADQLKKQLKEVKAVLEDTKKIVRSLT
FT PE"
FT CDS 1068. .1511
FT /codon_start=1
FT /product="unknown"
FT /note="ORF 2"
FT /protein_id="AEE39269.1"
FT /translation="MSSWEDTSSKQIYKDAVTATNTLYTNGIGEGFVRPAELTGGQVTV
FT KAIRQNNTLIELVVGISARLDNAAAQLRSLDRRISELETAIQAKEAVSLPESIVDDLTK
FT EFAKLDAGTGRKAPKIGKKGKFFVWKDPKNDDQNPNRASTSRN"
FT CDS 1468. .7200
FT /codon_start=1
FT /product="polyprotein"
FT /note="ORF 3; contains MP/CP/aspartic protease/RTase/RNase
FT H"
FT /protein_id="AEE39270.1"
FT /translation="MTTRTRTEQVPRATSTRPSSRGEASSTLDDQIRGYRQTARLRHNV
FT RRRLRSLSPGGFRNTLEQQLSPDQELALSRSRRANLVPAEVLYTHNNNEVVNRVYQHYE
FT ERSAHVVDRQMDLRFIEEESYRRLVDEGLQFIHLGMGMVRIHMLHRNSAGIEAMIVFRD
FT TRWTDDRQVIASMSVDMTHGSQLVYVIPDAMLSIHDFYNHIQVSIQTRGYNGGWTGGDS
FT NMIVTRSLIGRLTNQSMTNFGYQIQGVTDYLTSHGVSCIPGEQWSVTNRSGEWRLQQSS
FT IAPPEQVPTEARLRPGPRGELSMRFTNFRDQAIRERASDEDTDSGRPETSGRDETTHYV
FT GALRFDLKGRSKPREEECFEVAAPDVLQSWMQQLSRSPPRQNRYEGPEWDTLGEPSGKY
FT DYKVRYSAPPPTPWPTKPTGWGDEEEDLPPPRFDSSSESFSGGGEIEPLEYHESSEDSY
FT EEVRRRDTENHNNLIAEGFTQEPRFPGLYAPARIEVIEEDHYEGDASEQSWSEEEPEFD
FT YPQIAAVVNQNNEPELEYPTKKFQELMAKIKGFQNQKVEIAAMNAESSGSGVTSGNFVP
FT PIATTGPSAYPPATGTHGTNIGPQDQGGWGGRMPRSRMPGGYGRPQRPWTLPSAQTENG
FT VMLIIPEDLTLAADAINRWESITINVVSKLAFDNMQDKVDYVENLLGEREKEVWTTWRM
FT KWEDEYRRMVAISDDTRNLTAAIKRVFGVHDPFTGSTFLQNQAYADLERLSCKRMEDVM
FT PFLFTYYQLAAKSGRMWTNEELSDKLFRKLPEAVGPTIEKAYKERYPGLVIGVMARINF
FT IIEYLQNVCKQAALQRSLKNLNFCRTMPVPGYYEKKKYGVRKSTTYKGKPHDTHVKVIK
FT NKDKNAPGRKCKCYLCGIEGHYARECPKKTVQPQRMAYFEGLALADNWDVLSVDVGESD
FT SEGVCSISEGETAGRMDELAAFKTQLPYPVEFEHGMFVLTIEQVTAPAVASGWRRRTEL
FT RGDQKVCPHQWSDVAEVSLEDRFCSLCGDNTPVGRRVHCTTCKANLCPVCAWLEFGIKI
FT VAAKTDATKWNYLNKDELIAQLYEHNAFLTHQNKALQARIEELTKGRNNDLIDLCEGDP
FT DLMAEICDELFRKPASGETSILRGKERVKLEILEEEVRGYREEQELRTPLQKLSEGAST
FT SYKAPEESDEERVGALLAEGELEKLAAVAGESYSRMPKGGLNKLYHLNVQFVIPKAEGG
FT HISFTVAAIIDTGCTCCCINGAKVPKEAQEEASYAMTFAGVNSRGTTRKKMRAGKMVIS
FT GNDFYTPYISVFDMDLPDIDMLIGCNFIKAMQGGIRFEGTEVTIYKKVTTIQTTLEPIK
FT LGYAEFDPDIQVELERAYYAAPVSEAELIKLRDHRLLAELKEQGFIGNDPMLHWAKNQV
FT KCKLDIINPDITIQGKPPSTATPEIKDRYQRHIDALLSIGVIRPSKSRHRTAAFITYSG
FT TSVDPKTGEEIRGKERMVFDYRALNNNTHKDQYTLPGINSIVAAVGNAKIYSKFDLKAG
FT FHQVLMEESSIPWTAFITPVGFYEWLVMPFGIANAPAVFQRKMDNCFHKLREFVAVYID
FT DILVFSNSLQEHESHLRQMLEVCRKNGLVLSPTKMKVAVTTVEFLGAIIGNGKIKLQPH
FT IVKKISEVDDESLRTLKGLRSWLGIINYARNYIPNCGTLLGPLYSKTSENGDRRMSPQD
FT WKLVRKVKELVKSLPDLELPPAGAYVVIETDGCMEGWGGVCKWKHRKGESASAEKVCAY
