Sequence of DPV Sida golden yellow vein virus
Sida golden yellow vein virus-Malvastrum [CU:Camaguey 177:09] segment DNA-A, complete sequence.
ACC No: HQ896203
Dated: 2012-02-24 | Length: 2609 | CRC: -2094364139
ID HQ896203; SV 1; circular; genomic DNA; STD; VRL; 2609 BP.
XX
AC HQ896203;
XX
DT 26-APR-2011 (Rel. 108, Created)
DT 24-FEB-2012 (Rel. 111, Last updated, Version 3)
XX
DE Sida golden yellow vein virus-Malvastrum [CU:Camaguey 177:09] segment
DE DNA-A, complete sequence.
XX
KW .
XX
OS Sida golden yellow vein virus-Malvastrum [CU:Camaguey 177:09]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN [1]
RP 1-2609
RX PUBMED; 21964921.
RA Fiallo-Olive E., Navas-Castillo J., Moriones E., Martinez-Zubiaur Y.;
RT "Begomoviruses infecting weeds in Cuba: increased host range and a novel
RT virus infecting Sida rhombifolia";
RL Arch. Virol. 157(1):141-146(2012).
XX
RN [2]
RP 1-2609
RA Fiallo-Olive E., Martinez-Zubiaur Y., Moriones E., Navas-Castillo J.;
RT ;
RL Submitted (17-JAN-2011) to the INSDC.
RL Departamento de Proteccion de Plantas, Centro Nacional de Sanidad
RL Agropecuaria, Carretera de Tapaste y Autopista Nacional, San Jose de las
RL Lajas, La Habana 32700, Cuba
XX
FH Key Location/Qualifiers
FH
FT source 1. .2609
FT /organism="Sida golden yellow vein virus-Malvastrum
FT [CU:Camaguey 177:09]"
FT /segment="DNA-A"
FT /host="Malvastrum coromandelianum"
FT /isolate="177"
FT /mol_type="genomic DNA"
FT /country="Cuba"
FT /collected_by="E. Fiallo-Olive"
FT /collection_date="May-2009"
FT /clone="177E"
FT /db_xref="taxon:1003172"
FT gene 184. .939
FT /gene="AV1"
FT CDS 184. .939
FT /codon_start=1
FT /gene="AV1"
FT /product="coat protein"
FT /db_xref="GOA:F5BH40"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:F5BH40"
FT /protein_id="AEC03072.1"
FT /translation="MTKRDSSWRSIAGTSKVRRTLNFSPRGGGGPKQTRASEWVNRPMY
FT RKPLIYRTLKTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRF
FT CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMYDNEPSTATI
FT KNDLRDRYQVMHRFYGKVTGGQYASNEQALVRRFWKINNHVVYNHQEAGKYENHTENAL
FT LLYMACTHASNPVYATLKIRIYFYDSITN"
FT gene complement(936. .1334)
FT /gene="AC3"
FT CDS complement(936. .1334)
FT /codon_start=1
FT /gene="AC3"
FT /product="replication enhancement protein"
FT /db_xref="GOA:F5BH41"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:F5BH41"
FT /protein_id="AEC03073.1"
FT /translation="MDSRTGELITARQAENGVYTWEIENPLYFKIDRVEELLFTRTRVY
FT HIQIRFNHNLRKALGLHKAYLNFQVWTTSMTASGLTYLLRFRQLVNMYLDQLGVIGINN
FT VIRAVRFATDNAHVRYVLEQHEIKFKFY"
FT gene complement(1081. .1470)
FT /gene="AC2"
FT CDS complement(1081. .1470)
FT /codon_start=1
FT /gene="AC2"
FT /product="transactivator protein"
FT /db_xref="GOA:F5BH42"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:F5BH42"
FT /protein_id="AEC03074.1"
FT /translation="MLSSSPSQPPCIKKAHRQAKRRAIRRRRIDLECGCSIYFHIGCTG
FT HGFTHRGTHHCTSGREWRIYLGNRKSPVFQDRQSRGTAVHQDQSVPHPDTIQPQPEESV
FT GSPQSLPELPSLDDIDDSFWVNLFT"
FT gene complement(1382. .2467)
FT /gene="AC1"
FT CDS complement(1382. .2467)
FT /codon_start=1
FT /gene="AC1"
FT /product="replication associated protein"
FT /db_xref="GOA:F5BH43"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="InterPro:IPR022690"
FT /db_xref="InterPro:IPR022692"
FT /db_xref="UniProtKB/TrEMBL:F5BH43"
FT /protein_id="AEC03075.1"
FT /translation="MPSIKRFKINAKNYFITYPDCSLNKEEALSQLLNLSTPVNKKFIK
FT ICRELHQNGKPHLHVLMQFEGKYACKNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYI
FT AKDGDTLEWGEFQIDGRSARGGCQSANDSYAKALNADSVDSAMAVLKEEQPKDFVLQNH
FT NIRSNLERIFAKAPEPWTPPFPLSSFTAVPDEMQAWVDGYFGTDPAARPERPVSIIVEG
FT DSRTGKTMWARALGPHNYLSGHLDFNSRVFSNQVEYNVIDDVAPHYLKLKHWKELLGAQ
FT KDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLDKEENSALRNWTNKNVIFITLT
FT APLYQKGTQASQKEGNQETQD"
FT gene complement(2053. .2310)
FT /gene="AC4"
FT CDS complement(2053. .2310)
FT /codon_start=1
FT /gene="AC4"
FT /product="AC4 protein"
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:F5BH44"
FT /protein_id="AEC03076.1"
FT /translation="MGSLISMCSCNSRENMHARITDSSTWYPQPGQHISIQTYRELNPA
FT PTSSPTSQRTEIRWNGENSRSTAEVLEEAANLLMIHMPRR"
XX
SQ Sequence 2609 BP; 631 A; 592 C; 608 G; 778 T; 0 other;
hq896203 Length: 2609 24-FEB-2012 Type: N Check: 7775 ..
