Sequence of DPV Red clover necrotic mosaic virus
Red clover necrotic mosaic virus RNA-1, complete sequence.
ACC No: J04357
Dated: 2005-04-17 | Length: 3890 | CRC: 1313232103
!!NA_SEQUENCE 1.0
ID RNMRS1 standard; genomic RNA; VRL; 3890 BP.
XX
AC J04357; M24621;
XX
SV J04357.1
XX
DT 02-FEB-1990 (Rel. 22, Created)
DT 17-APR-2005 (Rel. 83, Last updated, Version 7)
XX
DE Red clover necrotic mosaic virus RNA-1, complete sequence.
XX
KW capsid protein; RNA polymerase.
XX
OS Red clover necrotic mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae;
OC Dianthovirus.
XX
RN [1]
RP 1-3890
RX MEDLINE; 93174929.
RX PUBMED; 8438566.
RA Xiong Z., Kim K.H., Kendall T.L., Lommel S.A.;
RT "Synthesis of the putative red clover necrotic mosaic virus RNA polymerase
RT by ribosomal frameshifting in vitro";
RL Virology 193(1):213-221(1993).
XX
RN [2]
RP 1-3890
RX MEDLINE; 89348013.
RX PUBMED; 2763465.
RA Xiong Z., Lommel S.A.;
RT "The complete nucleotide sequence and genome organization of red clover
RT necrotic mosaic virus RNA-1";
RL Virology 171(2):543-554(1989).
XX
CC Draft entry and computer readable copy of sequence [1] kindly
CC provided by Z.Xiong 15-MAY-1989.
XX
FH Key Location/Qualifiers
FH
FT source 1. .3890
FT /chromosome="RNA-1"
FT /db_xref="taxon:12267"
FT /mol_type="genomic RNA"
FT /organism="Red clover necrotic mosaic virus"
FT /strain="Australia"
FT CDS join(124. .831,834. .2426)
FT /codon_start=1
FT /db_xref="GOA:P22956"
FT /db_xref="UniProt/Swiss-Prot:P22956"
FT /note="putative; -1 ribosome frameshifting"
FT /product="88 kDa protein"
FT /protein_id="AAB02540.1"
FT /translation="MGFINLSLFDVDKLMVWVSKFNPGKILSAICNLGIDCWNRFRKWF
FT FGLNFDAHMWAVDAFIPLMPHYTEQMERVVDDFCSETPESKLEDCLELDTSVNEFFDEE
FT VYKKDEEGVMKLQRSAARKHIKRVRPGMMQAAIKAVETRIRNRHTIFGDDMGKVDEAAV
FT RATASDICGEFKINEHHTNALVYAAAYLAMTPDQRSIDSVKLAYNPKSQARRTLVSAIR
FT ENKAVAGFKSLEDFGGPLSFPVEDAPYPILGIPEIRVAEKRASRVMKSKRVVGLPAVSA
FT GLKVCVHQTSLHNMIVSLERRVFRVKNSAGELVVPPKPIQNAFDSISYFREEWLRKLSH
FT KGQILKSSLADVVACYSSEKRKLYQKAADSLEKKPVQWRDSKVQAFIKVEKLECDTKDP
FT VPRTIQPRSKRYNLAIGQYLRLNEKKMLDSIDDVFKEKTVLSGLDNRAQGRAIAHKWRK
FT YQNPIGIGLDASRFDQHCSVDALKFEQTFYKACFPGDQQLETLLKWQLSNTGSALLPTG
FT ELVRYRTKGCRMSGDINTGLGNKILMCSMVHAFLKETGVRASLANNGDDCVLFCEKGDY
