Sequence of DPV Ononis yellow mosaic virus
Ononis yellow mosaic virus complete genome.
ACC No: J04375
Dated: 2005-04-17 | Length: 6211 | CRC: -583108378
!!NA_SEQUENCE 1.0
ID MTYCG standard; genomic RNA; VRL; 6211 BP.
XX
AC J04375;
XX
SV J04375.1
XX
DT 20-JUN-1990 (Rel. 24, Created)
DT 17-APR-2005 (Rel. 83, Last updated, Version 5)
XX
DE Ononis yellow mosaic virus complete genome.
XX
KW complete genome; replicase; virion protein.
XX
OS Ononis yellow mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tymoviridae;
OC Tymovirus.
XX
RN [1]
RP 1-6211
RX MEDLINE; 90021186.
RX PUBMED; 2800337.
RA Ding S.-W., Keese P., Gibbs A.;
RT "Nucleotide sequence of the ononis yellow mosaic tymovirus genome.";
RL Virology 172(2):555-563(1989).
XX
FH Key Location/Qualifiers
FH
FT source 1. .6211
FT /db_xref="taxon:12153"
FT /mol_type="genomic RNA"
FT /organism="Ononis yellow mosaic virus"
FT CDS 172. .1965
FT /codon_start=1
FT /db_xref="GOA:P20130"
FT /db_xref="InterPro:IPR004935"
FT /db_xref="UniProt/Swiss-Prot:P20130"
FT /note="protein of unknown function (OP)"
FT /protein_id="AAA46795.1"
FT /translation="MSNGLRTSFERISLFHPQGFISESSAEFCCSAPSNLSPKFPMDHW
FT ERTSSFSPRCRHPDLRVRLQSSPPRGPQSDRNLPSLQPLELHGDRPGLCDVHETLQVQK
FT IGLRQSKLLRTSKLPSHRGRFRSIPLHLHLSSEVRNRFHARCPDVLQPLSDTRPLHSVP
FT LSSEAPLQSSCSPRKLLHRPLSPPKPLHLHNFRQHSSLCSRRSPCRKLRPTPRCNQLAQ
FT AQQHPLPSSKPLSLQAGILGPCPLPPHNKRSPSPAVIRKTAGILPHPKLPPSSRGHLPS
FT STSSSSPRSNRGVRCSVHLHKSRSNSQDLRSCRVRSNSLQQTPILMGHFKSLGQSPNLR
FT SFERPRPTRRSLRLLPLSPQKVPTVHVPTHQQSGHKGPSLPRPHSPSRQTHHARLPHSK
FT RVSLPNSVLHHDRPKRPIHFGSFPINVAPSHLLPRKLWSRASSPPTCSPTTSNHGHPEE
FT ALRFLPKNLPQHCQMALMENYCSHFSSPSSSVSFPEDHQSSLPPISTRWVQCSSPSFSL
FT QSFLVIGDIPCPISFPLSSPQSHSSESLRGDSPPSSHLPSSPSSACSGDSFASCSSFGP
FT SNPTSSASALGGNHFNFSFFS"
FT CDS 179. .5509
FT /codon_start=1
FT /db_xref="GOA:P20127"
FT /db_xref="InterPro:IPR000606"
FT /db_xref="InterPro:IPR001788"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="InterPro:IPR007095"
FT /db_xref="InterPro:IPR008043"
FT /db_xref="UniProt/Swiss-Prot:P20127"
FT /note="replicase protein (RP)"
FT /protein_id="AAA46796.1"
FT /translation="MAFELALNALASSTHKDSSLNPVLNSAVQPLQTSLQNFPWIIGKE
FT HLPFLLAAGIPTSGFGCNPHPHAVHKVIETFLLFNHWSFMATVQASVMFMKPSKFKKLA
FT SVNPNFSELVNYRLTAADSVRYPSTSTSLPKYEIVFMHDALMYFNPSQILDLFIQCPSL
