Sequence of DPV Grapevine vein clearing virus
Grapevine vein-clearing virus isolate LBC0903, complete genome.
ACC No: JF301669
Dated: 2011-08-30 | Length: 7753 | CRC: 797454067
ID JF301669; SV 2; circular; genomic DNA; STD; VRL; 7753 BP.
XX
AC JF301669;
XX
DT 03-JUL-2011 (Rel. 109, Created)
DT 30-AUG-2011 (Rel. 109, Last updated, Version 2)
XX
DE Grapevine vein-clearing virus isolate LBC0903, complete genome.
XX
KW .
XX
OS Grapevine vein-clearing virus
OC Viruses; Retro-transcribing viruses; Caulimoviridae; Badnavirus.
XX
RN [1]
RP 1-7753
RX DOI; 10.1094/PHYTO-02-11-0034.
RX PUBMED; 21554183.
RA Zhang Y., Singh K., Kaur R., Qiu W.;
RT "Association of a novel DNA virus with the grapevine vein-clearing and vine
RT decline syndrome";
RL Phytopathology 101(9):1081-1090(2011).
XX
RN [2]
RP 1-7753
RA Zhang Y., Singh K., Kaur R., Qiu W.;
RT ;
RL Submitted (04-FEB-2011) to the INSDC.
RL William H. Darr School of Agriculture, Missouri State University, 9740 Red
RL Spring Road, Mountain Grove, MO 65711, USA
XX
RN [3]
RC Sequence update by submitter
RP 1-7753
RA Zhang Y., Singh K., Kaur R., Qiu W.;
RT ;
RL Submitted (26-AUG-2011) to the INSDC.
RL William H. Darr School of Agriculture, Missouri State University, 9740 Red
RL Spring Road, Mountain Grove, MO 65711, USA
XX
CC On Aug 26, 2011 this sequence version replaced gi:338777450.
XX
FH Key Location/Qualifiers
FH
FT source 1. .7753
FT /organism="Grapevine vein-clearing virus"
FT /host="grapevine (Chardonel)"
FT /isolate="LBC0903"
FT /mol_type="genomic DNA"
FT /country="USA"
FT /collection_date="Jun-2010"
FT /db_xref="taxon:1050407"
FT CDS 485. .1111
FT /codon_start=1
FT /product="hypothetical protein"
FT /note="ORF I"
FT /protein_id="AEI98821.1"
FT /translation="MQSIEQQQFEAEIESWERSERTPLHGYRDLVEYPRYERNQHFPSA
FT KFPCYHFVAEKDNVHATYTKGDRIPQLLNTLYDLQVNQCHNQAVIYDRIQLLSRYTVRK
FT GKPLPAIPEESVLKEPEESSTELKHQIELLRADLREIKANQSSLRLAISEIRESITDLT
FT ARESAPKPIEAETAYLTAQLKVQVQEIKTALTEIKTFARTLVPER"
FT CDS 1112. .1495
FT /codon_start=1
FT /product="hypothetical protein"
FT /note="ORF II"
FT /protein_id="AEI98822.1"
FT /translation="MSTWQIAAAAEEYKNAIKATATLTKDERAVGFVKPHEFEPNFSDT
FT NIQRQNNTLIHLLIQSLEEIKELRAQVQTLNDRIITLEKGKAPVTLPDNVVEQISTQLK
FT EAKFGQPKEGLVKGTKGTFRVWK"
FT CDS 1495. .7320
FT /codon_start=1
