Sequence of DPV Gooseberry vein banding associated virus
Gooseberry vein banding virus isolate BC, complete genome.
ACC No: HQ852250
Dated: 2011-08-17 | Length: 7649 | CRC: -1699743493
ID HQ852250; SV 1; linear; genomic DNA; STD; VRL; 7649 BP.
XX
AC HQ852250;
XX
DT 11-MAY-2011 (Rel. 108, Created)
DT 17-AUG-2011 (Rel. 109, Last updated, Version 2)
XX
DE Gooseberry vein banding virus isolate BC, complete genome.
XX
KW .
XX
OS Gooseberry vein banding virus
OC Viruses; Retro-transcribing viruses; Caulimoviridae; Badnavirus.
XX
RN [1]
RP 1-7649
RX DOI; 10.1007/s11262-011-0614-8.
RX PUBMED; 21533750.
RA Xu D., Mock R., Kinard G., Li R.;
RT "Molecular analysis of the complete genomic sequences of four isolates of
RT Gooseberry vein banding associated virus";
RL Virus Genes 43(1):130-137(2011).
XX
RN [2]
RP 1-7649
RA Xu D., Mock R.G., Kinard G.R., Li R.;
RT ;
RL Submitted (06-JAN-2011) to the INSDC.
RL National Germplasm Resources Laboratory, USDA-ARS, 10300 Baltimore Ave.,
RL Beltsville, MD 20705, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .7649
FT /organism="Gooseberry vein banding virus"
FT /host="Ribes nigrum"
FT /isolate="BC"
FT /mol_type="genomic DNA"
FT /country="Canada"
FT /db_xref="taxon:157270"
FT CDS 393. .1067
FT /codon_start=1
FT /product="unknown"
FT /note="ORF 1"
FT /protein_id="AEE39274.1"
FT /translation="MRKHTALEFEEKAEAWERTERAARHDFVFRNLKTYPRYDTNQRFP
FT SCEIPCYHYNTGAGTKVCHATISKEGGNQHFVLNSLFDLEVTQIHNQAVIHDCLTQFVQ
FT YSIYKRRKKLKKSRLPTIPEERPLATSEVSKVDPEQISQISSQLTAVKADLREIKSQQS
FT QLKTGFNQLRDSIQELLSRESEPKPIEAATAEVADQLKKQLKEVKAVLEDTKKIVRSLT
FT PE"
FT CDS 1068. .1511
FT /codon_start=1
FT /product="unknown"
FT /note="ORF 2"
FT /protein_id="AEE39275.1"
FT /translation="MSSWEDTSSKQIYKDALNATNTLYTNGIGEGFVKPAELTGGQVTV
FT KAIRQNNTLIELVVGISAKLDNAAAQLRSLDRRISELETAIRAKEAVSLPESIIDDLTK
FT EFAKLDAGTGRKAPKVGKKGKFFVWKDPKNDDQNPNRASTSRN"
FT CDS 1468. .7200
FT /codon_start=1
FT /product="polyprotein"
FT /note="ORF 3; contains MP/CP/aspartic protease/RTase/RNase
FT H"
FT /protein_id="AEE39276.1"
FT /translation="MTTRTRTEQVPRATSTRPSSRGEASSTLDDQIRGYRQAARLRHNV
