Sequence of DPV Influenza B virus

Influenza B/Lee/40, nonstructural protein (seg 8), RNA.

ACC No: J02096

Dated: 2000-03-04 | Length: 1096 | CRC: 1082413217

                !!NA_SEQUENCE 1.0
ID   ORBL40NS   standard; RNA; VRL; 1096 BP.
XX
AC   J02096;
XX
SV   J02096.1
XX
DT   13-JUN-1985 (Rel. 06, Created)
DT   04-MAR-2000 (Rel. 63, Last updated, Version 3)
XX
DE   Influenza B/Lee/40, nonstructural protein (seg 8), RNA.
XX
KW   nonstructural protein.
XX
OS   Influenzavirus B
OC   Viruses; ssRNA negative-strand viruses; Orthomyxoviridae.
XX
RN   [1]
RP   6-150
RX   MEDLINE; 80215356.
RA   Air G.M., Hackett J.A.;
RT   "Gene 8 of influenza virus: sequences of cDNA transcribed from the 3' ends
RT   of viral RNA of influenza A and B strains";
RL   Virology 103:291-298(1980).
XX
RN   [2]
RP   1-1096
RX   MEDLINE; 82216985.
RA   Briedis D.J., Lamb R.A.;
RT   "Influenza B virus genome: sequences and structural organization of RNA
RT   segment 8 and the mRNAs coding for the NS-1 and NS-2 proteins";
RL   J. Virol. 42:186-193(1982).
XX
DR   SWISS-PROT; P03502; VNS1_INBLE.
DR   SWISS-PROT; P03511; VNS2_INBLE.
XX
CC   No antigenicity (sub-type) specified. viral RNA sequence determined
CC   by analysis of fragments of cDNA (synthesized with polyadenylated
CC   vRNA) cloned (pbn27) in pbr322. NS-2 mRNA sequence determined by
CC   analysis of cDNA fragment (from above clone) primer. Coding regions
CC   and introns assigned by consideration of open reading frames,
CC   comparison of predicted MW with experimentally determined MW,
CC   comparison to the coding regions of segment 8 in other influenza
CC   strains and consideration of consensus splice sites. The influenza
CC   genome is single-stranded RNA, and minus-stranded. The sequence
CC   reported below is the + strand.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1096
FT                   /db_xref="taxon:11520"
FT                   /organism="Influenzavirus B"
FT   CDS             43. .888
FT                   /codon_start=1
FT                   /db_xref="SWISS-PROT:P03502"
FT                   /note="nonstructural protein NS-1"
FT                   /protein_id="AAA43756.1"
FT                   /translation="MADNMTTTQIEVGPGATNATINFEAGILECYERFSWQRALDYPGQ
FT                   DRLHRLKRKLESRIKTHNKSEPENKRMSLEERKAIGVKMMKVLLFMDPSAGIEGFEPYC
FT                   VKNPSTSKCPNYDWTDYPPTPGKYLDDIEEEPENVDHPIEVVLRDMNNKDARQKIKDEV
FT                   NTQKEGKFRLTIKRDIRNVLSLRVLVNGTFLKHPNGDKSLSTLHRLNAYDQNGGLVAKL
FT                   VATDDRTVEDEKDGHRILNSLFERFDEGHSKPIRAAETAVGVLSQFGQEHRLSPEEGDN
FT                   "
FT   exon            <43. .75
FT                   /note="nonstructural protein NS-2"
FT   CDS             join(43. .75,731. .1066)
FT                   /codon_start=1
FT                   /db_xref="SWISS-PROT:P03511"
FT                   /note="nonstructural protein NS-2"
FT                   /protein_id="AAA43755.1"
FT                   /translation="MADNMTTTQIEWRMKKMAIGSSTHSSSVLMKDIQSQFEQLKLRWE
FT                   SYPNLVKSTDYHQKRETIRLATEELYLLSKRIDDSILFHKTVIANSSIIADMIVSLSLL
FT                   ETLYEMKDVVEVYSRQCL"
FT   intron          76. .730
FT                   /note="ns2 cds intron"
FT   exon            731. .>1066
FT                   /note="nonstructural protein NS-2"
FT                   /number=2
XX
SQ   Sequence 1096 BP; 382 A; 199 C; 254 G; 261 T; 0 other;

J02096  Length: 1096  September 18, 2002 10:52  Type: N  Check: 5672  ..

       1  cgcagaagca gaggatttat ttagtcactg gcaaacggaa agatggcgga
      51  caacatgacc acaacacaaa ttgaggtggg tccgggagca accaatgcca
     101  ctataaactt tgaagcagga attctggagt gctatgaaag gttttcatgg
     151  caaagagccc ttgactatcc tggtcaagac cgcctacaca gactaaaacg
     201  aaaattagaa tcaagaataa agactcacaa caagagtgag cctgagaata
     251  aaaggatgtc tcttgaagag agaaaagcaa ttggggtaaa aatgatgaaa
     301  gtgcttctgt ttatggatcc ctctgctgga attgaagggt ttgagccata
     351  ctgtgtgaaa aatccctcaa ctagcaaatg tccaaattac gattggaccg
     401  attaccctcc aaccccagga aagtaccttg atgacataga agaagagccg
     451  gaaaatgtcg atcacccaat tgaggtagta ttaagggaca tgaacaataa
     501  agatgcacga caaaagataa aggatgaagt aaacactcag aaagagggga
     551  aattccgttt gacaataaaa agggatatac gtaatgtgtt gtccttgaga
     601  gtgttggtga acggaacctt cctcaagcac cctaatggag acaagtcctt
     651  atcaactctt catagattga atgcatatga ccagaatgga gggcttgttg
     701  ctaaacttgt tgctactgat gatcggacag tggaggatga aaaagatggc
     751  catcggatcc tcaactcact cttcgagcgt tttgatgaag gacattcaaa
     801  gccaattcga gcagctgaaa ctgcggtggg agtcttatcc caatttggtc
     851  aagagcaccg attatcacca gaagagggag acaattagac tggccacgga
     901  agaactttat ctcttgagta aaagaattga tgatagtata ttgttccaca
     951  aaacagtaat agctaacagc tccataatag ctgacatgat tgtatcatta
    1001  tcattactgg aaacattgta tgaaatgaag gatgtggttg aagtgtacag
    1051  caggcagtgc ttatgaatgt aaaataaaaa tcctcttgtt actact