FT QRLHCSLVVPPESSFTDLSLHPNLYTYTISGNTLHYVPEGHHAGSYDQPLDAISWLKLN
FT SIHSPHLNLSVSKLESWGPVHSLLITRGLPHLPSSEKQQVSFHIPNCLPLPEATFLHQP
FT LRHRLVPTEVYDALFTYTRAVRTLRTSDPAGFVRTHSNKPQYSWVTSRAWDNLQTYALL
FT NAPVRPVVLFDFFLSPLKKFQLFMSQHINSLVIKALPFLGLIPPLVKLTTLGFPIPSVS
FT HFQILFFTMIGPSGQFILEAFPSMLHPAISYLESCGLVPRLPPPVAQQLQTMGILRKRS
FT AFSLKTSLSTVKWPSWKITALISALPAALSVFLKTISPLSLQSLHDGYNAHLHPSPFNL
FT SWSLETFHVQSPSPFLPLSLTPPSPSEEIALPPPIFRVPPPLPAQETPSPPAPALVPPT
FT QPPQPQPWEEIISTFLSSLNASSHKPSPSSAPLESPSPIPESFEVLAEAPQHQRSINEC
FT GALNQLPLPVPSPLQNSTNPKPPFPSSDLLSDMSCTGPVVEFETIFPAEYHMSNGSFPT
FT RLRGHPRSSAPFPQKHCLLTAVASQLSYTEHQLWEFLCDMLPDSLLTNSEVENFGLSTD
FT HLTCLSYRLHFECIIHTSHSTIPYGIKKASTVIQISYIDGPPKHFKAFIKLAAAAPGSN
FT PSKSNLVRAALRFKYNDAFLPFWDAHQHTISVPHAKNLISNMKNGFDGITSQLSGPSNK
FT SPKMKLLELDATIDVSFPRKCDVIHIAGFPGCGKSHPIQKLLQTPAFRHFRLSVPTNEL
FT RSEWKRDLNLPESEVWRLCTWETALFKSSNILVVDEIYKLPRGYLDLILLADPSIQLVI
FT MLGDPLQGEYHSSHPSSSNSRLESETTRLSKYIDCYCWWTYRCPKAVADLFGVKTFNSN
FT EGFIRAVLSHPPNLPNLVNSIATANTMQSLGHHALTISSSQGMTYSDPVTVLLDRHSLL
FT ITPQTALVALTRSRSGIYFIGSMYTASGSAGTSYMFSCALTGLPVDMMSAFPLFHTLPL
FT IHEPIRSRRHRLVAGHTPSLHVPPSNKWPHRLHLPPHIPTSHSKDVILAHGIVASNAPE
FT RRLTTLHLPPTRLPLHFDLESCNPSTVSTSSTSNSEVPFTHAFLGESFEELAAHFLPAH
FT DPDLKEVTVGDQTSQQFPYLDQPYTLSCQPSSLLAASHKPASDPTLLIFSISKRLRFRA
FT SSSPYAFTPNDLILGHLLYTNWCKAFGRCPNSTIPFNPALFAECICLNEYAQLSSKTQA
FT TIVSNASRSDPDWRYTVVRIFAKSQHKVNDGSIFGSWKACQTLALMHDFVILTLGPVKK
FT YQRIIDHYDRPNFIYTHCGKTPSELSAWSHSFLKGDAYICNDYTSFDQSQHGEAVIFES
FT LKMHRVGIPRHLIDLHIYLKTNVSTQFGPLTCMRLTGEPGTYDDNTDYNLAVIFSQYVI
FT SDHPIMVSGDDSVICGHPPINPNWPAVEKLLHLRFKTEETSLPLFCGYYVGPTGCCRNP
FT FALFAKLMISYDKGNLFETLPSYLYEFSIGHRLGDVVRLLFPDHLLKYYSACWDLFCRK
FT CTASQKLILSFEPIPPSFFSKLASTSRWVSKVLFSDLPTKIRDMLISSSKLPSYHQDPR
FT VQYLESELLTSFNHGRLSTN"
FT CDS 5487. .6065
FT /codon_start=1
FT /db_xref="GOA:P20124"
FT /db_xref="HSSP:1QJZ"
FT /db_xref="InterPro:IPR000574"
FT /db_xref="InterPro:IPR008975"
FT /db_xref="UniProt/Swiss-Prot:P20124"
FT /note="virion protein (VP)"
FT /protein_id="AAA46797.1"
FT /translation="MEDSQPIKVRQPSISAPGTHLSPNPGQQSPSMVVPFQVSVSDLGV
FT SEVSAQITLSSDPTLAQLTSIYRMASIVECEAVLFPNSTSSKNPVHCDLIWVPSNSSAS
FT PKTILQTYGGNRFTVGGPITSNQIISFPLRLDSVNPIIKDSVLYLDSPRLLAFSPAPPE
FT TQSIPSASLLIRGKLRLSSILVQPLLTSS"
XX
SQ Sequence 6211 BP; 1330 A; 2160 C; 973 G; 1748 T; 0 other;
J04375 Length: 6211 May 10, 2005 10:09 Type: N Check: 6922 ..
