Sequence of DPV Jatropha mosaic India virus
Jatropha mosaic India virus isolate Aligarh coat protein (AV1) gene, partial cds; replication enhancer protein (AC3) and transcriptional activator protein (AC2) genes, complete cds; and replication-associated protein (AC1) gene, partial cds.
ACC No: HQ910408
Dated: 2013-04-05 | Length: 1177 | CRC: -1384869984
ID HQ910408; SV 1; linear; genomic DNA; STD; VRL; 1177 BP.
XX
AC HQ910408;
XX
DT 31-MAY-2011 (Rel. 109, Created)
DT 05-APR-2013 (Rel. 116, Last updated, Version 3)
XX
DE Jatropha mosaic India virus isolate Aligarh coat protein (AV1) gene,
DE partial cds; replication enhancer protein (AC3) and transcriptional
DE activator protein (AC2) genes, complete cds; and replication-associated
DE protein (AC1) gene, partial cds.
XX
KW .
XX
OS Jatropha mosaic India virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
XX
RN [1]
RP 1-1177
RA Baghel G., Naqvi Q.A., Snehi S.K., Raj S.K.;
RT "Molecular identification of three isolates of Jatropha mosaic India virus
RT associated with mosaic disease of Withania somnifera in India";
RL Arch. Phytopathol. Pflanzenschutz 45(17):2114-2119(2012).
XX
RN [2]
RP 1-1177
RA Baghel G., Naqvi Q.A., Afreen B., Snehi S.K., Raj S.K., Khan M.S.;
RT ;
RL Submitted (20-JAN-2011) to the INSDC.
RL Plant Molecular Virology, National Botanical Research Institute, Rana
RL Pratap Marg, Lucknow, U.P. 226001, India
XX
FH Key Location/Qualifiers
FH
FT source 1. .1177
FT /organism="Jatropha mosaic India virus"
FT /segment="DNA-A"
FT /host="Withania somnifera"
FT /isolate="Aligarh"
FT /mol_type="genomic DNA"
FT /country="India:Aligarh, AMU Campus"
FT /collected_by="G. Baghel"
FT /collection_date="Oct-2009"
FT /db_xref="taxon:1034067"
FT gene <1. .357
FT /gene="AV1"
FT CDS <1. .357
FT /codon_start=1
FT /gene="AV1"
FT /product="coat protein"
FT /db_xref="GOA:F6LD17"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:F6LD17"
FT /protein_id="AEF65957.1"
FT /translation="LVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNMYRDRYQVLRKWS
FT STVTGGQYASKEQAIVRRFFRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNDVDA
FT TLKIRIYFYDSVSN"
FT gene complement(354. .758)
FT /gene="AC3"
FT CDS complement(354. .758)
FT /codon_start=1
FT /gene="AC3"
FT /product="replication enhancer protein"
FT /note="involved in encapsidation of virion"
FT /db_xref="GOA:F6LD18"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:F6LD18"
FT /protein_id="AEF65958.1"
FT /translation="MDSRTGELITAAQAMNGVYTWEVPNPLYFKIIDHSSRPFLMEHDI
FT ITVQIRSNHNLRKALGLHQCWMDFKIWTTLRPQTLRFLRVFRYQVLRYLDMLGVICINT
FT VVRAVEHVLYSVLTGTDSIEQSNLIKFKIY"
FT gene complement(499. .906)
FT /gene="AC2"
FT CDS complement(499. .906)
FT /codon_start=1
FT /gene="AC2"
FT /product="transcriptional activator protein"
FT /db_xref="GOA:F6LD19"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:F6LD19"
FT /protein_id="AEF65959.1"
FT /translation="MRPSSPSTGHSTPVPIKVQHRAPKRRAIRQRKVNLNCGCSYYVHI
FT NCHNHGFTHRGTHHCSSGDEWRLYLGGSKSPLFQDHRPQQPAVPDGTRHNNRPDTVQPQ
FT PEESVGTTSMLDGFQNLDDLTASDLAFLEGF"
FT gene complement(836. .>1177)
FT /gene="AC1"
FT CDS complement(836. .>1177)
FT /codon_start=1
FT /gene="AC1"
FT /product="replication-associated protein"
FT /db_xref="GOA:F6LD20"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="UniProtKB/TrEMBL:F6LD20"
FT /protein_id="AEF65960.1"
FT /translation="LCGHLDLIPRVYKTNAGYNVIDDVNPHYLKHFREFMGAQRDWQSN
FT TKYGKPFQIKGGIPTIFLCNPGPISSYKNFLDNPKNTALKAWAIKNATFISLDGPLYSS
FT ANQGSTQGT"
XX
SQ Sequence 1177 BP; 287 A; 251 C; 300 G; 339 T; 0 other;
hq910408 Length: 1177 05-APR-2013 Type: N Check: 7006 ..
1 ctcgtcaggg atcgtaggcc cgtggacaaa ccccaggatt ttggtgaggt
51 gttcaacatg ttcgataacg agcccagtac tgctacggtt aaaaacatgt
101 accgtgatcg gtaccaggtg ttaaggaagt ggagttccac tgtcactggt
151 ggtcagtatg cgagcaaaga gcaggcaata gttaggcgtt tttttagggt
201 taataattat gttgtgtata atcagcaaga ggctggtaag tacgaaaacc
251 atacggagaa tgcattgatg ctgtacatgg cgtgtactca cgcctctaac
301 gacgtagatg ctacgcttaa gatacggatc tacttctacg attcagtatc
351 caattaataa attttaaatt ttattaaatt tgactgctca atactgtcag
401 tccctgtgag tacactgtac aatacatgct ctacggctct aacgaccgta
451 tttatacata tgacccctaa catgtccagg tatctgagta cctggtacct
501 aaaaaccctc aagaaacgca aggtctgagg ccgtaaggtc gtccagattt
551 tgaaatccat ccagcattga tgtagtccca acgctttcct caggttgtgg
601 ttggaccgta tctggacggt tattatgtcg tgttccatca ggaacggccg
651 gctgctgtgg tctatgatct tgaaatagag gggatttgga acctcccagg
701 tatagacgcc attcatcgcc tgagctgcag tgatgagttc ccctgtgcgt
751 gaatccatgg ttgtggcagt tgatgtgcac gtagtacgag cacccgcagt
801 tgaggtttac tttccgttgc cggatggccc tacgcttagg tgccctgtgt
851 tgaaccttga ttggcactgg agtagagtgg cccgtcgagg gagatgaagg
901 tcgcattttt tattgcccaa gccttcaaag ccgtattttt tgggttgtca
951 aggaaatttt tatagctgga aatgggccca ggattgcaca ggaagatagt
1001 gggtatccca cctttaattt gaaatggctt tccgtatttg gtgttgcttt
1051 gccagtccct ttgggccccc atgaattccc tgaagtgctt taggtagtgg
1101 ggatttacgt catcaatgac gttgtacccc gcgttggttt tgtagaccct
1151 aggaatcaag tccagatggc cacatag