Sequence of DPV Garlic virus X

Garlic virus X isolate 254-GVX2 coat protein gene, complete cds.

ACC No: HQ873813

Dated: 2013-02-15 | Length: 732 | CRC: -1888034583

                
ID   HQ873813; SV 1; linear; genomic RNA; STD; VRL; 732 BP.
XX
AC   HQ873813;
XX
DT   14-OCT-2011 (Rel. 110, Created)
DT   15-FEB-2013 (Rel. 115, Last updated, Version 3)
XX
DE   Garlic virus X isolate 254-GVX2 coat protein gene, complete cds.
XX
KW   .
XX
OS   Garlic virus X
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales;
OC   Alphaflexiviridae; Allexivirus.
XX
RN   [1]
RP   1-732
RA   Parrano L., Afunian M., Pagliaccia D., Douhan G., Vidalakis G.;
RT   "Characterization of viruses associated with garlic plants propagated from
RT   different reproductive tissues from Italy and other geographic regions";
RL   Phytopathol. Mediterr. 51(3):549-565(2012).
XX
RN   [2]
RP   1-732
RA   Afunian M., Parrano L., Pagliaccia D., Douhan G., Vidalakis G.;
RT   ;
RL   Submitted (12-JAN-2011) to the INSDC.
RL   Department of Plant Pathology and Microbiology, University of California,
RL   Riverside, Riverside, CA 92521, USA
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .732
FT                   /organism="Garlic virus X"
FT                   /host="Allium sativum (garlic) cv. Rosso di Sulmona"
FT                   /isolate="254-GVX2"
FT                   /mol_type="genomic RNA"
FT                   /country="Italy"
FT                   /collection_date="2008"
FT                   /db_xref="taxon:150284"
FT   CDS             1. .732
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:E0X582"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="UniProtKB/TrEMBL:E0X582"
FT                   /protein_id="AEP81399.1"
FT                   /translation="MGDRNQGINPNQGLNAQAQGDGTSNQSQRPNRNPTPRPQADLNAQ
FT                   NNVMPSENDLAAIASDVTSNSVATQETIREILSTLQARRPNATPKDLFSLAWACYHNGS
FT                   SRFTTMTTDAPCGMPHAELKDLVEDYCTLRQFCGYYAKTCYVTGKQQNKPPANWSRKGF
FT                   QDESKFAAFDFFNAVMSDSSPTPPGGMRFKPTHEEIVGHSMNAKMSIIESRKASNMVST
FT                   RADLLAQQQIHEAPKPLMLTF"
XX
SQ   Sequence 732 BP; 222 A; 201 C; 152 G; 157 T; 0 other;

hq873813 Length: 732  15-FEB-2013  Type: N  Check: 9783  ..

       1  atgggcgatc ggaaccaagg aataaatccc aaccagggac tcaatgccca
      51  agcgcaaggt gatggaacaa gcaatcaaag tcaacgccct aataggaatc
     101  caactcctcg accccaagct gacttaaacg cccagaacaa tgtcatgcct
     151  tctgaaaatg acttagcagc gatagcaagt gatgtaactt ccaactcagt
     201  agccacacag gaaactatcc gcgaaatcct cagtaccctt caagcaaggc
     251  gacccaatgc gacacccaaa gacttatttt cgcttgcatg ggcatgctac
     301  cacaatggat catcacgatt cacgacaatg actactgacg ccccttgcgg
     351  catgcctcac gcggagctca aagacctcgt tgaagattac tgtacgctga
     401  gacaattttg tggttactac gccaaaacat gctacgtcac cgggaagcag
     451  caaaataagc caccagccaa ctggtctcga aaaggtttcc aagatgagtc
     501  aaaattcgct gcctttgatt tcttcaatgc tgtaatgagc gattcgtctc
     551  caacaccacc tggtggtatg cgatttaaac caacacatga ggagattgtg
     601  ggacactcca tgaatgcgaa gatgtccatc attgagtcgc gtaaagcctc
     651  gaatatggtt tccactcgcg ctgatctgtt ggcccaacag caaatccatg
     701  aagctccgaa accccttatg ctcacattct ga