FT ASGKFPAIKSTIDAEMHGVMNSLEKFQIYFMDKGEVTIRTDCQAIVAFYEKLNANKPSR
FT VRWLNFCDYITNTGVKVVFEHIKGKDNVLADTLSRLTQTLAAVREMPAEQEEILRQALN
FT NTEVQPKERRILMDHICGMLEAQAQKASLHQHGLSP"
XX
SQ Sequence 7652 BP; 2277 A; 1843 C; 2017 G; 1515 T; 0 other;
hq852248 Length: 7652 17-AUG-2011 Type: N Check: 1289 ..
1 tggtatcaga gcttcggctc tacgttagtc ttcatggcta gtttctaatt
51 tacctgtgag gttgtgccat aaagcctaac ccgaggttca aacccagctg
101 aacgtcagac cttcggtctg aggttgtgtt gttttccgac gattgtcata
151 gtccgaactc cggaaaagct ttctccttac ggtattataa ggaggttgct
201 gttcgaaacg ttaggagttg cagagttgca aaaggatcag gcagcccgag
251 agccgttagc cgtgggaggc gccaaggcga atagtggtgt ccctgatatg
301 agcaaggtga gcaacgagaa acgagtatct agagcagtag ccgacaccgg
351 ccggagaata gtaaagtaac gactcaagac gtgacagtct atatgcggaa
401 acacacagcc ttagaatttg aagagaaggc tgaagcttgg gagagaactg
451 aaagggcggc gaggcacgac ttcgttttta gaaacttgaa gacttacccc
501 cggtacgata ccaaccagag gtttcccagt tgtgagatcc cttgttatca
551 ttacaatact ggcgcgggaa cgaaagtttg ccacgcaaca atctccaaag
601 aaggcggaaa ccagcacttt gtgcttaaca gtctgtttga cttagaagtc
651 actcagatcc ataaccaagc agtcatccac gactgtttga ctcagtttat
701 acagtactcc atctacaaga gaaggaagaa actcaagaag agtagactcc
751 caacgatccc ggaggagcgg cctttggcta cctctgaggt ctcgaaggta
801 gatccggagc agatctccca gatctcatcg cagctcaccg ctgtgaaggc
851 agatctccga gagatcaaga gtcagcaatc ccagctcaag acgggattca
901 accagctgag agattccatc caggaattac tctccagaga atcggaaccc
951 aaaccgattg aagcagccac agctgaggtg gccgatcagc tcaagaaaca
1001 gcttaaggaa gttaaggctg tgcttgagga caccaagaag atcgtcagat
1051 ctttgacccc ggagtagatg agcagttggg aggacacttc cagcaagcag
1101 atctacaagg acgcggtaac cgcaacaaat acgctctaca ccaacggcat
1151 cggcgaagga ttcgtcaggc cagcagagct aacagggggt caggtcaccg
1201 taaaggcgat ccgacagaac aacacgctca tcgagctagt tgttgggata
1251 agtgcgaggc tagacaacgc tgccgcacaa ctaagaagcc tcgacaggag
1301 gatatcggag ctcgaaacgg ccatccaggc aaaggaggct gtatccttgc
1351 cggaaagtat agtcgacgat ctcaccaagg agttcgccaa actagacgcc
1401 ggaacaggaa ggaaggctcc taagatcggg aagaaaggca agttcttcgt
1451 gtggaaagac ccgaagaatg acgaccagaa cccgaacaga gcaagtacct
1501 cgcgcaacta gcacccgacc cagtagtcgc ggtgaggcgt cgtcaactct
1551 agacgaccag atacgagggt acagacagac cgccagacta agacataatg
1601 tcaggcgaag actgaggagt ttatctcctg gtgggttcag gaacacgcta
1651 gagcagcagc ttagccctga tcaagagcta gcactaagta gaagccgacg
1701 agcgaacctt gtgccagcag aagtgctcta cacccacaac aacaacgagg