1 gtaatttttt gccagttcaa ccctttcgag ccttgaactt tacctttacc
51 ttttcttttt cttcctttga cttcgctctc cggcccgaag ttttccttga
101 acactccctc ctagagccag tgttcttttt tttcccttct ttaattcaca
151 ccctttcgag cctgtgaatt catgtctaat ggccttcgaa ctagctttga
201 acgcattagc ctcttccacc cacaaggatt catctctgaa tccagtgctg
251 aattctgctg ttcagcccct tcaaacctct ctccaaaatt tcccatggat
301 cattgggaaa gaacatcttc cttttctcct cgctgcaggc atcccgacct
351 ccgggttcgg ctgcaatcct cacccccacg cggtccacaa agtgatcgaa
401 accttccttc tcttcaacca ctggagcttc atggcgaccg tccaggcctc
451 tgtgatgttc atgaaaccct ccaagttcaa aaaattggcc tccgtcaatc
501 caaacttctc cgaactagta aactaccgtc tcaccgcggc agattccgtt
551 cgatacccct ccacctccac ctctcttccg aagtacgaaa tcgttttcat
601 gcacgatgcc ctgatgtact tcaacccctc tcagatacta gacctcttca
651 ttcagtgccc ctctcttcag aggctccact gcagtctagt tgttccccca
701 gaaagctcct tcaccgacct ctctctccac ccaaacctct acacctacac
751 aatttccggc aacactcttc attatgttcc agaaggtcac catgccggaa
801 gttacgacca acccctcgat gcaatcagtt ggctcaagct caacagcatc
851 cactcccctc atctaaacct ctcagtctcc aagctggaat cttggggccc
901 tgtccactcc ctcctcataa caagaggtct ccctcacctg ccgtcatccg
951 aaaaacagca ggtatccttc cacatcccaa actgcctccc tcttcccgag
1001 gccaccttcc ttcatcaacc tcttcgtcat cgcctcgttc caaccgaggt
1051 gtacgatgct ctgttcacct acacaagagc cgttcgaact ctcaggacct
1101 cagatcctgc cgggttcgtt cgaactcact ccaacaaacc ccaatactca
1151 tgggtcactt caagagcttg ggacaatctc caaacctacg ctcttttgaa
1201 cgcccccgtc cgacccgtcg ttctcttcga cttcttcctc tctcccctca
1251 aaaagttcca actgttcatg tcccaacaca tcaacagtct ggtcataaag
1301 gcccttccct tcctcggcct cattccccct ctcgtcaaac tcaccacgct
1351 cggcttcccc attccaagcg tgtctcactt ccaaattctg ttcttcacca
1401 tgatcggccc aagcggccaa ttcattttgg aagctttccc atcaatgttg
1451 cacccagcca tctcttacct cgaaagttgt ggtctcgtgc ctcgtctccc
1501 cccacctgta gcccaacaac ttcaaaccat gggcatcctg aggaagcgct
1551 ccgctttctc cctaaaaacc tccctcagca ctgtcaaatg gccctcatgg
1601 aaaattactg ctctcatttc agctctccca gcagctctgt cagttttcct
1651 gaagaccatc agtcctctct ccctccaatc tctacacgat gggtacaatg
1701 ctcatctcca tccttctccc ttcaatcttt cctggtcatt ggagacattc
1751 catgtccaat ctccttcccc ctttcttccc ctcagtctca ctcctccgag
1801 tccctcagag gagatagccc tccctcctcc catcttccga gttccccctc
1851 ctctgcctgc tcaggagact ccttcgcctc ctgctccagc tttggtccct
1901 ccaacccaac ctcctcagcc tcagccttgg gaggaaatca tttcaacttt
1951 tctttcttct cttaatgctt cctcacacaa gccctctcct tcctccgccc
2001 ctctcgaatc accttctccg atccccgagt cgttcgaagt cctggctgaa
2051 gctcctcaac atcaaagatc tatcaacgaa tgtggagctc taaaccaact
