Sequence of DPV Fig badnavirus 1
Fig badnavirus 1 isolate Arkansas 1, complete genome.
ACC No: JF411989
Dated: 2012-07-25 | Length: 7140 | CRC: -685096719
ID JF411989; SV 1; circular; genomic DNA; STD; VRL; 7140 BP.
XX
AC JF411989;
XX
DT 02-MAR-2012 (Rel. 112, Created)
DT 25-JUL-2012 (Rel. 113, Last updated, Version 2)
XX
DE Fig badnavirus 1 isolate Arkansas 1, complete genome.
XX
KW .
XX
OS Fig badnavirus 1
OC Viruses; Retro-transcribing viruses; Caulimoviridae; Badnavirus.
XX
RN [1]
RP 1-7140
RA Laney A.G., Hassan M., Tzanetakis I.E.;
RT "An integrated badnavirus is prevalent in fig germplasm";
RL Phytopathology 0:0-0(2012).
XX
RN [2]
RP 1-7140
RA Laney A.G., Hassan M., Tzanetakis I.E.;
RT ;
RL Submitted (18-FEB-2011) to the INSDC.
RL Plant Pathology, University of Arkansas, 495 N Campus Dr PTSC 217,
RL Fayetteville, AR 72703, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .7140
FT /organism="Fig badnavirus 1"
FT /host="fig"
FT /isolate="Arkansas 1"
FT /mol_type="genomic DNA"
FT /country="USA"
FT /collection_date="05-May-2008"
FT /db_xref="taxon:1034096"
FT CDS 217. .648
FT /codon_start=1
FT /product="hypothetical protein"
FT /note="ORF1"
FT /db_xref="UniProtKB/TrEMBL:H8Y6I2"
FT /protein_id="AEF56562.1"
FT /translation="MSEKWERSIQDWYNNSRTANLEYLDLAEKEKPTNSHLYHNLAVVY
FT DRLNLQSRVNLKNLKGILERVEKQERKLESLELAVRNLTQVFVENKPLTTTEVRRLVYE
FT ISQQPKLVEQEALRLTEELRQKLERVEAIVKKVESWTSS"
FT CDS 645. .1052
FT /codon_start=1
FT /product="hypothetical protein"
FT /note="ORF2"
FT /db_xref="UniProtKB/TrEMBL:H8Y6I3"
FT /protein_id="AEF56563.1"
FT /translation="MSSYIVSQGTNSYKEAIKATEGIESPAAGFVRPADFQGGTSAARV
FT QIKQNNTLIQLLIQIAESLKDIREEQRVLKEEVRQLQKDKAASITEELVERLQSLSLGV
FT PEKKVAEKKRTFRVFKDPLRILEEEKEKLPK"
FT CDS 1049. .6562
FT /codon_start=1
FT /product="polyprotein"
FT /note="ORF3"
FT /db_xref="GOA:H8Y6I4"
FT /db_xref="UniProtKB/TrEMBL:H8Y6I4"
FT /protein_id="AEF56561.1"
FT /translation="MNRSRTVTQQLPAVSTRRREEINRDQPLFEDQIRDYRRNQRRRFV
FT AEQAVRRTMGRMRGRRYNQTLEQIVDPEVELNQSMQERANLVPAEVLYRSRRDNINHQI