1 accggatggc cgcgcgattt tttgcccttt tgcttttcac gcgcgccccg
51 cttttctcac tcgcgctatc gtccaatcat attgcgcctg ccgcgcttaa
101 ttatttcaaa caacttgggc tctaagttgt tgttgggcct atttatgaag
151 cgattggatt tgggccatac aatttaattc aaaatgacta agcgcgattc
201 gtcttggcgc tctattgctg gaacctcaaa ggttcgtcgc acgttgaatt
251 tctccccacg tggaggtggt ggcccaaaac agacacgggc ctctgaatgg
301 gttaacaggc ctatgtacag gaagcccttg atctaccgga ctttaaagac
351 gcccgatgtt ccaagaggtt gtgaaggccc gtgcaaggtc cagtcctatg
401 aacagcgtca tgatatctcc cacgtcggca aggtgatgtg tatttctgat
451 gtcactcgtg gtaatggcat tacccaccgt gtgggtaagc gtttttgtgt
501 taagtctgtg tacattttag ggaagatatg gatggatgag aacatcaaac
551 tgaagaacca cacgaacagt gtcatgttct ggttggtcag ggaccgtcga
601 ccctatggca ctccaatgga ctttggccaa gtgttcaata tgtatgacaa
651 cgagcctagc actgctacga ttaagaacga tctcagggat cgttaccagg
701 ttatgcacag gttctatggc aaagtcactg gtggacaata tgccagcaac
751 gagcaagctt tggtcaggcg attttggaag atcaacaacc atgtggtcta
801 caaccaccaa gaggctggca agtacgagaa tcacactgag aacgctctgt
851 tattgtacat ggcatgtact catgcctcta accctgtgta tgctacattg
901 aaaattcgaa tctattttta cgattcgata acgaattaat aaaatttaaa
951 ttttatttca tgctgttcaa gtacatatct tacatgcgca ttgtctgttg
1001 caaatcgaac agctctgatt acattgttaa tcccaattac acctaattgg
1051 tctaagtaca tattgactaa ctgtctaaac ctaagtaaat aagttaaccc
1101 agaagctgtc atcgatgtcg tccagacttg gaagttcagg taggctttgt
1151 ggagacccaa cgctttcctc aggttgtggt tgaatcgtat ctggatgtgg
1201 tacactctgg tcctggtgaa cagcagttcc tctactctgt ctatcttgaa
1251 atacagggga ttttctattt cccaggtata tacgccattc tctgcctgac
1301 gtgcagtgat gagttcccct gtgcgtgaat ccatgtcctg tgcagccgat
1351 gtggaagtaa atggagcacc cgcactctag atcaatcctg cgtctcctga
1401 ttgccctcct tttggcttgc ctgtgtgcct ttttgataca agggggctgt
1451 gagggtgatg aagataacat tcttatttgt ccagttcctg agagctgagt
1501 tttcctcttt gtccaggaaa tctttatagc tggcaccctc accaggattg
1551 caaagcacga ttgatgggat cccgccttta atttgaactg gcttgccgta
1601 tttgcaattt gactgccagt ctttctgggc ccccaacagt tctttccagt
1651 gctttagctt tagatagtgc ggtgcgacgt catcgatgac gttatattcc
1701 acttggttgg aaaagactct tgagttgaag tccaggtgtc cactgaggta
1751 attatgtggg cctaacgcac gagcccacat cgtcttccct gtcctcgagt
1801 caccttcgac tatgatactc actggtcttt ccggccgcgc agcgggatcc
1851 gttccaaaat aaccgtctac ccatgcttgc atctcgtcag gaacggctgt
1901 gaaagaggag aggggaaacg gaggagtcca tggttccgga gccttagcga
1951 atatcctttc taagttggaa cggatgttat gattctgcaa aacgaaatct
2001 tttggctgtt cttctttcaa aaccgccatg gcagaatcaa cagaatctgc
2051 gtttaacgcc ttggcatatg aatcattagc agattggcag cctcctctag
2101 cacttctgcc gtcgatctgg aattctcccc attccagcgt atctccgtcc
2151 tttgcgatgt aggacttgac gtcggagctg gatttagctc cctgtatgtt
2201 tggatggaaa tgtgctgacc tggttgggga taccaagtcg aagaatctgt
2251 tattcttgca tgcatatttt ccctcgaatt gcatgagcac atggagatga
2301 ggcttcccat tctgatggag ctctctgcaa attttgatga acttcttgtt
2351 cactggcgtg gaaagattta gtaattggga aagtgcctct tctttgttta
2401 aagagcagtc tggataagtg ataaaatagt ttttggcatt tattttaaaa
2451 cgtttaatcg atggcatttt tgtaataata agggggtcac cgattgaggc
2501 tctctcaaac ttgctctagc aattggggaa cggggtctca tttatactag
2551 aaccctcaat agaagtttca atctcgttca cacacgtggc ggccatccgc
2601 tataatatt