1751 tagtcaatag agtctaccag cactacgagg agcgaagcgc gcacgtagtg
1801 gacagacaga tggaccttcg gttcatcgag gaagagtcct atcgcaggct
1851 agtcgatgag ggcttacagt tcattcacct tggcatgggg atggtaagga
1901 tccacatgtt gcacagaaac tcggccggga ttgaggccat gattgtcttc
1951 agagacacaa ggtggaccga cgacaggcag gtgatagcca gcatgtccgt
2001 cgacatgacg cacggatcac agttggtata tgtgattccg gatgcgatgc
2051 tctccatcca tgatttctac aatcatatcc aggtcagcat acagaccagg
2101 ggatacaatg gaggatggac gggtggtgac tctaacatga tagtcaccag
2151 gtcactgatt ggtaggctaa ccaaccagag catgaccaat tttggttacc
2201 agatccaagg agtcacggac taccttacaa gccatggagt ctcttgcatt
2251 ccaggagaac agtggagcgt aaccaacaga tcaggagagt ggcgactaca
2301 gcaatcatct attgcgccac cggagcaggt ccctacggag gctaggctaa
2351 ggccaggacc cagaggtgaa ctcagtatga ggttcacgaa cttccgtgat
2401 caggcgatac gggagagagc gtcggacgaa gataccgaca gtggtagacc
2451 agagacaagt gggcgagacg aaacaacgca ctatgttggt gcgctaagat
2501 tcgatctcaa aggcaggtca aaaccacgag aagaggagtg cttcgaagta
2551 gcagctccag acgtgcttca aagctggatg cagcagctat ccagaagtcc
2601 gccaaggcag aatcgctacg aaggccctga atgggataca ctaggcgagc
2651 caagtggcaa gtatgactac aaggtcaggt actcagcacc accaccaaca
2701 ccgtggccga ctaagccaac tggttggggg gatgaagaag aggatcttcc
2751 accaccaaga tttgactcat cgtcagaatc tttttcgggg gggggggaga
2801 tagaaccttt ggagtaccac gaaagcagtg aagacagcta tgaagaggtc
2851 agaaggcgtg atacagaaaa tcacaacaac ctcatagctg agggattcac
2901 ccaggaacct aggttcccag gcttatacgc gccagccagg atagaagtga
2951 tcgaggaaga tcactatgag ggtgacgcta gtgagcaaag ctggtctgag
3001 gaagaaccgg aattcgacta tccccagata gcagcagtgg tgaaccaaaa
3051 caacgaaccc gaactggaat atccgacgaa gaaattccag gagcttatgg
3101 ctaaaatcaa ggggttccag aaccagaagg tggagattgc cgccatgaac
3151 gctgagtcct caggatcagg cgtgacatcg ggcaactttg tgccaccaat
3201 agcaaccact ggtccatcag catacccgcc agctacggga acacatggca
3251 ctaacatcgg gccacaggac caaggaggtt ggggagggcg tatgcccaga
3301 agtagaatgc caggagggta tggtaggcct cagaggccat ggaccttgcc
3351 ttcagcgcag actgaaaacg gcgtcatgct gatcattccg gaggatttaa
3401 ccctcgcagc agatgctatc aacagatggg agtcaatcac catcaacgtc
3451 gtcagcaaac ttgccttcga caacatgcag gacaaagtcg actacgtcga
3501 gaacctgctg ggcgaacgag aaaaggaagt ttggaccact tggagaatga
3551 agtgggaaga cgagtaccgg cggatggttg ccatttcaga tgacaccaga
3601 aatctgaccg ccgcaatcaa aagggtgttt ggggtacatg acccattcac
3651 aggaagtacc ttcctacaaa accaggccta tgcggacttg gagaggttaa