2101 tcctcttcct gttccatccc ccctccagaa ctccactaat ccaaaacctc
2151 cctttccctc ttcagatctg ctatctgaca tgtcttgcac aggtccggta
2201 gttgaatttg aaaccatctt cccagctgag taccacatgt ccaatggcag
2251 ttttccaact cgcctccgag gtcatcccag gtcctcagcc cccttccccc
2301 aaaaacactg ccttctcaca gctgttgctt cccaactctc atacactgaa
2351 caccaacttt gggaatttct ttgcgacatg ctccctgact cccttctaac
2401 caattccgaa gttgaaaact ttggcttgag caccgatcat ttgacctgct
2451 taagctatcg tcttcacttc gaatgcatca ttcacacctc acattccaca
2501 atcccctatg gcatcaagaa agcttccaca gtcatccaga tttcctacat
2551 cgatggcccc cccaaacact ttaaagcttt catcaaactt gctgccgccg
2601 ctcctggctc caacccctcc aaatccaatc ttgttcgagc cgcccttcgt
2651 ttcaagtaca atgatgcttt ccttcctttc tgggatgctc atcaacacac
2701 catttctgtt ccccatgcta aaaaccttat ttcgaacatg aaaaacggtt
2751 ttgatggcat cacctcccaa ctttctggcc cttctaacaa gtcccccaag
2801 atgaaactct tggaacttga tgccaccatc gacgtctcct tccctcgcaa
2851 atgcgatgtt atccacattg ctggcttccc cggctgtgga aaatcccatc
2901 caatccaaaa gctgctccaa actcccgcct tccgccactt tcgtctctcc
2951 gtcccaacta atgaacttcg gtcagaatgg aagcgtgatc tgaaccttcc
3001 agagtccgaa gtttggcgcc tctgcacttg ggagactgct ctcttcaaat
3051 catccaacat tctcgttgtt gatgaaattt acaaactccc tcgtggctac
3101 ctcgacctca tcctccttgc tgacccttcc atccagcttg tcatcatgct
3151 tggtgatccc cttcaaggag agtaccattc ctcacaccct tcctcctcca
3201 acagccggct tgagtccgaa acaactagac tctccaaata catcgactgc
3251 tactgctggt ggacctatcg ttgtcctaaa gcagttgccg atttatttgg
3301 cgtgaaaacc ttcaattcca acgaaggatt catccgcgct gttctctctc
3351 atccccccaa ccttccaaac ttggtgaaca gcatagcaac tgctaacacc
3401 atgcagagct taggccacca cgccctcacc atttccagct ctcaaggcat
3451 gacctactct gaccccgtca ctgtccttct tgaccgccac tcccttctta
3501 tcactccaca aactgcactc gttgctctca ctcggtccag gtccggcatc
3551 tactttattg gtagcatgta cacggcttct ggctccgctg ggacctctta
3601 catgttctct tgtgccctca cgggtcttcc tgttgacatg atgagtgctt
3651 tccctctctt ccacactctc cctctcatcc acgaaccaat ccgctcccgc
3701 cgccaccgcc tcgtcgcagg tcacacccca tctctccatg tgcccccttc
3751 caacaagtgg cctcaccgtc tccaccttcc ccctcacatt ccaacttctc
3801 attccaaaga tgtgatcctg gctcacggaa tcgttgcttc caacgcccct
3851 gagcgaagac tgaccactct tcacctccct ccaactcgcc ttcccctgca
3901 cttcgatctc gaaagctgca atccctcaac tgtgtccact tcttccactt
3951 ccaactctga agtacctttc acccatgctt tcctgggtga gagttttgaa
4001 gaactggccg ctcacttcct ccctgctcac gatccggatt tgaaagaagt
4051 tactgttggt gatcaaacca gtcagcaatt tccttatttg gatcaaccct
4101 acaccctctc ttgtcagcct tcttctcttc tcgccgccag ccacaagcct
