Sequence of DPV Influenza B virus

Influenza B/Lee/40, matrix protein (complete seg 7) RNA.

ACC No: J02094

Dated: 2000-03-04 | Length: 1191 | CRC: 1023719273

                !!NA_SEQUENCE 1.0
ID   ORBL40M    standard; RNA; VRL; 1191 BP.
XX
AC   J02094;
XX
SV   J02094.1
XX
DT   13-JUN-1985 (Rel. 06, Created)
DT   04-MAR-2000 (Rel. 63, Last updated, Version 2)
XX
DE   Influenza B/Lee/40, matrix protein (complete seg 7) RNA.
XX
KW   matrix protein; membrane protein.
XX
OS   Influenzavirus B
OC   Viruses; ssRNA negative-strand viruses; Orthomyxoviridae.
XX
RN   [1]
RP   1-1191
RX   MEDLINE; 82154757.
RA   Briedis D.J., Lamb R.A., Choppin P.W.;
RT   "Sequence of RNA segment 7 of the influenza B virus genome: partial amino
RT   acid homology between the membrane proteins (M1) of influenza A and B
RT   viruses and conservation of a second open reading frame";
RL   Virology 116:581-588(1982).
XX
DR   SWISS-PROT; P03489; VMT1_INBLE.
DR   SWISS-PROT; P03493; VMT2_INBLE.
XX
CC   Sequence reported in [1] flanked on 5' end by vector DNA
CC   (agcagctcctgc). Determination of M1 cds by consideration of open
CC   reading frames and comparison with related sequences. There is an
CC   open reading frame from 513 to 1100 which may encode (part of) an
CC   m2 protein. The similarity of this sequence to those of the type A
CC   viruses is too inexact to tell.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1191
FT                   /db_xref="taxon:11520"
FT                   /organism="Influenzavirus B"
FT   CDS             25. .771
FT                   /codon_start=1
FT                   /db_xref="SWISS-PROT:P03489"
FT                   /note="matrix protein M1"
FT                   /protein_id="AAA43726.1"
FT                   /translation="MSLFGDTIAYLLSLIEDGEGKAELAEKLHCWFGGKEFDLDSALEW
FT                   IKNKRCLTDIQKALIGASICFLKPKDQERKRRFITEPLSGMGTTATKKKGLILAERKMR
FT                   RCVSFHEAFEIAEGHESSALLYCLMVMYLNPENYSMQVKLGTLCALCEKQASHSHRAHS
FT                   RAARSSVPGVRREMQMVSAMNTAKTMNGMGKGEDVQKLAEELQNNIGVLRSLGASQKNG
FT                   EGIAKDVMEVLKQSSMGNSALVRKYL"
XX
SQ   Sequence 1191 BP; 447 A; 200 C; 262 G; 282 T; 0 other;

J02094  Length: 1191  September 18, 2002 10:52  Type: N  Check: 6458  ..

       1  agcagaagca cgcactttct taaaatgtcg ctgtttggag acacaattgc
      51  ctacctgctt tcactaatag aagatggaga aggcaaagca gaactagctg
     101  aaaaattaca ctgttggttc ggtgggaaag aatttgacct agattctgct
     151  ttggaatgga taaaaaacaa aaggtgccta actgatatac aaaaagcact
     201  aattggtgcc tctatatgct ttttaaaacc caaagaccaa gaaagaaaaa
     251  ggagattcat cacagagccc ctgtcaggaa tgggaacaac agcaacaaag
     301  aagaaaggcc taattctagc tgagagaaaa atgagaagat gtgtaagctt
     351  tcatgaagca tttgaaatag cagaaggcca cgaaagctca gcattactat
     401  attgtcttat ggtcatgtac ctaaaccctg aaaactattc aatgcaagta
     451  aaactaggaa cgctctgtgc tttatgcgag aaacaagcat cgcactcgca
     501  tagagcccat agcagagcag caaggtcttc ggtacctgga gtaagacgag
     551  aaatgcagat ggtttcagct atgaacacag caaagacaat gaatggaatg
     601  ggaaagggag aagacgtcca aaaactagca gaagagctgc aaaacaacat
     651  tggagtgttg agatctctag gagcaagtca aaagaatgga gaaggaattg
     701  ccaaagatgt aatggaagtg ctaaaacaga gctctatggg aaattcagct
     751  cttgtgagga aatacttata atgctcgaac cacttcagat tctttcaatt
     801  tgttctttca ttttatcagc tctccatttc atggcttgga caatagggca
     851  tttgaatcaa ataaaaagag gggtaaactt gaaaatacaa ataaggaatc
     901  caaataagga ggcaataaac agagaggtgt caattctgag acacaattac
     951  caaaaggaaa tccaagccaa agaaacaatg aagaaaatac tctctgacaa
    1001  catggaagta ttgggtgacc acatagtagt tgaagggctt tcaactgatg
    1051  agataataaa aatgggtgaa acagttttgg aggtggaaga attgcaatga
    1101  gcccaatttt cactgtattt cttactatgc atttaagcaa attgtaatca
    1151  atgtcagtga ataaaactgg aaaaagtgcg ttgtttctac t