FT YNHRSEEAMLCVGEQQDRMFIQPNSFQELQRSGMQFIHLGVLQVRLQILHRADGGTMAL
FT VVFRDNRWQGDQSIFAISEVDLTRGSQIVYVIPDTMMIIGDFYRNVQISIQTSGYENWQ
FT NGEANLLITRGMTGRLSNTPNVGFAYRISHVTDYLASRGVQALPGRRYRSEMLRGRNWI
FT IRQPQIQAAMMPRNVETRNLIDGTISARSADYTQAPEPRQPHYNEQDEEVASDEEELAE
FT TQQHIVAMLRFPDYVEIQEFKPKYKEQYDKYKREQGWDTLGEPSGKYDYYVRYTAPPAT
FT TPIEDIQPTGWEEEPKWDDSPDEKSLATIRFEEYKEEESQSDEEHYQPDAEAEFDYPLK
FT RIHYLNPFSEGGGKDDHLNSEEMDYPQRMKKIEKLLSTSEVTSPYRPPEDAAMGRPSYP
FT PARTIPGGGASSSAEPPRFDAARTRFKGGYNDEMWTLPSAQQKNGAMFVIPEQLGLFND
FT AFSRWESVTKNHVATQGFTDTRDKIKYMENLLGEIEKLIWIQWRMTYATEYEALVAIGE
FT GRDGTQNILSQMRRVFSLEDPAQGSTVIQDEAYRELERMSCTDVKYIIPFLNEYMRLAA
FT KTGRLFLGGELSEKIWMKMPGDLRKTIKEDFDNKYPGVVSGVVPRVLFAYKFLEKECRD
FT AAFKRSLKNLSFCSSIPIPGYYKNTGKKYGVRRSKTYKGKPHESHARIEKRKHLVRNKR
FT CKCFLCGQEGHFARKCPNDKRSSKRMAMFENLEIPEDCDIVSVEEGEDMSDAIYSISEG
FT EDGADELQKSLQTLEIVLMLGEIDGGYRPQIKLPEEQMNCVHNWIHNGDIFVQRAVHCS
FT FCRRESIKRARIHCPLCLLTACNLCGPYYLKIEVPVEPAPSTPINPRRIIQEQHNYIGW
FT CEVEIERLNKEVKHYKGLYEALLMEKSLRKDYEELKEGDKERRKGIMIQEPEEVNYLGE
FT DEKILAAGTEEKKKFVKNMLYNFDIEFEIPDVSRFRVRAILDTGASTCCINEGAVPKEA
FT LEESPYEVQLNGVNSVQKTKKKLKYGRMMIGMNTFRIPFTYSLPLVIGDNIQMIVGCNF
FT IRAMYGGVRIEGNEVTFYKNLTRISTSPEVSVNSLDEEVCEEEYLQVQEMVICNIGESR
FT KSFLKKFRPLLEELKEAGFIGENPLQHWKKNGILCQLDIKNPDFIIEDRPLKNLTPQMK
FT ESFKKHIKVLLDLGVIRASKSRHRTTAMLVNSGTTVDPKTGKEIKRKERMVFNYKRLND
FT ITHKDQYSLPGINTILKKVGNSKIFSKFDLKSGFHQVAMHPDSIEWTAFWVPDGLYEWL
FT VMPFGLKNAPSVFQRKMDECFKGTEDFIAVYIDDILVFSENEKDHAKHLKAMLEICKRN
FT GLVLSPSKMKIAVQEVEFLGAQIGNQRIRLQPHVIKKIVEFNEAELKEKKGMRSWLGIL
FT NYARAYIPNLGRLLSPLYAKTSPTGDKRMNAQDWKLVAQIKEEVQKLPDLELPPEDCFI
FT ILETDGCMTGWGGICKWKPKRNDPRRMEKVCAYASGKFSPIKSTIDAEIHAVMNTLEKL
FT KIYYLDKKELIIRTDCQAIISFFNKSALNKPSRVRWVAFTDFITGIGINVEFEHIDGRD
FT NVLADSLSRLINSFFLTEWSLKKEEAVAELEKLMEDKQCRKQLLPLINKMTNCFNNTRT
FT LLRKEKGSFDQEEYLLPETMNSENNSGRLKKNLQEEPLKPWNNTGRFTHLKQPNVHHGV
FT HPEGMGIIGLIACQALGDMTQD"
XX
SQ Sequence 7140 BP; 2429 A; 1313 C; 1741 G; 1657 T; 0 other;
jf411989 Length: 7140 25-JUL-2012 Type: N Check: 954 ..