3701 gctgcaaaag aatggaggac gtgatgccat tcctattcac gtactatcag
3751 ctggcagcaa aatccggtag gatgtggacg aacgaggagc tctccgacaa
3801 gctgtttcgg aagctaccag aggcagtagg ccccacaata gagaaagcct
3851 acaaagagcg ctacccaggg ttagtaattg gggtaatggc tcgaatcaac
3901 ttcatcatcg agtacctgca gaatgtgtgc aaacaagcag cattacagcg
3951 gagtttgaag aatctcaact tctgccgaac aatgccagtg ccagggtact
4001 acgagaagaa gaagtatgga gtgcgcaagt ccacaacgta caaaggtaaa
4051 ccacatgata ctcatgtgaa ggttatcaag aacaaggaca agaacgcacc
4101 agggcgcaag tgtaaatgct acctttgcgg catagaaggc cactacgcaa
4151 gggaatgccc taagaagacg gtacagccac agaggatggc gtacttcgaa
4201 ggcctcgctc tcgcagataa ttgggatgtt ctctctgtag acgtcgggga
4251 aagcgacagc gaaggagtct gctccatttc tgaaggagag acagcaggca
4301 ggatggatga gctagcagca ttcaaaactc agctccccta ccctgtagag
4351 ttcgaacatg gcatgttcgt tctcaccatt gagcaagtca ccgcccctgc
4401 agtagcctca ggatggcgca ggcgtacaga gctacgaggt gaccagaagg
4451 tgtgtccgca ccaatggagt gacgtcgccg aggtgtcact agaggacaga
4501 ttctgttctc tctgcggaga caatacgcca gtcggcagaa gggtacactg
4551 cacgacatgt aaggcaaacc tgtgcccagt atgcgcttgg ttggagtttg
4601 gcatcaaaat tgtagcagcc aaaaccgacg ccaccaagtg gaactacctg
4651 aataaggatg agttgatcgc tcagctatac gagcacaacg cgttccttac
4701 tcaccagaac aaagctctgc aagctagaat tgaggagttg acaaaaggcc
4751 gaaacaacga tctcattgat ctttgtgaag gtgatccaga cctcatggca
4801 gagatttgtg acgagctttt ccgcaagcca gctagcggag aaacctcgat
4851 tttgcggggg aaggagaggg taaaactcga aatcctggaa gaagaagtcc
4901 gtggatacag agaagagcaa gagctcagga cccccctaca aaaactttct
4951 gagggtgcat caacatctta caaggcacca gaggaaagtg atgaggaaag
5001 agtcggagca ctcttagctg aaggagaatt agagaagctc gctgctgtcg
5051 caggagaatc ctattctcgc atgcctaaag gtggcctaaa caagctgtac
5101 cacttaaacg tgcagtttgt catcccaaaa gctgagggtg gtcacataag
5151 cttcacagtc gcggccataa tcgacacagg gtgcacctgt tgctgtataa
5201 acggcgcgaa ggttcctaaa gaagctcaag aagaagcctc atatgcaatg
5251 acgttcgcag gcgtcaactc gagaggcaca accagaaaga agatgagggc
5301 gggaaaaatg gtcatcagtg ggaatgattt ctacaccccc tacatctcgg
5351 tctttgacat ggatctccca gacattgaca tgctgatagg atgtaacttc
5401 atcaaagcaa tgcaaggagg gatcaggttc gaaggcactg aagtcaccat
5451 ctacaagaag gtgaccacaa tccagacgac tctggagcct atcaaattgg
5501 gctatgcaga gttcgaccct gacatccagg tggagctaga aagggcatac
5551 tacgccgctc cagtgtcaga agcagagcta atcaagctca gggatcacag
5601 gctgctcgct gaattaaagg agcagggctt cataggcaac gacccaatgt
5651 tgcactgggc gaagaaccag gtcaagtgca agcttgacat catcaacccg