FT EQINRNLEQWFLCRGFEMTVEKPVDVLEKVAFCRSQPVCIATQWAMVRQLGSLSRDCFS
FT TQDWLNPKTFKDAMNALGQCNGIINDGVPIHMAQAKLMHRIGGNRKFNLDALHKQMEYS
FT WRDRLGKRTNLLWSEVEDATRLSYFRAFGIEPYIQRIVEEYFSQVEITCEGRSTNVLPT
FT HYSRIHKDLIKAR"
FT CDS 124. .834
FT /codon_start=1
FT /db_xref="GOA:P22956"
FT /db_xref="UniProt/Swiss-Prot:P22956"
FT /note="putative"
FT /product="27 kDa protein"
FT /protein_id="AAB02539.1"
FT /translation="MGFINLSLFDVDKLMVWVSKFNPGKILSAICNLGIDCWNRFRKWF
FT FGLNFDAHMWAVDAFIPLMPHYTEQMERVVDDFCSETPESKLEDCLELDTSVNEFFDEE
FT VYKKDEEGVMKLQRSAARKHIKRVRPGMMQAAIKAVETRIRNRHTIFGDDMGKVDEAAV
FT RATASDICGEFKINEHHTNALVYAAAYLAMTPDQRSIDSVKLAYNPKSQARRTLVSAIR
FT ENKAVAGFKSLEDF"
FT misc_feature 821. .841
FT /note="frameshifting region (put.); putative"
FT CDS 927. .2426
FT /codon_start=1
FT /db_xref="GOA:P22956"
FT /db_xref="UniProt/Swiss-Prot:P22956"
FT /note="57 kD protein (put.); putative"
FT /protein_id="AAB02541.1"
FT /translation="MKSKRVVGLPAVSAGLKVCVHQTSLHNMIVSLERRVFRVKNSAGE
FT LVVPPKPIQNAFDSISYFREEWLRKLSHKGQILKSSLADVVACYSSEKRKLYQKAADSL
FT EKKPVQWRDSKVQAFIKVEKLECDTKDPVPRTIQPRSKRYNLAIGQYLRLNEKKMLDSI
FT DDVFKEKTVLSGLDNRAQGRAIAHKWRKYQNPIGIGLDASRFDQHCSVDALKFEQTFYK
FT ACFPGDQQLETLLKWQLSNTGSALLPTGELVRYRTKGCRMSGDINTGLGNKILMCSMVH
FT AFLKETGVRASLANNGDDCVLFCEKGDYEQINRNLEQWFLCRGFEMTVEKPVDVLEKVA
FT FCRSQPVCIATQWAMVRQLGSLSRDCFSTQDWLNPKTFKDAMNALGQCNGIINDGVPIH
FT MAQAKLMHRIGGNRKFNLDALHKQMEYSWRDRLGKRTNLLWSEVEDATRLSYFRAFGIE
FT PYIQRIVEEYFSQVEITCEGRSTNVLPTHYSRIHKDLIKAR"
FT CDS 2428. .3447
FT /codon_start=1
FT /db_xref="GOA:P22955"
FT /db_xref="HSSP:2TBV"
FT /db_xref="InterPro:IPR000937"
FT /db_xref="InterPro:IPR008975"
FT /db_xref="UniProt/Swiss-Prot:P22955"
FT /note="37 kD capsid protein (put.); putative"
FT /protein_id="AAB02542.1"
FT /translation="MSSKAPKKSKQRSQPRNRTPNTSVKTVAIPFAKTQIIKTVNPPPK
FT PARGILHTQLVMSVVGSVQMRTNNGKSNQRFRLNPSNPALFPTLAYEAANYDMYRLKKL
FT TLRYVPLVTVQNSGRVAMIWDPDSQDSAPQSRQEISAYSRSVSTAVYEKCSLTIPADNQ
FT WRFVADNTTVDRKLVDFGQLLFVTHSGSDGIETGDIFLDCEVEFKGPQPTASIVQKTVI
FT DLGGTLTSFEGPSYLMPPDAFITSSSFGLFVDVAGTYLLTLVVTCSTTGSVTVGGNSTL
FT VGDGRAAYGSSNYIASIVFTSSGVLSTTPSVQFSGSSGVSRVQMNICRCKQGNTFILG"
FT misc_signal 3862. .3890
FT /note="stem-loop structure"
XX
SQ Sequence 3890 BP; 1122 A; 857 C; 946 G; 965 T; 0 other;
J04357 Length: 3890 May 10, 2005 10:09 Type: N Check: 505 ..