1 tggtatcaga gctagttatg agtgagtagg ttcttataag gtattcgggt
51 aaacagggaa agatttatta tgcctagatt gatttgataa tcttgtttct
101 cagatctctg agttgtagta tctaaaagga aaaagtcctt gggcactata
151 tctggttaag gcaggaggcc gtgtgatacc agtgaaaccc tgaggtgatc
201 ctgatggata tgagtcatgt ctgagaaatg ggaaaggtca attcaggatt
251 ggtataataa ttctagaact gcgaaccttg aataccttga tttagcagaa
301 aaggaaaaac caacaaattc tcacctttac cataatctag cagtagttta
351 cgatagacta aacttgcaat ctcgtgttaa cctcaaaaac cttaagggta
401 ttttagaaag agtggaaaaa caagagagaa aacttgagag tttagaacta
451 gcagtaagga accttaccca agtttttgtt gaaaataagc ctttaacaac
501 aactgaagtt agaaggcttg tttacgaaat ctctcagcaa ccaaagcttg
551 tagagcagga ggctctaagg ttaactgaag aacttcgtca aaaactcgaa
601 agagttgagg cgatagtaaa gaaagttgaa agttggacct cttcatgagt
651 agttatattg tctcccaagg gacaaatagc tacaaggagg ccataaaagc
701 tactgaagga atagaatccc cagcagcagg gttcgtgaga ccagccgact
751 tccagggagg aacatcggca gcgagggttc agattaagca gaataatacc
801 cttattcagc ttctaatcca gatcgctgag tccctgaagg acatccgaga
851 agagcagcga gtcctaaagg aggaggttag gcaactgcag aaggacaaag
901 cagcttcaat cacagaagag cttgtggaaa gacttcaaag tctctcgtta
951 ggagtcccag aaaagaaggt agctgagaag aaaagaactt ttagggtatt
1001 caaagaccct ttaagaatcc ttgaagagga aaaagaaaag ctgccaaaat
1051 gaacaggtcg agaacggtga ctcagcagct gccagctgtg agtaccagac
1101 ggagggaaga aattaacagg gatcaacctc tgttcgagga tcagatccgt
1151 gactaccgga ggaatcaaag gcgaaggttt gtagctgaac aagccgtaag
1201 acgaaccatg ggaagaatgc gaggacgacg atacaaccaa actctggagc
1251 agatcgtaga tccagaggta gagctgaacc aatctatgca ggaaagagcg
1301 aacctagtac ctgcagaagt tctgtaccgc tcaagaagag acaacataaa
1351 ccatcagatc tataatcata gatccgagga agcgatgctt tgtgtaggag
1401 aacagcaaga caggatgttt atccaaccta acagcttcca agaactacag
1451 aggagtggta tgcagttcat acatctggga gttttgcaag taagactcca
1501 gatactgcat agggcagatg gaggaacaat ggccttggta gtcttcagag
1551 ataaccgatg gcaaggagat cagtcaatct tcgcaatctc agaagttgac
1601 ttgactagag gatcgcaaat agtatacgtg atacctgaca cgatgatgat
1651 tatcggtgac ttctacagaa acgttcagat ctctatccag accagtggat
1701 atgagaattg gcagaatgga gaggcaaatt tgctgatcac aagaggcatg
1751 acgggaaggt tatccaacac tccaaatgtt ggatttgctt acagaataag
1801 ccatgtgacg gattacctag caagcagggg agtccaagct ttgccgggaa
1851 gaagatacag atcggagatg ctacgaggaa gaaactggat cataaggcag
1901 ccacagatcc aggcggcaat gatgccaagg aacgtggaaa caaggaacct
1951 gatagatgga acaatctctg caagatctgc agattacact caggcaccag
2001 aaccacgaca accccattac aatgagcagg acgaagaagt ggcgagtgat
2051 gaggaagagc tggcagaaac tcaacagcac atagtagcaa tgctgcgatt
2101 tccggattat gtggagatac aggagtttaa gccaaagtac aaagagcaat
2151 acgacaagta caaaagggag cagggctggg ataccctggg agaaccaagc
2201 ggaaagtatg actactacgt ccgctacact gcacctccag cgacaacgcc
2251 gatagaagat attcagccaa caggctggga ggaggagcct aaatgggatg
2301 attcacccga cgagaaatca ttagcaacaa ttcgattcga ggaatacaag
2351 gaagaagaat ctcaatcgga tgaagaacat tatcaaccag atgctgaagc