FT /product="polyprotein"
FT /note="ORF III"
FT /protein_id="AEI98823.2"
FT /translation="MSRSRTQTTELPRATRRSTSPVERLDDQIRGYRRMARARYLAEQR
FT IRRSFSRNYRETLERRLDPEAELQLSRRRRANLVPAEVLYSLNYNEPQNRVYQHYEEVR
FT SHVIDRQQDFRFIEEQSYRTLVQEGMQHIHPGMLMVRIQVLHRVDAGISAMIVFRDTRW
FT NDERQIISAMTVDMARGAQLVYAIPDLMMSIHDFYHHLQVSITTRGYGTGWVGGESNLI
FT VTRSLTGRITNTSQANFNYQIEGVADYLASHGVQSIPGQPWRDINQEGSWNLRPSSIQA
FT PTQVPTGLVSRQSATGNISLRFTGFQDQVQTVETEEESGMTDTGERVTHYALVGTFEWL
FT EECPSYQQRRNQETEENGWVKHVEGDKGFNFKVRMTPPAWSHDPQPIIATGWGDDFNNP
FT PPPPPPKTEEEEILELYPVRRRPDPVQIARKEKAAVFSQAVNTIFEHEGKDVSRMKPSG
FT EAPDSDPDSPVWKVKKSPYPHKPMKLKDEKGKSPFEDLELKQDLVQSWIAQLGSGSGSR
FT TEKPIFDTTSSDSDSDLSDVSSKVLAYAGVEEAVMEYPRRVKTATAKLADMEKAFAGET
FT TAAVGGDSEMTTGQSSRSTLIPPNEGGGPIRYPPAERPSTSASTYNTTAPPLFEGTVRP
FT GRYGRPLAPWSLPSAQHSQGALLILPPEVASHADAITTWETITLNHLMNISFDSLQDRV
FT DYIENLLGPREREAWVTWRMAYDTEYRQLVELSGEPRNVTSTIKRVLGINDPYTGTTHI
FT QNQAYADLERLQCKNLESVMPFLNSYFQLAAKSGKMWSSPELSEKLFRKLPPEIGPTIA
FT KEYAERYPGMLIGVNARIQFVSEYLQDLCKQADLQRKLKNLNFCKAIPIPGYYDQGVKK
FT KYGLRKSKTYKGKPHDSHVKVIKNKYKGAQGRKCKCYLCGIEGHYARECPKKHVRPERA
FT AYFEGMGLDVNWDVISVDPGDQDGSDICSISEGEAQHGMEDLAAFKAQLPYPVEAQYEQ
FT HQALVVIQTTFKKEDKPQGSWRMSKPIPETQQQCQHTWDDMYALAEGQQACSTCQTITV
FT LGRRATCTLCLLNLCSLCAGLDFGLKIVPKTATRADWKFQDRDSLIASLYEHNAFLLRQ
FT VEGLKQELQAAKEQLQLLHSVDMINLSDDGLENFSLEEKSFLRGGGGTSSSSIKISSTT
FT TPPGFPTTPNRFQPLAQEKLKGIQEDLSLAVQFDDVRQQEQAYTEMPRGAHNKLYHVVV
FT TFRIPDAKGQLLEFDINAIIDTGCTCCCINLTKVPDGAIENASIIQEVSGINSKTVVTK
FT KLRQGKMILAGNDFYIPYVSAFEMNMPGIDMLIGCNFIRAMKGGIRLEGTEVTFYKTIT
FT RIQTTLEPQKIAYLEELVEAEDLHYELAAASMPEPTAEGLRNTKLLAELKDQGYIGEEP
FT LKHWSKNRVRCKLDIINPDITIEAKPPGHLTLEDKVKYQKHIDALLDLGVIRPSKSRHR
FT SAAFIVASGTSVDPKTGKETRGKERMVIDYRMLNDNCHKDQYSLPGITSIIKSLGQAKI
FT FSKFDLKSGFHQVMMEEESIPWTAFISPAGLYEWLVMPFGIQNAPAIFQRKMDECFKGT
FT EDFIAVYIDDILVFSNSIREHEKHLQRMLSICKEHGLVLSPTKMKIAVPGIDFLGAHIR
FT NSRVSLQPHIIKKIADKKDDELMTLKGLRSWLGVINYVRQYIPKCGTLLGPLYAKTSEH
FT GDRRWHPKDWEIVRQIKKMVQSLPDLELPPPHAVIIIESDGCMEGWGGICKWKNSKGES
FT KGKERICAYASGKFPTVKSTIDAEIYAVMASLENFKIYYLDKREITIRTDCQAIISFYD
FT KTAIKKPSRVRWINFCDYITNTGIKVQFEHIKGQDNQLADQLSRLAQNVCAIQVIPESA
FT HEALSIILEQDCTAQELMAQFNSMLQANLRLNHGRPNTTWYSRTKPKKSKARKQAQVQL
FT RFDVSNDD"
XX
SQ Sequence 7753 BP; 2388 A; 1881 C; 1734 G; 1750 T; 0 other;
jf301669 Length: 7753 30-AUG-2011 Type: N Check: 4869 ..