FT RRRLRSLSPGGFRNTLEQQLSPDQELALSRRRRANLVPAEVLYTHNNNEVVNRVYQHYE
FT ERSAHVVDRQMDLRFIEEESYRRLVDEGLQFIHLGMGMVRIHMLHRNSAGIEAMIVFRD
FT TRWTDDRQVIASMSVDMTHGSQLVYVIPDAMLSIHDFYNHIQVSIQTRGYNGGWTGGDS
FT NMIVTRSLIGRLTNQSTTNFGYQIQGVTDYLTSHGVSCIPGEQWSVTNRSGEWRLQQSS
FT IAPPEQVPTEARLRPGPRGELSMRFTNFRDQTVRERASDEDTDSGRPETSGRDETTHYV
FT GALRFDLKGRSKPREEECFEVAAPDVLQSWMQQLSRSPPRQIRYEGPEWDTLGEPSGKY
FT DYKVRYSAPPPTPWPTKPTGWGDEEEDLPPPRFDSSSESFSGGGEIEPLEYHESSEDSY
FT EEVRRRDIENHNSLIAEGFTQEPRFPGLYAPARVEVIEEDHYEGDASERSWSEEEPEFD
FT YPQIAAVVNQNNEPELEYPTKKFQELMAKIKGFQNQKVEIAAMNAESSGSGVTSGNFVP
FT PIATTGPSVYPPATGTHGTNIGPQDQGGWGGRMPRSRMPGGYGRPQRPWTLPSAQTENG
FT VMLIIPEDLTLAADAINRWESITINVVSKLAFDNMQDKVDYVENLLGEREKEVWTTWRM
FT KWEDEYRRMVAISDDTRNLTAAIKRVFGVHDPFTGSTFLQNQAYADLERLSCKRMEDVM
FT PFLFTYYQLAAKSGRMWTNEELSDKLFRKLPEAVGPTIEKAYKERYPGLVIGVMARINF
FT IIEYLQNVCKQAALQRSLKNLNFCRTMPVPGYYEKKKYGVRKSTTYKGKPHDTHVKVIK
FT NKDKNAPGRKCKCYLCGIEGHYARECPKKTVQPQRMAYFEGLALADNWDVLSVDVGESD
FT SEGVCSISEGETAGRMDELAAFKTQLPYPVEFEQGMFVLTIEQVTAPAVASGWRRRTEL
FT RGDQMVCPHQWSDVAEVSLEDRFCSLCGDNTPVGRRVHCTTCKANLCPVCAWLEFGIRI
FT VAAKTDATKWNYLNKDELIAQLYEHNAFLTHQNKALQARIEELTKGRNNDLIDLCEGDP
FT DLMAEICDELFRKPASGETSILRGKERVKLEILEEEVRGYKEEQELRTPLQKLSEGAST
FT SYKAPEESDEERVGALLAEGELEKLAAVAGESYSRMPKGGLNKLYHLNVQFVIPKAEGG
FT HVSFTVAAIIDTGCTCCCINGAKVPEEAQEEASYAMTFAGVNSRGTTRKKMRAGKMVIS
FT GNDFYTPYISVFDMDLPDIDMLIGCNFIKAMQGGIRFEGTEVTIYKKVTTIQTTLEPIK
FT LGYAEFDPDIQVELERAYYAAPVSEAELIKLRDHRLLAELKEQGFIGNDPMLHWAKNQI
FT KCKLDIINPDITIQGKPPSTATPEIKDRYQRHIDALLSIGVIRPSKSRHRTAAFITYSG
FT TSVDPKTGEEIRGKERMVFDYRALNNNTHKDQYTLPGINSIVAAVGNAKIYSKFDLKAG
FT FHQVLMEESSIPWTAFITPVGFYEWLVMPFGIANAPAVFQRKMDNCFHKLREFVAVYID
FT DILVFSNSLQEHESHLRQMLEVCRKNGLVLSPTKMKVAVTTVEFLGAIIGNGKIKLQPH
FT IVKKISEVDDESLRTLKGLRSWLGIINYARNYIPNCGTLLGPLYSKTSENGDRRMSPQD
FT WKLVRKVKELVKSLPDLELPPAGAYVVIETDGCMEGWGGVCKWKHKKGESASAEKVCAY
FT ASGKFPAIKSTIDAEMHGVMNSLEKFQIYFMDKGEVTIRTDCQAIVAFYEKLNANKPSR
FT VRWLNFCDYITNTGVKVVFEHIKGKDNVLADTLSRLTQTLAAVREMPAEQEEILRQALN
FT NTEVQPKERRILMDHICGMLEAQAQKASLHQHGLDP"
XX
SQ Sequence 7649 BP; 2265 A; 1841 C; 2020 G; 1523 T; 0 other;
hq852250 Length: 7649 17-AUG-2011 Type: N Check: 2075 ..