4151 gcttctgacc ccactcttct cattttttcc atctccaaga gactccggtt
4201 cagagcctct tcttcaccct atgctttcac ccccaacgac ctcatcctcg
4251 gccaccttct ttacaccaac tggtgcaagg cctttgggcg ttgtcccaat
4301 tccaccattc ctttcaaccc tgcacttttt gccgaatgca tttgcctcaa
4351 tgagtacgcc caactttctt ccaaaactca agctaccatt gtctccaatg
4401 cctccaggtc tgatccagac tggagataca ccgtcgtccg catattcgct
4451 aagtcccaac ataaagtgaa cgacggtagt atatttggtt cttggaaagc
4501 atgccagact ctagctctga tgcatgattt cgtcatcctc actcttgggc
4551 ctgtcaaaaa ataccaaaga atcatagatc attatgacag acccaacttc
4601 atctacaccc actgtggaaa gactccttca gaactcagtg cttggagcca
4651 ttctttcctc aaaggcgatg cttacatctg caatgactac acttcatttg
4701 atcaaagtca gcacggggaa gccgtgatct ttgaatcttt gaaaatgcat
4751 cgcgtgggta ttcctcgtca tctcattgac ctccacatct atctcaaaac
4801 caacgtctcc actcagttcg gtcccctcac ttgcatgcgc ttaactggcg
4851 aaccagggac ctatgatgac aatactgact acaaccttgc agtcatcttt
4901 tctcagtatg tcatttctga tcacccaatc atggtttctg gtgatgactc
4951 cgtgatttgc ggccaccccc ccatcaatcc aaattggcca gctgttgaaa
5001 aacttctcca tctccgcttc aagactgagg aaacctctct tcctctgttt
5051 tgcggttact acgttggccc aaccggctgc tgccgcaacc cctttgccct
5101 tttcgccaaa ttgatgatat cgtacgacaa gggcaatctc ttcgaaaccc
5151 tcccctcata cctctatgag ttttcaattg gccacagact tggcgacgtg
5201 gttcgcttgc tcttccctga tcatctcctc aagtactact cggcttgctg
5251 ggatttgttc tgcagaaagt gcactgcctc tcaaaaactc attctttcct
5301 tcgagcccat ccccccttct ttcttctcta aattggcctc cacatctcgc
5351 tgggtcagca aagttctttt ctctgatctt cctaccaaga ttcgagacat
5401 gctcatctct tcctccaagc tccccagcta ccatcaggac cctcgcgtcc
5451 agtacctaga gtctgaattg cttacctctt tcaatcatgg aagactctca
5501 accaattaaa gtgcgccaac cctccatctc tgctcctggg actcatctgt
5551 ctccaaaccc aggacaacaa tcccctagca tggtcgttcc tttccaagtt
5601 tctgtttcag accttggtgt ttctgaggtc tctgctcaga tcaccctttc
5651 ctccgatcca acccttgctc aactcacttc catttatcgc atggcctcca
5701 tcgttgaatg cgaagcggtt ctctttccta actccacctc ttctaagaat
5751 cccgttcact gcgatcttat ttgggtccct tcaaactctt ccgcttcacc
5801 caaaaccatc cttcaaacct atggcggcaa ccgatttaca gtcggcggtc
5851 ccataacttc caaccaaatc atttcttttc ctctccgtct tgattctgtc
5901 aatcccatca tcaaagatag cgtcctgtac cttgattctc caaggcttct
5951 cgctttctct cctgctcccc ctgagactca atccattcca tctgcttctc
6001 tcctcattcg cggaaagctt cgactttcct ccatccttgt tcagcccctc
6051 ctaacatctt cctgagctcg atccagcttc ataggatccg tccgtagttc
6101 ggggattggt tgccctaagc aacccgctta aatatgaccg gtgtcatagc
6151 ctctagcaca cagaggtcgc gtgggttcaa ctccccccct tttccgaggg
6201 tatcggaaac c