1 tggtatcaga gctccagttt caaatctggg aaatctctac aattattcct
51 tcaagattat gatgaggaac taactctcat aatcgtgtag ggaatcgtta
101 gtaggatctc agaacaaggt tcttatcccc tcatactact gattctggta
151 tataggctgg aaacacgaca ctgttacgat cccacttctg ttggagtggt
201 agtagcccgt tgtgagacaa cgccacgtac cattttcagt tttcctagcc
251 caaatcccca tgaacagaac tcccacggtc aataagtttc aacaggatcc
301 ctagcccaac aatactgaaa gtcctaggac aggctgcgac gcgaagtacc
351 accagttcag gcgatgctgt tccgccgatt gtttgtggga aaactgcagt
401 aggagaggac ggacaactat tcaagggaac ggaacctgga gacaccggcc
451 gagttcttag taagcggttc aaggaaggag actgatgcaa agtatagaac
501 aacaacagtt tgaggcggag atagaatctt gggagagatc tgaacgcaca
551 cccctacacg gttaccgtga tcttgtggaa tatccccgtt acgaaagaaa
601 tcagcatttc ccatctgcaa agttcccctg ctaccacttt gttgctgaga
651 aagacaacgt tcacgccact tacaccaagg gagatagaat ccctcagctg
701 ctgaatacac tgtacgacct acaagtcaac cagtgtcata accaggcagt
751 gatctacgat cggatccaac tcctttcgag gtatacggtc cgaaagggta
801 agcctttacc ggctatccct gaggaatctg tcctcaagga accagaagaa
851 agctcaactg agcttaagca ccagatcgag ctccttcgag cagatctaag
901 ggagatcaag gctaatcagt caagcctccg acttgccatc tctgaaatcc
951 gtgaatccat cacagatcta acggcaagag aatcggcacc taagccgatt
1001 gaagcagaga cagcctacct gaccgcccag ctaaaggttc aggttcaaga
1051 gatcaaaaca gctttaacag agatcaaaac ctttgccagg actttggttc
1101 ctgaaaggta gatgtccacg tggcaaattg ctgctgccgc agaggaatac
1151 aaaaacgcca taaaggcaac tgcaaccctc accaaggacg aaagagctgt
1201 tggctttgtt aagccccacg agttcgagcc aaatttcagt gacaccaaca
1251 ttcaaaggca aaacaatact ttgatccact tgctaattca aagccttgaa
1301 gaaatcaaag agctccgcgc tcaggttcag accctcaacg atcgtattat
1351 aactttggaa aagggaaagg ctccagtcac tcttcctgat aacgtggtag
1401 aacaaatatc cactcaactc aaggaagcca agtttggaca accaaaagaa
1451 ggtttggtca aagggacaaa aggcaccttc cgggtctgga agtgatgtct
1501 aggtccagga ctcagaccac tgagttgcct cgtgcaacca gaagatccac
1551 tagcccagta gaaaggctag acgaccagat ccgcggctac cgacggatgg
1601 cccgtgcccg ctaccttgcg gagcaacgaa tacgtaggtc cttttcaagg
1651 aactacaggg aaactctgga aagacgccta gatccagagg ctgaactaca
1701 gctcagtcga agacgaagag ctaacttagt accagcagaa gtactatact
1751 ccctcaacta caatgaaccc cagaataggg tttatcaaca ctatgaagag
1801 gtgagatccc atgtcataga ccggcagcaa gatttccggt ttattgaaga
1851 acagtcctac cgcacccttg tgcaagaagg catgcagcat atccaccctg
1901 gaatgctgat ggtgagaata caagtgctac accgagtaga cgcaggaatt