1 tggtatcaga gcttcggctc tacgttagtc ttcatggcta gtttctaaat
51 tacctgagag gttgtgccat aaagcctaac ccgaggttca aacccagctg
101 aacgtcagac cttcggtctg aggttgtggt gttttccgac gattgtcata
151 gtccgaactc cggaaaagct ttctccttac ggtattataa ggaggttgct
201 gtttgaaacg ttaggagttg cagagttgca aaaggatcag gcagcccgag
251 agccgttagc cgtgggaggc gccgaggcga atagtggtgt ccctgatatg
301 agcaaggtga gcaacgagaa acgagtatct agagcagtag ccgacaccgg
351 ccggagaata gtaaagtaac gactcaagac gtgacagtct atatgcggaa
401 acacacagcc ttagaatttg aagagaaggc cgaagcttgg gagagaactg
451 aaagggcggc gaggcacgac ttcgttttta gaaacttgaa gacttacccc
501 cggtacgata ccaaccagag gtttcccagt tgtgagatcc cttgttatca
551 ttacaatact ggcgcgggaa cgaaagtttg ccacgcaaca atctccaaag
601 aaggcggaaa ccagcacttt gtgcttaaca gtctgtttga cttagaagtc
651 actcagatcc ataaccaagc agtcatccac gactgtttga ctcagttcgt
701 ccagtactcc atctacaaga gaaggaagaa actcaagaag agtagactcc
751 caacgatccc ggaggagcgg cctttggcta cctctgaggt ctcgaaggta
801 gatccggagc agatctccca gatctcatcg cagctcaccg ctgtgaaggc
851 agatctccga gagatcaaga gtcagcaatc ccagctcaag acgggattca
901 accagctgag agattccatt caggaattac tctccagaga atcggaaccc
951 aaaccgattg aagcagccac agctgaggtg gccgatcagc tcaagaagca
1001 gcttaaggaa gttaaggctg tgcttgagga caccaagaag atcgtcagat
1051 ctttgacccc ggagtagatg agcagctggg aagacacttc cagtaagcag
1101 atctacaagg acgcgttaaa cgcaacaaac acgctctaca ccaacggcat
1151 cggcgaggga ttcgtcaagc cagcagagct aacagggggt caggtcaccg
1201 taaaggcgat ccgacagaac aacacgctca tcgagctagt tgttgggata
1251 agtgcgaagc tagataacgc tgccgcacag ttaagaagcc tcgacaggag
1301 gatatcggag ctcgaaacag ccatccgggc aaaggaggct gtatccttgc
1351 ctgaaagcat catcgacgat ctcactaagg agttcgccaa acttgacgcc
1401 ggaacaggaa ggaaggctcc taaggtcggg aagaaaggca agttcttcgt
1451 gtggaaagac ccgaagaatg acgaccagaa cccgaacaga gcaagtacct
1501 cgcgcaacta gcacccgacc cagtagtcgt ggtgaggcgt cgtcaaccct
1551 agacgaccag atacgagggt acagacaggc cgccaggctt agacataacg
1601 tcaggcggag gttaaggagt ttatctcctg gtgggttcag gaacacgcta
1651 gagcagcagc ttagccctga tcaagagcta gcactaagca ggaggcgacg
1701 agcgaacctc gtgccagcag aagtgctcta cacccacaac aacaatgagg
1751 tagttaacag ggtctaccaa cactacgagg agcggagcgc gcacgtagtg
1801 gacagacaga tggaccttcg gttcatcgag gaagagtcct atcgcaggct
1851 agtcgatgag ggcttacagt tcattcacct tggcatgggg atggtaagga
1901 tccacatgtt gcacagaaac tcggccggga ttgaggccat gattgtcttc
1951 agagacacaa ggtggaccga cgacaggcag gtgatagcca gcatgtccgt
2001 cgacatgacg cacggatcac agttggtata tgtgattccg gatgcgatgc
2051 tctccatcca tgatttctac aatcatatcc aggtcagcat acagaccagg
2101 ggatacaatg gaggatggac gggtggtgac tctaacatga tagtcaccag
2151 gtcactgatt ggtaggttaa ccaaccagag cacgaccaat tttggttacc
2201 agatccaagg agtcacggac tacctcacaa gccatggagt ctcttgcatt
2251 ccaggagaac agtggagcgt aaccaacaga tcaggagagt ggcgattaca
2301 gcaatcatcc attgcgccac cggagcaggt ccctacggag gctaggctaa
2351 ggccaggacc tagaggtgaa ctcagcatga ggttcacgaa cttccgagac
2401 cagacggttc gggagagagc gtcggacgaa gataccgaca gtggtagacc
2451 agaaacaagt gggcgagatg aaacaacgca ctatgttggt gcgctgagat
2501 tcgatctcaa aggcaggtca aaaccacgag aagaggagtg cttcgaagta