1 gacaaacgtt ttaccggttt gtaaatagga gcacacaagc tcgctagtcg
51 cccccttcgt atcggggatc tagagattaa acggtatacc tgtcatttta
101 aatttctact tttcgtacca gtcatgggtt ttataaatct ttcgcttttt
151 gatgtggata aattaatggt gtgggtgagt aaattcaatc caggcaaaat
201 cctgtctgca atctgcaact tgggtataga ctgttggaat cgctttcgca
251 agtggttctt tggtctcaac tttgatgcac atatgtgggc ggtggatgcc
301 ttcattccac tcatgccaca ttacacggag cagatggaac gtgtagtcga
351 cgacttctgc agcgaaaccc cagaatccaa attagaagac tgtctggaac
401 tggacacctc agtaaatgaa ttcttcgatg aagaggtgta caagaaggat
451 gaggaaggcg tgatgaaact ccaaaggagc gctgccagga aacacattaa
501 acgtgtgcgc ccaggcatga tgcaagcggc cattaaggct gtagaaacga
551 ggatcagaaa tcgccatacc atctttggag atgacatggg aaaggtagac
601 gaagctgcag ttagagcaac tgccagtgac atatgtggtg agttcaagat
651 caacgaacac cacaccaatg cattggtgta tgccgcagca taccttgcca
701 tgacaccaga ccagaggtct atcgacagcg tcaagctcgc ctacaatcct
751 aagagtcaag ccagaaggac tttggtttca gccattcgtg agaacaaggc
801 tgttgccggg ttcaaatccc ttgaggattt ttaggcggcc cactcagctt
851 tccggttgaa gatgccccat atcctatttt aggcatcccg gaaatcaggg
901 tagctgagaa gcgggccagt agagtcatga aaagtaagag agtcgtaggg
951 ttacctgctg ttagtgcagg tttgaaggtt tgcgtccatc aaacctccct
1001 acataatatg atagttagtc tcgaacgcag ggtttttcgt gtgaagaact
1051 ctgcaggaga gttagtagta cctcccaaac ctatccaaaa tgcatttgac
1101 tccatttcct atttccgtga agaatggttg aggaaattgt ctcacaaggg
1151 tcaaattctc aagtcctctt tggcggatgt tgtggcgtgt tactcttctg
1201 aaaagaggaa gttataccaa aaagcagcag actccttaga gaagaaacct
1251 gtgcaatgga gagactccaa ggtacaagca ttcatcaaag ttgaaaagct
1301 tgagtgtgac accaaggatc ccgtacctcg tacgattcaa cctcgatcca
1351 agaggtacaa cctagcaata ggccagtatc tcagattaaa tgaaaagaag
1401 atgttggatt ccatagacga cgttttcaaa gagaagactg tcttatcagg
1451 tttggacaac agggctcaag ggagagccat cgcccacaag tggcgtaaat
1501 accagaaccc aatagggatc gggctggatg catcgagatt cgatcaacat
1551 tgcagcgtcg atgccctcaa attcgagcaa actttctata aagcgtgctt
1601 tcctggggat caacagttgg aaacattatt gaaatggcaa ttatccaata
1651 ctggatcggc tttgttacca actggagaac tggttagata tcgtaccaaa
1701 gggtgtcgca tgagcggcga tataaacaca ggccttggga acaaaattct
1751 catgtgcagc atggtacacg cattcttgaa agagacggga gtgcgagctt
1801 cgttggccaa caatggtgac gattgtgtcc tcttctgtga gaagggagat
1851 tatgagcaga taaaccgcaa tcttgagcaa tggttcctgt gcaggggttt
1901 cgaaatgacc gtcgaaaaac ctgtcgatgt actcgagaag gtggcgtttt