2401 agaatttgac tacccgctaa aaaggattca ttacctaaat cctttttcgg
2451 aaggtggtgg gaaagatgac catttaaatt ctgaagaaat ggactacccg
2501 caaagaatga agaaaataga aaagttacta tccaccagtg aggtaactag
2551 tccatacaga ccaccagaag atgcagccat gggaagacca agttatccac
2601 cagctaggac aataccagga ggaggggcaa gctcaagcgc tgaacctcca
2651 aggtttgatg cagccagaac aagatttaaa gggggataca atgacgagat
2701 gtggacacta ccatcagccc aacagaagaa tggagccatg ttcgtaatac
2751 cagaacaact tgggctattc aatgatgctt tctctagatg ggaatcagtc
2801 actaaaaacc atgtggctac acaaggtttt actgataccc gagataaaat
2851 aaagtacatg gaaaatctac tcggagaaat tgagaagctg atttggatac
2901 agtggagaat gacgtatgcc acggaatacg aagccttagt agccatcgga
2951 gaaggcaggg atggtactca gaacattctc tcgcaaatga gaagagtgtt
3001 ttccttagaa gatccggcgc agggttcgac agtaatccag gatgaagcct
3051 acagagagtt ggaaagaatg tcttgtacag acgttaaata catcattcca
3101 tttctaaatg agtatatgcg tttggcagca aagacgggaa ggctattctt
3151 aggaggagaa ctatctgaga agatctggat gaagatgccc ggagatttaa
3201 gaaaaacaat aaaagaagac tttgacaaca aatacccagg agtcgtatca
3251 ggggtggtac ccagggtatt atttgcttac aagttcttgg agaaggaatg
3301 cagagatgca gcattcaaga ggtccctaaa gaacctgtca ttttgtagtt
3351 caattcctat accaggatac tataaaaata caggcaagaa gtatggagtg
3401 cgaagatcca agacgtacaa aggcaagcct cacgagagcc atgctaggat
3451 tgaaaagcga aagcacctgg tccgcaacaa aagatgcaag tgcttcctat
3501 gtggacaaga aggtcatttt gcaagaaagt gtcctaatga taaaaggagc
3551 tctaaaagga tggctatgtt tgaaaatctg gaaataccag aagattgcga
3601 tatagtctct gtagaagaag gagaggatat gagtgatgcc atatactcaa
3651 tatccgaagg agaagatgga gcagatgagc tgcagaaatc actccaaaca
3701 ttggaaattg ttcttatgtt aggagaaatt gatggagggt accggccgca
3751 gatcaagctt cctgaggagc agatgaattg tgtccataac tggatacata
3801 atggggatat ctttgtacaa agagctgttc attgcagctt ctgcagaagg
3851 gaaagcataa aaagggcaag aatacattgt cctttgtgtc tcctaacagc
3901 ttgcaatctg tgcggacctt actacttgaa gatagaagta ccggtggaac
3951 cagcaccatc aaccccgata aatccgagaa gaattattca ggagcagcac
4001 aactacatcg gatggtgtga agtagaaata gagagactaa acaaggaagt
4051 gaagcactac aaagggctat acgaagcctt actaatggag aaatccttaa
4101 ggaaagacta cgaggagctg aaagaaggag ataaggagcg aagaaagggc
4151 ataatgatac aagaaccaga agaagttaac tatctgggag aagatgagaa
4201 gattcttgca gcaggaacag aggaaaagaa gaaattcgtc aagaatatgc
4251 tttataactt tgatattgaa tttgagattc cagatgtctc aagattcaga
4301 gtaagagcaa ttcttgatac aggagcttca acatgctgta tcaatgaagg
4351 agcagttcca aaagaagccc tcgaagaaag cccttatgaa gttcagctga
4401 atggggtcaa ctctgtgcag aaaacaaaga agaagctcaa gtacgggaga
4451 atgatgatcg ggatgaatac gttcagaatc ccttttacat acagtctgcc
4501 actggtcatc ggagataaca tccagatgat tgtaggttgt aacttcatca
4551 gagcaatgta tggaggagtg agaatagaag ggaatgaggt aaccttttac
4601 aagaacctca cacggattag cacatcccca gaagtctcgg tgaattccct
4651 ggatgaagaa gtttgcgaag aagaatattt gcaggtgcag gagatggtga
4701 tctgcaacat tggagaaagc cgaaaatcat ttcttaagaa gttcaggcct
