Sequence of DPV Varroa destructor Macula-like virus

Varroa destructor Macula-like virus RNA-dependent RNA polymerase (RdRp) gene, partial cds; and coat protein (CP) and P15 (P15) genes, complete cds.

ACC No: HQ916350

Dated: 2011-04-20 | Length: 1388 | CRC: 1644597643

                
ID   HQ916350; SV 1; linear; genomic RNA; STD; VRL; 1388 BP.
XX
AC   HQ916350;
XX
DT   20-APR-2011 (Rel. 108, Created)
DT   20-APR-2011 (Rel. 108, Last updated, Version 1)
XX
DE   Varroa destructor Macula-like virus RNA-dependent RNA polymerase (RdRp)
DE   gene, partial cds; and coat protein (CP) and P15 (P15) genes, complete cds.
XX
KW   .
XX
OS   Varroa destructor Macula-like virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales;
OC   Tymoviridae; unclassified Tymoviridae.
XX
RN   [1]
RP   1-1388
RA   de Miranda J.R., Tournaire M., Cornman S., Haddad N., Evans J.D.,
RA   Gauthier L.;
RT   "A novel Macula-like virus of Varroa destructor mites and honey bees (Apis
RT   mellifera): prevalence, distribution and initial characterisation";
RL   Unpublished.
XX
RN   [2]
RP   1-1388
RA   de Miranda J.R., Gauthier L.;
RT   ;
RL   Submitted (21-JAN-2011) to the EMBL/GenBank/DDBJ databases.
RL   Ecology, Swedish University of Agricultural Sciences, Ullsvag 16-18,
RL   Uppsala 750 07, Sweden
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1388
FT                   /organism="Varroa destructor Macula-like virus"
FT                   /strain="Europe"
FT                   /mol_type="genomic RNA"
FT                   /country="France"
FT                   /collection_date="2002"
FT                   /db_xref="taxon:1005993"
FT   gene            <1. .582
FT                   /gene="RdRp"
FT   CDS             <1. .582
FT                   /codon_start=1
FT                   /gene="RdRp"
FT                   /product="RNA-dependent RNA polymerase"
FT                   /protein_id="AEB71855.1"
FT                   /translation="VSGDDSAIFPPPSDNPRWKVIEPLIALRFKIQIDRYPLFCGYYLG
FT                   PAGACRDPLVLFAKFAIAYDANELELKMPSYIAEFSIGHLLGDAVSSLLPPSHILFYSA
FT                   VFDLICRRATVDQKTILNIHTAPEHRLLRFLQRARYFTYAAARILQAALGVTPIVNASG
FT                   DLPLEPTAEGELLLPGHDGTLARGTRSAAH"
FT   gene            542. .1219
FT                   /gene="CP"
FT   CDS             542. .1219
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /note="capsid protein"
FT                   /protein_id="AEB71856.1"
FT                   /translation="MELLLEALAPLLTKTASSLTAPSPTPSTEPSANTELKPAAPQSNA
FT                   IVASTARIPATPSLVATPLSRDPSLKIPFQFALGRVSSADDKGIDYVFSSIPQFTKLVA
FT                   PYRRARLCSLEAVLEPLAPLSNGYSIILCWTQANNVVVGADSLAVPGAQLFSATKYAVL
FT                   TQSQVLPAPLHALNPMVKDSVTYTDSPRLHIAPFKLDDPGAALLVLRGVLEVSSPALVA
FT                   NTT"
FT   gene            918. .1328
FT                   /gene="P15"
FT   CDS             918. .1328
FT                   /codon_start=1
FT                   /gene="P15"
FT                   /product="P15"
FT                   /protein_id="AEB71857.1"
FT                   /translation="MATPSSSAGLRLTTSLLALILLLSPAPSSSQRPSTPFSPSPKFSQ
FT                   LLSTPLTQWSRIPLPIPTLQDCTSPPSNWTTRELPCSFSEASLKSLLRLLLPILHDHGY
FT                   IPKSCRTCFNYWGLPPIPNLNTLTFPDATGNV"
XX
SQ   Sequence 1388 BP; 273 A; 509 C; 271 G; 335 T; 0 other;

hq916350 Length: 1388  20-APR-2011  Type: N  Check: 6337  ..

       1  gtcagcggcg atgactccgc cattttcccg cccccgtctg acaacccaag
      51  gtggaaggtc atcgagccac ttatagccct gcgcttcaaa atacagatcg
     101  atcgttaccc gctcttctgc ggatactatc tcgggccggc aggggcttgt
     151  cgtgacccac tcgtcctttt cgccaaattc gctatcgcat atgacgcaaa
     201  cgagcttgaa ctcaagatgc cctcctacat agctgaattc tctatcggcc
     251  acttgctcgg ggatgccgtc tcctcacttc ttccgccctc ccacatcctt
     301  ttttactcag ctgtcttcga cctcatctgc cgccgcgcga cggtcgacca
     351  gaagacaatc ttaaacatcc atacagctcc ggagcaccgc cttctccgct
     401  tcctccaacg cgcccgttac ttcacttacg cagcagcccg tatactccaa
     451  gcggctctcg gcgtcactcc catcgtcaac gcttcaggcg atctcccgct
     501  ggagccaacg gcagagggtg aattgcttct ccctggccac gatggaactc
     551  ttgctcgagg cactcgctcc gctgctcact aagaccgcat cctcactcac
     601  cgctcccagc cccactccat caaccgaacc ctccgctaac actgaactta
     651  aaccagccgc tcctcaatct aatgctatcg ttgcgagtac tgctcgcatt
     701  cctgctactc cttctctggt cgctactcct ctatctcgtg accctagcct
     751  taagatccct tttcagttcg ctcttggcag ggtctcctcc gccgacgaca
     801  aaggcatcga ctacgtcttc tccagcattc cccagttcac aaagctcgtc
     851  gctccttacc gacgtgcccg tctctgctct cttgaggccg tgctcgagcc
     901  cctcgcgccc ctaagtaatg gctactccat catcctctgc tggactcagg
     951  ctaacaacgt cgttgttggc gctgattctc ttgctgtccc cggcgcccag
    1001  ctcttctcag cgaccaagta cgccgttctc acccagtccc aagttctccc
    1051  agctcctctc cacgccctta acccaatggt caaggattcc gttacctata
    1101  ccgactctcc aagattgcac atcgccccct tcaaactgga cgacccggga
    1151  gctgccctgc tcgttctccg aggcgtcctt gaagtctctt ctccggctct
    1201  tgttgccaat actacatgat cacggctaca tcccaaaatc atgccgcacc
    1251  tgcttcaatt attggggcct cccccccatc ccaaacctta ataccctcac
    1301  attccccgat gccacgggaa atgtctaggc ctttgggtcg caagaccgcc
    1351  gggcctggag tttccaagtt ctctaaaaaa aaaaaaaa