1951 agcgccatga tcgtgttccg agacacgagg tggaatgatg aaagacaaat
2001 tatcagtgct atgactgttg atatggccag aggggcacaa ctagtctacg
2051 ccatcccaga tctcatgatg tcaatccatg atttctacca ccacctgcaa
2101 gtcagcatta ccaccagagg atacggtacc ggttgggtag gaggtgaaag
2151 caacctcata gtgactaggt cactcaccgg aaggatcaca aataccagtc
2201 aggccaactt caattatcaa attgaaggag tagctgacta cctggcaagc
2251 catggcgtgc agagtatacc aggacagcca tggagggaca taaaccagga
2301 aggatcctgg aacctaaggc cttcatcaat acaggcccct actcaggtcc
2351 ccacaggcct tgtctcaaga caatctgcca ccggcaatat cagcctaagg
2401 ttcactggtt ttcaggacca ggtccagacg gttgaaactg aggaagagtc
2451 tggtatgaca gacacaggag aaagggtaac tcattatgcc cttgttggaa
2501 ccttcgaatg gttggaggaa tgtccttcat atcaacaaag aaggaatcaa
2551 gaaacagagg aaaatggctg ggtgaaacat gtggaaggag ataaggggtt
2601 caacttcaaa gtccgtatga cccctccagc atggagccat gacccgcagc
2651 ccatcatagc tacgggatgg ggagatgatt ttaataatcc tccgccacct
2701 ccacctccta aaactgaaga ggaggaaata ttggagttat acccagtaag
2751 aagaagaccc gaccctgtgc agatagccag gaaagaaaag gcggcagttt
2801 tctctcaagc tgtcaacact atcttcgagc acgaagggaa ggatgtctca
2851 aggatgaaac catcagggga agcccctgac tcggatccag acagcccagt
2901 ctggaaggta aagaaaagcc cttatcctca taagccaatg aagctgaagg
2951 atgagaaggg taaaagtcct tttgaggact tggaactaaa acaagaccta
3001 gttcaaagct ggatagctca actaggaagt ggctcaggaa gcagaacgga
3051 gaaacctatc ttcgacacta ccagcagtga ctcagactct gatctgtctg
3101 atgttagctc gaaagtttta gcctatgctg gagttgaaga agcggtaatg
3151 gaatacccac ggagggtaaa aactgcgacg gctaagctag cagacatgga
3201 aaaggctttt gccggagaaa caaccgcagc agtaggagga gattcggaga
3251 tgacaactgg tcagtcttct agatctactc tcataccacc aaatgaagga
3301 ggaggaccta tacggtatcc accagcagaa agaccgtcca catcggcctc
3351 tacatacaac actacagccc cacctctttt tgaagggact gttaggcccg
3401 gaaggtatgg tcgccccttg gcaccatggt ctctaccatc agcacagcac
3451 tctcaaggag ctttgctgat cctccctcct gaagtagcaa gtcacgctga
3501 cgccatcact acatgggaaa caatcaccct aaatcatttg atgaatatat
3551 catttgattc cctccaagac agggttgatt acattgaaaa tctccttgga
3601 ccaagggaaa gagaagcttg ggtcacttgg agaatggcgt acgatacgga
3651 atacagacag ctggttgagc tctctggaga gccaagaaat gttaccagca
3701 ccatcaaaag agttctgggt atcaatgacc cttatacagg aactactcac
3751 atccagaatc aagcctatgc ggatcttgag cgcctgcagt gcaaaaatct
3801 ggaatcagta atgccattcc tgaactctta tttccaactc gcagctaaga
3851 gtgggaaaat gtggagtagc cctgaactct cagaaaagct tttcagaaag