4751 ttgctggaag aacttaagga agcagggttt ataggagaaa atccattaca
4801 gcattggaag aaaaatggga ttttatgcca acttgatatc aaaaatcctg
4851 atttcataat tgaagatagg ccactgaaga atttaacgcc acagatgaag
4901 gagtccttca agaagcatat caaggttttg ctggatttag gagtcatcag
4951 ggcaagtaaa agccgccaca gaacgacggc aatgctagtc aactcaggaa
5001 caacggtgga tccgaaaaca gggaaggaga tcaaaaggaa ggaaagaatg
5051 gtcttcaact acaaaaggtt gaatgacatc actcataagg atcagtatag
5101 tcttccagga ataaatacga tcctcaagaa ggttggaaat agcaagatat
5151 tcagcaagtt tgatctaaag agcggatttc accaagttgc tatgcatcct
5201 gactcaatag aatggacagc tttttgggtc ccagacggat tgtatgagtg
5251 gcttgtcatg ccattcggac tcaaaaacgc tccttctgtt tttcaaagaa
5301 agatggatga atgcttcaaa gggacagaag attttattgc agtctacatt
5351 gacgatattc ttgttttctc tgaaaacgag aaagatcatg cgaagcactt
5401 gaaggccatg ttggagatct gcaaaagaaa tgggttagtt ctaagcccat
5451 ctaaaatgaa gatagcagtc caagaggtgg aatttcttgg agcccaaatc
5501 ggaaatcaaa ggatccgact tcagccacat gttataaaga agatcgttga
5551 gttcaatgag gctgagttga aggagaaaaa gggcatgaga tcatggttag
5601 gaattctcaa ctatgctcgc gcatacattc ctaacttggg ccgcctttta
5651 agcccactct atgccaaaac aagtccaact ggagataaga ggatgaatgc
5701 ccaggattgg aagctcgtgg cccaaataaa agaagaagtc cagaagctgc
5751 cagatctgga gctaccaccc gaggattgtt tcatcattct tgaaacagac
5801 ggctgtatga ctggttgggg aggaatttgt aaatggaagc ccaaaagaaa
5851 cgacccaaga aggatggaga aagtttgcgc ctatgctagt gggaagttta
5901 gtccaatcaa gtcaaccatt gatgccgaaa tccatgcagt catgaacact
5951 ctggaaaaat taaagattta ttatcttgat aaaaaggagt tgatcatcag
6001 aactgactgc caagctatca tcagcttctt caataaatcc gccctaaata
6051 aaccctctag agtgagatgg gtagccttta cggattttat cacagggata
6101 ggaattaatg tggagttcga gcatatagat ggaagggata atgtgcttgc
6151 tgatagcctt tcaaggttaa ttaacagttt ctttcttaca gaatggagtc
6201 tgaaaaagga ggaagcagta gcagagctag agaagcttat ggaagacaaa
6251 caatgcagga agcaactcct accattaatc aacaaaatga cgaactgttt
6301 caacaatacc agaaccttgc tgaggaaaga gaaaggatcc ttcgatcagg
6351 aggaatatct tttgccagag acaatgaatt cagaaaacaa ctcagggagg
6401 ttgaagaaga atctgcaaga agagccatta aagccctgga acaatacagg
6451 cagattcaca cacttaaaac agcccaatgt gcatcatgga gttcacccgg
6501 aagggatggg aattattggt ctgattgctt gccaagcgtt aggcgatatg
6551 acgcaagatt agaaaaggtc ctacaagact tgaaggacgc gtcagctgac
6601 agcctaaagt tccgcatttg aagcatgatg ggcccagaaa agtggttgag
6651 gcgtctcact ataatcgatg cccttatctt ttcctttgtc attttgtaat
6701 aatggaatcg tctttttgac ccaaaggctg ccgtccatgt gcagtgattc
6751 ctttagtttg cgtgttttat ccgcttacac ggattgtcct ttgtaaccac
6801 tttcacgtgg ttttgctttt ctttagtgcg cctcttttgc gcccttgttt
6851 ttagcgttag tacgctttga gtcaagtttc cttatcattt gggaatcttt
6901 tgagctgtcg atggggccca atgaagcacc cgagctcttt taattcctat
6951 ataaggagct ttagtttcgt tgcaaggcac acaacaatca agcaaccctt
7001 gagccttact tcgaaaagag tctgtaaaag tttagagtct gtaatcagtg
7051 tgaagtttga agaaataaat tagaggtaat tcagtttaaa atctctttta
7101 tttcttgttt tcgatccatt ttatttgggg gacacacaaa