5701 gatatcacca tccagggcaa gccgcctagc acagccacac ctgagatcaa
5751 agaccgctac cagcgtcaca tagatgcact gctatccatt ggggtcatcc
5801 gaccaagcaa aagcaggcac cgaacagcgg cattcatcac ctactcgggc
5851 accagcgtgg acccgaagac aggggaagaa atcagaggca aagaaaggat
5901 ggtcttcgac tatcgcgctc tgaacaacaa cacgcacaag gaccagtaca
5951 cattgcctgg catcaactcg attgtagcag ctgttggcaa cgccaaaatc
6001 tacagcaagt tcgacttgaa ggctggtttc catcaggtcc taatggaaga
6051 atcctccatc ccttggacag cgttcatcac gccagtagga ttctacgaat
6101 ggttggtaat gccttttggt attgctaacg ctccagcggt tttccaaaga
6151 aaaatggata actgcttcca caagctgaga gagttcgtcg cggtctacat
6201 cgacgacatc ctcgtcttca gcaattccct gcaggaacat gaaagccatt
6251 tacggcaaat gcttgaggtt tgcaggaaga atgggttggt gctatcacca
6301 acaaaaatga aggttgctgt cacaacagtg gaattcctag gggccatcat
6351 cggcaatggg aaaatcaagt tgcagcctca catcgtcaag aagatttctg
6401 aagttgacga tgaatccctg agaaccctga aagggttaag aagctggttg
6451 ggcataatta actatgccag gaattacatt cctaactgtg ggaccttgct
6501 tggcccactc tacagcaaaa ctagcgaaaa tggggatcga agaatgagtc
6551 ctcaggactg gaagctggtc aggaaagtca aagagctcgt caagagtctg
6601 ccagacttag agctaccacc agcaggagcc tatgtggtca tcgaaacaga
6651 cggctgcatg gaaggatggg gaggagtgtg caaatggaag cacaggaaag
6701 gcgaatctgc ctcagcagag aaagtctgcg catatgcaag cggcaaattc
6751 ccggctatca agtccaccat cgatgctgag atgcatggag taatgaactc
6801 cctggagaaa ttccagatct acttcatgga caaaggtgag gtcaccatta
6851 gaacagactg ccaggccata gtagcgttct acgaaaagct caacgctaat
6901 aaaccttcaa gggttcgctg gctcaacttc tgtgactaca tcaccaatac
6951 aggagtcaag gtcgtcttcg agcacatcaa agggaaggac aacgtcctag
7001 cagacacgct cagccgactc acacagacct tagctgcggt tcgggagatg
7051 cccgcagaac aggaagagat cctcagacag gctctcaaca atactgaggt
7101 ccagcccaag gaacgaagga tcctcatgga tcacatctgt ggaatgctgg
7151 aagcccaggc ccaaaaggcc agtctccacc aacatgggct tagcccatga
7201 tctatctgat aatggaagct gacgcaccgg atgacttcac cataaatgat
7251 tcgtcatcgc ttacgccatc agctctatta ttactttact tttgtaagtg
7301 cgccagtagt gcgctgagtc agggaatctt atcccttatg tcttttagcc
7351 acactttcgg tggtagtgga tgcttttagt acaagcatta ttgtaaaagc
7401 taagcttttg agctgtcgat ggggcccaat gagcacccga gcttcaaaac
7451 cttatcttct actccctata taaggagtct taggaagaga gatcagatat
7501 cgaaaatcca tcatcgaaca cctttcatag aatatctttg atcaaatcaa
7551 taaacaaatc ttccgcaata ctctgttttc tttagttctt tactgttacc
7601 tagccagtca gtagagaaga tccacgaaaa tttttatttt ccgggaccat
7651 tc