2551 gcagctccag acgtgcttca aagctggatg caacagctat ccagaagtcc
2601 gccaaggcag attcgctacg aaggccctga atgggataca ctaggcgagc
2651 caagtggcaa gtatgactac aaggtcaggt actcagcacc accaccaaca
2701 ccgtggccaa ctaagccaac tggttggggg gatgaagaag aggatcttcc
2751 accaccaaga tttgactcat cgtcagaatc tttttcaggg gggggggaga
2801 tagaaccttt ggagtaccac gaaagtagcg aagacagcta tgaagaggtc
2851 agaaggcgtg atattgaaaa tcacaacagc ctcatagctg agggattcac
2901 ccaggaacct aggttcccag gcttatacgc gccagccagg gtagaagtga
2951 tcgaggaaga tcactatgaa ggcgacgcta gtgagcgaag ctggtctgag
3001 gaggagccgg aattcgacta tccccagata gcagcagtgg tgaaccaaaa
3051 caacgaaccc gaactggaat atccgacaaa gaaattccag gagcttatgg
3101 ctaaaatcaa ggggttccag aaccagaagg tggaaattgc cgccatgaac
3151 gctgagtcct cgggatcagg cgtaacatcg ggcaactttg tgccaccgat
3201 agcaaccact ggtccatcag tatacccgcc agctacggga acacacggca
3251 ctaacatcgg gccacaggac caaggaggtt ggggagggcg tatgcccaga
3301 agtagaatgc caggagggta tggtaggcct cagaggccat ggaccttgcc
3351 ttcagcgcag accgaaaacg gcgtcatgct gatcattccg gaggatttaa
3401 ccctcgcagc agatgctatc aacagatggg agtcaatcac catcaacgtc
3451 gtcagcaaac ttgccttcga caacatgcag gacaaagtcg actacgtcga
3501 aaacctgctg ggcgaacgag aaaaggaagt ttggaccact tggagaatga
3551 agtgggaaga cgagtaccgg cggatggttg ccatttcaga tgacaccaga
3601 aatctgaccg ccgcaatcaa aagggtgttt ggggtacatg acccattcac
3651 aggaagtacc ttcctacaaa accaggccta tgcggacttg gagaggttaa
3701 gctgcaaaag aatggaggac gtgatgccat ttctattcac gtactatcag
3751 ctggcagcga aatccggtag gatgtggaca aacgaggagc tctccgacaa
3801 gctgtttcgg aagctaccag aggcagtagg ccccacaata gagaaagcct
3851 acaaagagcg ctacccaggg ttagtaatcg gggtaatggc tcgaatcaac
3901 ttcataatcg agtacctgca aaacgtatgc aaacaagcag cattacagcg
3951 aagtctgaag aatctcaact tctgccgaac aatgccagtg ccagggtact
4001 acgagaagaa gaagtatgga gtgcgcaagt ccacaacgta caaaggtaaa
4051 ccacatgaca ctcatgtgaa ggttatcaag aacaaggaca agaacgcacc
4101 agggcgcaag tgtaaatgct acctttgcgg catagaaggc cattacgcaa
4151 gggaatgccc taagaagacg gtacagccac agaggatggc gtacttcgaa
4201 ggtctcgctc tcgcagataa ttgggatgtt ctctctgtag acgtcgggga
4251 aagcgacagc gaaggagtct gctccatttc tgaaggagag acagcaggca
4301 ggatggatga gctagcagcg ttcaaaactc agctccccta ccctgtagag
4351 ttcgaacaag gaatgttcgt tctcaccatt gagcaagtca ccgctcctgc
4401 agtagcctca ggatggcgca ggcgtacgga gctacgaggt gaccagatgg
4451 tgtgtccgca ccaatggagt gacgtcgccg aagtgtcact agaggacaga
4501 ttctgttctc tctgcggaga caatacgcca gtcggcagaa gggtacattg
4551 cacgacatgt aaggcaaacc tgtgcccagt ttgcgcttgg ttggagtttg
4601 gcatcagaat tgtagcagcc aaaaccgacg ccaccaagtg gaactacctg
4651 aataaggatg agttgatcgc tcagctgtac gagcacaacg cattccttac
4701 tcaccagaac aaagctctgc aagctagaat tgaggagttg acaaaaggcc
4751 gaaacaatga tctcatcgat ctttgtgaag gtgatccaga cctcatggca
4801 gagatttgtg acgagctttt ccgcaagcca gctagcggag aaacctcgat
4851 tttgcggggg aaggagaggg taaaactcga aatcctggaa gaagaagtcc
4901 gaggatacaa agaagagcaa gagctcagga cccccctaca aaaactttct
4951 gagggtgcat caacatctta caaggcacca gaagaaagcg atgaggaaag
5001 agtcggagca ctcttagctg aaggagaatt agagaaactc gctgccgttg
5051 caggagaatc ctattctcgc atgcctaaag gtggcctaaa caagctgtac
