Sequence of DPV Blueberry red ringspot virus

Blueberry red ringspot virus isolate BRRSV13 transcriptional activator gene, complete cds.

ACC No: JF303675

Dated: 2011-06-21 | Length: 1284 | CRC: 1787126048

                
ID   JF303675; SV 3; linear; genomic DNA; STD; VRL; 1284 BP.
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AC   JF303675;
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DT   20-FEB-2011 (Rel. 107, Created)
DT   21-JUN-2011 (Rel. 109, Last updated, Version 5)
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DE   Blueberry red ringspot virus isolate BRRSV13 transcriptional activator
DE   gene, complete cds.
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KW   .
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OS   Blueberry red ringspot virus
OC   Viruses; Retro-transcribing viruses; Caulimoviridae; Soymovirus.
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RN   [1]
RP   1-1284
RA   Kalinowska E., Paduch-Cichal E., Chodorska M., Sala-Rejczak K.;
RT   "Molecular characterization of Blueberry red ringspot virus";
RL   Unpublished.
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RN   [2]
RP   1-1284
RA   Kalinowska E., Paduch-Cichal E., Chodorska M., Sala-Rejczak K.;
RT   ;
RL   Submitted (03-FEB-2011) to the INSDC.
RL   Department of Plant Pathology, Warsaw University of Life Sciences
RL   WULS-SGGW, Nowoursynowska 166, Warsaw 02-787, Poland
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RN   [3]
RC   Sequence update by submitter
RP   1-1284
RA   Kalinowska E., Paduch-Cichal E., Chodorska M., Sala-Rejczak K.;
RT   ;
RL   Submitted (02-MAY-2011) to the INSDC.
RL   Department of Plant Pathology, Warsaw University of Life Sciences
RL   WULS-SGGW, Nowoursynowska 166, Warsaw 02-787, Poland
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RN   [4]
RC   Sequence update by submitter
RP   1-1284
RA   Kalinowska E., Paduch-Cichal E., Chodorska M., Sala-Rejczak K.;
RT   ;
RL   Submitted (04-MAY-2011) to the INSDC.
RL   Department of Plant Pathology, Warsaw University of Life Sciences
RL   WULS-SGGW, Nowoursynowska 166, Warsaw 02-787, Poland
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CC   On May 4, 2011 this sequence version replaced gi:331703007.
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1284
FT                   /organism="Blueberry red ringspot virus"
FT                   /host="Vaccinium corymbosum (blueberry) Darrow"
FT                   /isolate="BRRSV13"
FT                   /mol_type="genomic DNA"
FT                   /country="Poland"
FT                   /collection_date="2010"
FT                   /db_xref="taxon:172220"
FT   CDS             1. .1284
FT                   /codon_start=1
FT                   /product="transcriptional activator"
FT                   /db_xref="UniProtKB/TrEMBL:F1JYN9"
FT                   /protein_id="ADX60607.2"
FT                   /translation="MEGAIKTLENQISTKEQSFQAKKQKLAELEAEINNLRSTLAILSG
FT                   DSSKLSPSAPEEKKYSVLANIEEVNKQVATARGKKEYYVIFNGPMKGIYDEWHKAAPHI
FT                   QGQSNIIHKKYPTIDEAKKALGGSYAAITNAPASPKDSKVLLGRFKVPSVPTIDSIQTI
FT                   ESKMKALKVTQKKYNDYMEILYNYKDQHKLLHFYPKYRDTIGYKAIILPEASALTTYEL
FT                   FKNGLADTIYFSDSKVFNDFPERIKQTINNYFKRFAKERPCYIKLFSTHPTFSIQGEED
FT                   MPSYAVLQIGISNGDMPLMDTLHMPVPKHEELKQINLQNFIGVINHLSNLTANIKMLYK
FT                   SDTMIIYSKATKEIEPDQEAVFIEFEKNFIENKIPKMTGEMKKELCNHMTKEDHPGHYC
FT                   QYCPFIQQDDKKSASSEDEEKITMEVEE"
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SQ   Sequence 1284 BP; 524 A; 253 C; 221 G; 286 T; 0 other;

jf303675 Length: 1284  21-JUN-2011  Type: N  Check: 8426  ..

       1  atggaaggag ctataaaaac attggagaat caaatcagca ccaaagagca
      51  atcatttcaa gcaaagaagc agaagctagc agaactcgaa gcagagatca
     101  acaatctcag atcaacatta gccatactca gtggagatag tagtaaacta
     151  tcaccatcag ccccagaaga aaagaagtat tcagttctag ccaatattga
     201  agaagtcaac aaacaagttg caacagccag aggcaagaag gaatattatg
     251  tcatttttaa tggacccatg aaagggatct atgacgaatg gcataaagca
     301  gcaccacaca ttcaaggaca atccaacatc attcacaaga aatatccaac
     351  cattgacgaa gcaaagaagg cccttggagg aagctacgca gcaatcacca
     401  acgcaccagc atcaccaaaa gattcaaaag tactattggg aagatttaaa
     451  gtcccttcag taccaacaat tgattcaatc caaactattg aatcaaaaat
     501  gaaagcatta aaagtaaccc agaagaaata taatgattat atggagatcc
     551  tctacaatta caaggatcaa cataaattat tacatttcta ccctaagtac
     601  cgagatacaa ttggatacaa agcaataatc ctaccagaag catcagcact
     651  gaccacctat gaattgttca aaaatggact agctgacact atctattttt
     701  cggactcaaa agtattcaat gatttccctg aaagaatcaa gcaaaccatc
     751  aacaactatt tcaagaggtt cgccaaagaa agaccatgct acatcaagtt
     801  attcagtact catccaacct tcagcattca aggagaagaa gacatgccca
     851  gttatgcagt actacagatc ggaatcagca atggagatat gcctttaatg
     901  gatactcttc atatgccagt acccaagcat gaggaattaa aacagatcaa
     951  tctacagaat ttcattggag taattaatca tttatctaac ctgacagcaa
    1001  acatcaaaat gctgtataaa tcagatacaa tgattatcta ttccaaagca
    1051  accaaggaga ttgaaccaga tcaagaagca gtatttattg aatttgaaaa
    1101  gaattttatt gaaaataaaa ttccaaaaat gacgggggag atgaagaaag
    1151  aattatgcaa tcacatgacc aaggaagatc atccaggaca ctactgtcaa
    1201  tattgtccat tcattcagca ggatgataag aagtcagcat caagtgaaga
    1251  cgaagaaaag atcaccatgg aagtggaaga ataa