3901 cttcccccag aaatcggtcc tactatagca aaggagtatg ctgagcgata
3951 ccctggcatg ttaatcggag ttaatgccag aatacagttc gtctctgagt
4001 atctccagga cctgtgtaag caagcagatc ttcaaagaaa attgaagaat
4051 ttgaatttct gcaaggcaat tcctattcct ggttactatg accaaggagt
4101 aaagaagaaa tacggcctac gcaaatccaa aacttataag ggtaaacctc
4151 atgactctca tgtcaaggtt atcaaaaata agtacaaagg ggcccaaggt
4201 cgtaaatgca aatgctacct ctgtggtatt gaaggccact atgctcgaga
4251 atgcccaaag aagcatgtca gaccagaacg tgcagcctac tttgaaggca
4301 tgggcttgga tgtcaactgg gatgtaataa gtgttgaccc aggagatcaa
4351 gatggatcag acatctgctc aatttctgaa ggagaagccc aacatggaat
4401 ggaggaccta gccgcgttca aagcccaact tccatatcca gtggaagccc
4451 aatatgagca gcaccaggcc cttgtggtta tccaaacaac ctttaaaaag
4501 gaagataagc cccaaggctc ttggcgcatg tcaaagccca ttcccgaaac
4551 ccaacagcaa tgccagcaca catgggatga catgtatgcc ctagcagaag
4601 gacaacaagc gtgcagcact tgccagacca tcactgtact tggtcgacgt
4651 gctacttgca ccctttgcct actcaacctc tgctcactat gcgctggctt
4701 agacttcggt ctcaaaatag ttcctaagac tgccacacgt gctgactgga
4751 aattccaaga tcgcgattct cttatcgctt ccctctacga gcacaatgca
4801 ttccttctac gtcaagttga aggattaaaa caggaactcc aagctgctaa
4851 agaacagctt caactgctac actcggttga catgatcaac ctctctgatg
4901 atggattaga gaatttttcc cttgaggaaa aatccttttt aagaggggga
4951 gggggtacca gtagcagttc aatcaaaatc tcatcaacaa ccacaccccc
5001 tggttttcct acaacaccca acagattcca gcctcttgcg caggaaaaac
5051 ttaaaggaat acaggaagac ctatctctgg cagtacagtt tgatgatgtc
5101 agacaacaag aacaggcgta tactgaaatg cctcgaggag ctcacaacaa
5151 gctataccac gtggtggtaa ccttcagaat ccctgatgct aagggacagc
5201 tccttgaatt tgatatcaac gccatcatag acactggctg cacctgttgc
5251 tgcatcaacc tcacaaaggt acccgatgga gcaattgaga acgcctccat
5301 aatccaagaa gtctctggga ttaacagcaa aacagtagtc accaagaaac
5351 tcaggcaagg caagatgatc ctcgcaggga atgatttcta cattccttat
5401 gtctcagcct ttgagatgaa catgcctgga attgacatgc tgataggctg
5451 caacttcatc agagcaatga agggaggaat acggttggaa ggaactgagg
5501 tcaccttcta caaaaccatc accaggattc aaactaccct ggaacctcaa
5551 aagatagcat acttggaaga gctagtagaa gcagaagacc tacactatga
5601 gctcgcagct gcaagtatgc ctgagcctac tgctgaagga ctcagaaaca
5651 ccaaactcct agccgaactg aaagatcaag gctacatagg agaagagcct
5701 ctcaaacact ggtcaaagaa tagggtacga tgcaagcttg acatcattaa
5751 ccctgatatc accattgagg caaagccacc tggacaccta actctggagg