5101 cacttaaatg tgcagtttgt catccccaaa gctgagggtg gtcacgttag
5151 cttcacagtc gcggccataa ttgatacagg gtgcacctgt tgctgtataa
5201 acggcgcgaa agttccagaa gaagctcaag aggaagcctc atatgcaatg
5251 acgttcgcgg gcgtcaactc gagaggcaca accagaaaga agatgagggc
5301 gggaaaaatg gtcatcagtg ggaatgattt ctacaccccc tacatctccg
5351 tctttgacat ggatctccca gacattgaca tgctgatagg atgtaacttc
5401 atcaaagcaa tgcaaggagg gatcaggttc gaaggcactg aagtcaccat
5451 ctacaagaag gtgaccacaa tccagacgac tctggagcct atcaaattgg
5501 gctatgcaga gttcgaccct gacatccagg tggagctaga aagggcttac
5551 tacgccgctc cagtgtcaga agcagagcta atcaagctca gggatcacag
5601 gctgctcgct gaattaaagg agcagggctt cataggcaac gacccaatgt
5651 tgcactgggc aaagaaccag atcaagtgca agcttgacat catcaacccg
5701 gatatcacta tccagggtaa accgcccagc acagccacac ctgagatcaa
5751 agaccgctac cagcgtcaca tagatgcact gctatccatt ggggtcatcc
5801 gaccaagcaa aagcaggcat agaacagcgg cattcatcac ctactcgggc
5851 actagcgtgg acccgaagac aggggaagaa atcagaggca aagaaaggat
5901 ggtcttcgac tatcgcgctc tgaacaacaa cacgcacaag gaccagtaca
5951 cattgcctgg catcaactcg attgtagcag ctgttggcaa cgccaaaatc
6001 tacagcaagt tcgacttgaa ggctggtttc catcaggtcc taatggaaga
6051 atcctccatc ccttggacag cgttcatcac gccagtagga ttctacgaat
6101 ggttggtaat gcctttcggt attgctaacg ctccagcggt tttccagagg
6151 aaaatggata actgcttcca caagctgaga gagttcgtcg cggtttacat
6201 cgacgacatc ctcgtcttca gcaattccct gcaggaacat gagagccatt
6251 tacggcaaat gctggaagtt tgcaggaaga atgggttggt gctgtcacca
6301 acaaaaatga aggttgctgt cacaacagtg gaattcctag gggccatcat
6351 cggcaatggg aaaatcaagt tgcagcctca catcgtcaag aagatttccg
6401 aagttgacga tgaatccctg agaaccctga aagggttaag gagctggttg
6451 ggcataatta actatgccag gaattacatt cctaactgtg ggaccctgct
6501 tggcccactt tacagcaaaa ctagcgaaaa tggggatcga agaatgagtc
6551 ctcaggactg gaagctggtc aggaaggtca aagagctcgt caaaagtctg
6601 ccagacttag agctaccacc agcaggagcc tatgtggtca tcgaaacaga
6651 cggctgcatg gaaggatggg gaggagtgtg caaatggaag cacaagaaag
6701 gagaatctgc ctcagcagag aaagtctgcg catatgcaag cggcaaattc
6751 ccggctatca aatccaccat cgatgctgag atgcatggag taatgaactc
6801 cctggagaaa ttccagattt acttcatgga caaaggtgag gtcaccatca
6851 gaacagactg ccaggccata gtagcgttct acgaaaagct caacgctaac
6901 aaaccatcaa gggttcgctg gctcaacttc tgtgactaca tcaccaatac
6951 aggagtcaag gtcgtcttcg agcacatcaa agggaaggac aacgtcctag
7001 cagacacgct cagccgactc acacagacct tagctgcggt tcgggagatg
7051 cccgcagaac aggaagagat cctcagacag gctctcaaca atactgaggt
7101 ccagcccaag gaacgaagga tcctcatgga tcacatctgt ggaatgctgg
7151 aagcccaggc ccaaaaggcc agtctccacc aacatgggct tgacccatga
7201 tctatctgat aatggaagct gacgcaccgg atgacttcac cataaatgat
7251 tcgtcaccgc ttacgccatc agctctatta ttattttact tttgtaagtg
7301 cgcctgtagt gcgctgagtc agggaatctt atcccttatg tcctttagcc
7351 acactttcgg tggtagtgga tgcttttagt acaagcatta ttgtaaaagc
7401 taagcttttg agctgtcgat ggggcccaat gagcacccga gcttcaaaac
7451 cttatcttct actccctata tatggagtct taggtagatc gaaaataatc
7501 atcgaatagc tttcatcgaa tatctttcct tgtaagcatt attcctcaat
7551 aaacaaatct tccgcaatac tctgtttcct tagttcttta ctgttaccta
7601 gccagtcagt agagaagatc cacgaaaatt ttattttccg ggaccattc