Sequence of DPV Cucumber mosaic virus

Cucumber mosaic virus isolate Bal-In capsid protein (CP) gene, complete cds.

ACC No: JF279609

Dated: 2011-07-26 | Length: 666 | CRC: 307259833

                
ID   JF279609; SV 1; linear; genomic RNA; STD; VRL; 666 BP.
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AC   JF279609;
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DT   26-JUL-2011 (Rel. 109, Created)
DT   26-JUL-2011 (Rel. 109, Last updated, Version 1)
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DE   Cucumber mosaic virus isolate Bal-In capsid protein (CP) gene, complete
DE   cds.
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KW   .
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OS   Cucumber mosaic virus (cucumber mosaic cucumovirus)
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Bromoviridae;
OC   Cucumovirus.
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RN   [1]
RP   1-666
RA   Geetanjali S., Mandal B., Kumar R., Srivastava P.S.;
RT   "Characterisation of two distinct Indian strains of Cucumber mosaic virus
RT   infecting tomato and subgroup-specific diagnosis based on complete RNA-3
RT   genome";
RL   Unpublished.
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RN   [2]
RP   1-666
RA   Mandal B., Geetanjali S.;
RT   ;
RL   Submitted (01-FEB-2011) to the INSDC.
RL   Plant Pathology, Indian Agricultural Research Institute, Pusa Campus, New
RL   Delhi, Delhi 110012, India
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FH   Key             Location/Qualifiers
FH
FT   source          1. .666
FT                   /organism="Cucumber mosaic virus"
FT                   /segment="RNA-3"
FT                   /host="muskmelon"
FT                   /isolate="Bal-In"
FT                   /mol_type="genomic RNA"
FT                   /country="India:Ballabgarh"
FT                   /isolation_source="muskmelon leaves showing mottling
FT                   symptoms"
FT                   /collection_date="2008"
FT                   /note="subgroup-IB"
FT                   /db_xref="taxon:12305"
FT   gene            10. .666
FT                   /gene="CP"
FT   CDS             10. .666
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="capsid protein"
FT                   /note="coat protein"
FT                   /protein_id="AEK69527.1"
FT                   /translation="MDKSESTSAGRNRRRRPRRGARSASSSADATFRVLSQQLSRLNKT
FT                   LAAGRPTINHPTFVGSERCRPGYTFTSITLKPPKIVRGSYYGKRLLLPDSVTEFDKKLV
FT                   SRIQIRVNPLPKFDSTVWVTVRKVPASSDLSVAAISAMFADGASPVLVYQYAASGVQAN
FT                   NKLLYDLSAMRADIGDMRKYAVLVYSKDDALETDELVLHVDIEHQRIPTSGVLPV"
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SQ   Sequence 666 BP; 152 A; 176 C; 160 G; 178 T; 0 other;

jf279609 Length: 666  26-JUL-2011  Type: N  Check: 1486  ..

       1  agtcgagtca tggacaaatc tgaatcaacc agtgctggtc gtaaccgtcg
      51  acgtcgtccg cgtcgcggtg cccgctccgc ttcctcctcc gcggatgcta
     101  catttagagt cctgtcgcaa cagctttcgc gacttaataa gacgttagca
     151  gctggtcgtc ctactattaa ccacccaacc tttgtgggta gtgaacgctg
     201  tagacctgga tacacgttca catcaattac cctgaagcca ccaaaaatag
     251  tccgagggtc ttattatggt aaaaggttgt tacttcctga ttcagtcact
     301  gagttcgata agaagcttgt ttcgcgcatt caaattcgag ttaatccttt
     351  gccgaaattt gattctaccg tgtgggtgac ggtccgtaaa gttcctgcct
     401  cctcggacct gtccgttgcc gccatctctg ctatgtttgc ggacggagcc
     451  tcaccggtac tggtttatca gtacgccgca tccggagttc aagctaacaa
     501  caagctgttg tatgatcttt cggcgatgcg cgctgatatt ggcgacatga
     551  gaaagtacgc cgtgctcgtg tattcaaaag acgatgcgct agagacggat
     601  gagctagtac ttcatgtcga cattgagcac caacgcattc ccacatctgg
     651  ggtgctccca gtctaa