1951 gtcgtagtca accggtttgc attgccacgc aatgggctat ggtaaggcaa
2001 ttgggaagtt tgtcgagaga ctgcttttca acacaggatt ggttaaaccc
2051 aaagacattc aaagatgcaa tgaatgcgct aggtcaatgt aacgggatca
2101 tcaatgatgg agttccaata catatggcac aagcaaaact aatgcataga
2151 atcggtggaa accgtaagtt caatctagat gcgcttcata aacaaatgga
2201 gtacagctgg agagatcgtc tcggtaagag aacgaatctt ttgtggagtg
2251 aggtagagga tgctacaaga ttgtcgtact ttagagcatt cggaatagaa
2301 ccttacattc aaagaatagt ggaggagtac ttctcacagg tggaaatcac
2351 ttgtgagggg cgatcaacaa acgtattacc tacacactac tctagaatcc
2401 acaaagatct aatcaaagcc cgataaaatg tcttcaaaag ctcccaagaa
2451 atccaaacaa cggtcccagc ccaggaaccg gaccccaaat accagtgtaa
2501 agactgtagc catccccttt gccaagacgc aaataatcaa gactgtgaat
2551 cctccaccga aaccagcaag aggtatattg catacccagt tagttatgag
2601 tgtggttgga tcagttcaaa tgcgtacaaa taatggcaaa tccaaccaaa
2651 ggttcagatt aaaccctagc aatcctgctc ttttccccac tctagcatat
2701 gaagctgcaa attatgacat gtatcgctta aagaagctga cactccgtta
2751 cgtcccactc gttaccgtgc aaaattccgg gcgagttgca atgatctggg
2801 atcccgactc gcaagactcg gccccacaat ccagacagga gatatcagcc
2851 tattcccgat cagtctcgac tgccgtgtac gagaaatgct cgttgacgat
2901 tccggcggat aatcaatggc gcttcgttgc agataacacc acagtggaca
2951 gaaagctcgt cgattttggc cagcttttgt tcgttacaca ctctggtagt
3001 gatggaatag aaacagggga catattctta gattgtgaag tcgagttcaa
3051 aggaccccaa ccaaccgcaa gcatcgtaca gaaaactgta attgatctcg
3101 gtgggacact cacttctttc gaagggccat cttatctgat gcctccggat
3151 gcctttatta ccagttctag tttcggcctg tttgttgacg tcgcagggac
3201 ctatctgctt acactagtgg tgacttgttc gaccactggt agcgtcacag
3251 taggaggaaa ttcaactctg gttggcgacg gtagggcggc atacggtagt
3301 agcaattaca ttgcttctat agtattcact agttcgggtg tgttatcgac
3351 cacccctagt gtgcagtttt caggttcctc tggagtatca cgcgtgcaaa
3401 tgaacatctg cagatgtaaa caggggaaca ctttcatact tggttaattg
3451 gttcttttaa gtgtagcctc cacccgagtt gcaagagggg aacacgcagt
3501 ctcgccgacc ctgttggcaa acagtaaaat tgcaaaaaat agagtgctag
3551 gagtagttcc cgtacccgcg ggagcaagac cctactacag tagacgaacc
3601 ggcatcggac cctgggaaac aggtacctag cgtattaata ggtcgctaga
3651 aatcgggcgg gcttcacctt cgggtaaccc gccgtcgaga gggaaaacct
3701 ctgtgtggtt gtgcgcacgt cgttgtcgga agactctcac tgttgtagtt
3751 atttcctttt tcttttaggt aggagcactt gctcagaggg cgcatacctc
3801 tggtaaaaca aaattggccc ctgagagtag aaaactcagg ttaataaaac
3851 aggagaatat ttacctagtc gtataacggc taggtacccc