Sequence of DPV Suakwa aphid-borne yellows virus

Suakwa aphid-borne yellows virus isolate SABYV-PH16 RdRp protein (RdRp), coat protein (CP), and movement protein (MP) genes, partial cds.

ACC No: HQ997896

Dated: 2012-07-13 | Length: 1367 | CRC: 383160058

                
ID   HQ997896; SV 1; linear; genomic RNA; STD; VRL; 1367 BP.
XX
AC   HQ997896;
XX
DT   13-JUL-2012 (Rel. 113, Created)
DT   13-JUL-2012 (Rel. 113, Last updated, Version 1)
XX
DE   Suakwa aphid-borne yellows virus isolate SABYV-PH16 RdRp protein (RdRp),
DE   coat protein (CP), and movement protein (MP) genes, partial cds.
XX
KW   .
XX
OS   Suakwa aphid-borne yellows virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC   Polerovirus.
XX
RN   [1]
RP   1-1367
RA   Knierim D., Tsai W.S., Dolores L.M., Kenyon L.;
RT   "First report of Suakwa aphid-borne yellows virus in Luffa acutangula and
RT   Momordica charantica in the Philippines";
RL   Unpublished.
XX
RN   [2]
RP   1-1367
RA   Knierim D., Tsai W.S., Dolores L.M., Kenyon L.;
RT   ;
RL   Submitted (24-JAN-2011) to the INSDC.
RL   Virology, AVRDC- The World Vegetable Center, PO Box 42, Shanhua, Tainan
RL   74199, Taiwan
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1367
FT                   /organism="Suakwa aphid-borne yellows virus"
FT                   /host="Momordica charantia (bitter gourd)"
FT                   /isolate="SABYV-PH16"
FT                   /mol_type="genomic RNA"
FT                   /country="Philippines:Laguna"
FT                   /collection_date="22-Nov-2010"
FT                   /db_xref="taxon:646010"
FT   gene            <1. .579
FT                   /gene="RdRp"
FT   CDS             <1. .579
FT                   /codon_start=1
FT                   /gene="RdRp"
FT                   /product="RdRp protein"
FT                   /protein_id="AEX66161.1"
FT                   /translation="SVSSWMLEDDMEVRNNLTINNNELTRRLRACWLKCISNSVICLSD
FT                   GTLLAQEFPGIQKSGSYNTSSTNSRVRVMLSIYAGASWAVAMGDDALESADTIIPIYEL
FT                   YGLKVEVSDKLEFCSHEFKSSSLAIPTNIGKMIYKLIHGYEIFPGMSSIQVTINYLTAC
FT                   YSVLNELRHVPEAASLVAQCLAPVEAQKV"
FT   misc_feature    578. .778
FT                   /note="intergenic NCR"
FT   gene            779. .>1367
FT                   /gene="CP"
FT   CDS             779. .>1367
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /protein_id="AEX66162.1"
FT                   /translation="MNTVVVRNRNGMGRRRRNRRNIAKGNRVVVVQAPRAPQRGRRRRR
FT                   NGRRPSRGGRAGGTSQGETFVFSKDNLTGSSSGAITFGPSLSDSPAFSSGILKAYHEYK
FT                   ISMVKLEFISEASSTSSGSISYELDPHCKLSSLQSTVNKFGITKSGSRTWGAKFINGTE
FT                   WHDATEDQFRILYKGNGSSSTAGSFRITIKCHV"
FT   gene            807. .>1367
FT                   /gene="MP"
FT   CDS             807. .>1367
FT                   /codon_start=1
FT                   /gene="MP"
FT                   /product="movement protein"
FT                   /protein_id="AEX66163.1"
FT                   /translation="MAWEEGEGTAGTLQKATAWLWSKPLGLHSAEDDDDETADVLLEEA
FT                   ELEEQAKARHLYSARTISRAVPLEQSLSGRLYQTAQHSALEYSRPTMSIKSQWLSWSSS
FT                   PRPLPRPPVPSLMSWTPIASLAPSNPRLINSESPRVDHERGALSLLTGRNGTTPPRISS
FT                   ASCIKETGVPRRRDLLESPSSAMS"
XX
SQ   Sequence 1367 BP; 371 A; 344 C; 322 G; 330 T; 0 other;

hq997896 Length: 1367  13-JUL-2012  Type: N  Check: 6614  ..

       1  agcgtctcat cttggatgct cgaggatgac atggaggtta gaaataacct
      51  caccatcaat aacaacgagc tcaccaggcg ccttcgcgct tgctggttga
     101  agtgcatatc gaactctgtg atatgcctgt ccgatgggac tttactcgcc
     151  caggagtttc ccggtataca aaaatcgggc tcctataaca ccagctccac
     201  gaactcaaga gtgagagtta tgctctctat ttacgctggt gcttcctggg
     251  ccgtagctat gggcgatgac gcccttgagt ccgccgatac gataatccca
     301  atatatgaat tatacggact caaagtcgag gtctctgaca aactggaatt
     351  ttgttctcat gagttcaaaa gttcgagcct cgccatcccc acgaatatag
     401  ggaaaatgat ttacaagctc atacatggat atgagatctt cccggggatg
     451  tccagcattc aggttactat caattatttg actgcctgct actcagttct
     501  aaacgaactg cgtcacgtgc ctgaagctgc ttctcttgtc gcgcagtgcc
     551  tcgctccagt cgaggcacaa aaagtttaaa caaaagcgcg cgcataaaac
     601  tagccggaaa tacgttgttg caattgccgg aagttaacag tcaactacaa
     651  cataggccaa ccagatttca agtttttagc aggatttact tcgggcttcc
     701  tgacagctgt tccaatttca gcacttggcc tatatttaat ctacctaaag
     751  atttctaaac acgtgcaatc aattgttaat gaatacggtc gtggttagaa
     801  atcgaaatgg catgggaaga aggagaagga accgccggaa cattgcaaaa
     851  ggcaaccgcg tggttgtggt ccaagcccct agggctccac agcgcggaag
     901  acgacgacga cgaaacggcc gacgtccttc tcgaggaggc agagctggag
     951  gaacaagcca aggcgagaca tttgtattca gcaaggacaa tctcacgggc
    1001  agttcctctg gagcaatcac tttcgggccg tctttatcag acagcccagc
    1051  attcagctct ggaatactca aggcctacca tgagtataaa atctcaatgg
    1101  ttaagttgga gttcatctcc gaggcctctt ccacgtcctc cggttccatc
    1151  tcttatgagt tggaccccca ttgcaagctt agctccctcc aatccacggt
    1201  taataaattc ggaatcacca agagtggatc acgaacgtgg ggcgctaagt
    1251  ttattaacgg gacggaatgg cacgacgcca ccgaggatca gttccgcatc
    1301  ctgtataaag gaaacgggag ttcctcgacg gcgggatctt ttagaatcac
    1351  catcaagtgc catgtcc