5801 ataaggtcaa atatcagaag cacattgacg ccctcctaga ccttggagtc
5851 atcagaccta gcaagagcag acataggtcc gcagctttta tagttgcctc
5901 tgggacctct gtagatccca aaactggcaa agaaacccgc ggtaaggaaa
5951 gaatggtgat tgactaccgc atgctaaacg acaactgcca taaggatcaa
6001 tacagtctgc ctggaatcac ctccatcatc aaatctcttg ggcaagctaa
6051 aatcttcagt aaatttgacc tgaagtctgg cttccaccaa gttatgatgg
6101 aagaagaaag catcccctgg actgctttta tcagccccgc aggtctatac
6151 gaatggctag tcatgccatt tggaatccaa aatgcacctg ccatatttca
6201 aagaaagatg gatgaatgct tcaaaggaac cgaggatttc atcgccgtct
6251 atattgatga tattctggta ttctcaaact ccatcagaga gcatgaaaag
6301 cacctgcaga gaatgctgag tatctgcaag gaacatgggc tcgtccttag
6351 cccaacaaaa atgaagattg ctgtcccagg aattgatttc cttggtgccc
6401 acatcagaaa tagcagagtg agtctgcaac cgcacatcat caagaagatt
6451 gctgacaaga aagatgatga gctgatgacc ctcaaaggcc tcagaagctg
6501 gttaggggta atcaactatg tcagacaata catccctaag tgcggaacac
6551 ttctcggtcc tctctatgct aaaacctctg agcatggtga tcgaagatgg
6601 caccccaaag actgggaaat tgtaagacag atcaagaaga tggtccaatc
6651 ccttcctgat ctagaacttc ctccacccca cgcagttatc atcattgaat
6701 ctgacggttg catggaagga tggggaggaa tctgcaaatg gaagaactca
6751 aagggggagt ccaaaggcaa ggagcgaatc tgtgcttacg ccagcggaaa
6801 attcccaaca gtcaaatcca ccatagatgc tgaaatttat gcagtcatgg
6851 catccctgga gaattttaag atttactatc ttgataagcg ggaaatcacc
6901 attagaactg actgccaggc cataatcagc ttctatgata agacggctat
6951 caagaaaccc agcagagttc gctggattaa tttttgtgat tacatcacta
7001 acacagggat taaagtccag tttgaacata taaaaggcca agataatcag
7051 cttgcagacc agctctcaag gcttgcccag aatgtctgcg caatccaggt
7101 catccctgaa tcagcccatg aagccctcag tataattcta gaacaagact
7151 gcacggccca agaattaatg gcccagttca actctatgct tcaggcaaac
7201 ctcaggctca accatggaag gcccaacact acttggtact caaggaccaa
7251 gcccaagaaa tccaaagccc gtaagcaagc ccaagtccag ctacgctttg
7301 acgtaagcaa tgacgactag ggataataat ggaggaatct tgtaaggaca
7351 gcacatggtc cttctttcct cttttctttt gtaatttttg tcttcttgtg
7401 tcggcaaccg ctccttttgt aaagaggaat ctgcttttga gctgtcgatg
7451 gggcccaatg tgtgtacccg agctctaaaa gtaacttacc tctagttgct
7501 tttgtaaacc ttagttaagt ttgttttcct ttctccccta taaaagggag
7551 cccctcagtt gtaagaaggc atcgaacaga gcaatacctc tgagcgcttc
7601 cttctctcta gatttcaagt tttcttgtat ctttccagtt ccagtgttct
7651 taatgcaatt tgaagtcttc atactctatg tcattctgtt catagttctt
7701 ttccgctacc tatactctgt gatccaaatt tttaatttgt gatctgttta
7751 atc