Sequence of DPV Blueberry red ringspot virus
Blueberry red ringspot virus isolate Coville 546 from Slovenia, complete genome.
ACC No: JF421559
Dated: 2011-10-06 | Length: 8299 | CRC: -1782325466
ID JF421559; SV 1; circular; genomic DNA; STD; VRL; 8299 BP.
XX
AC JF421559;
XX
DT 06-OCT-2011 (Rel. 110, Created)
DT 06-OCT-2011 (Rel. 110, Last updated, Version 1)
XX
DE Blueberry red ringspot virus isolate Coville 546 from Slovenia, complete
DE genome.
XX
KW .
XX
OS Blueberry red ringspot virus
OC Viruses; Retro-transcribing viruses; Caulimoviridae; Soymovirus.
XX
RN [1]
RP 1-8299
RX PUBMED; 21796400.
RA Petrzik K., Pribylova J., Plesko I.M., Spak J.;
RT "Complete genome sequences of blueberry red ringspot virus (Caulimoviridae)
RT isolates from the Czech Republic and Slovenia";
RL Arch. Virol. 156(10):1901-1903(2011).
XX
RN [2]
RP 1-8299
RA Petrzik K., Mavric I.;
RT ;
RL Submitted (22-FEB-2011) to the INSDC.
RL Plant Virology, BC AS CR, Institute of Plant Molecular Biology, Branisovska
RL 31, Ceske Budejovice 370 05, CZ
XX
FH Key Location/Qualifiers
FH
FT source 1. .8299
FT /organism="Blueberry red ringspot virus"
FT /host="Vaccinium corymbosum (blueberry highbush); cultivar
FT Coville"
FT /isolate="Coville 546"
FT /mol_type="genomic DNA"
FT /country="Slovenia"
FT /collection_date="2009"
FT /db_xref="taxon:172220"
FT CDS 48. .608
FT /codon_start=1
FT /product="hypothetical protein"
FT /note="ORF B"
FT /protein_id="AEE01489.1"
FT /translation="MEIPDLSQLSNIVLTDNPGTNPGIPYKGKIISIPKNLLPEKTEYS
FT LAYDGSHEQRILPMLRFITAILNNQTEILSFLSINQIKSGTVFTEKYFEEQKNNISIQL
FT EQNRKNISQKIEELKGLYDKKQDTIIQHSNRIINLITEIEHKKDLDEIKNTLKEIKKEL
FT IDNNNQKEVKELIESLKDISDRI"
FT CDS 615. .1202
FT /codon_start=1
FT /product="hypothetical protein"
FT /note="ORF C"
FT /protein_id="AEE01490.1"
FT /translation="MTEGNGNGKLTERIENMILKYEELEKVVKQVSQDIHEIKEQVEVE
FT NDIKEFNKSKYFNNTIRGNAKPTEEMIIDNKPEPCYQTDSPFPHLYHTFDPQLNNITDM
FT LMYIIKNCCCKDKHEQKEKYPIIHPKILDEKQIKDLEEHIKELEEHRCITILDLKKYFG
FT NKVNEDKRPIEYIEDQPRPSYKGRKPLWPQIM"
FT CDS 1184. .2659
FT /codon_start=1
FT /product="coat protein"
FT /note="CP"
FT /protein_id="AEE01491.1"
FT /translation="MATNNVMEPEMIDQQIEEIRNIMNNLKIEKTEENEIIFGNESENS
FT DYDVRMDDIKQEPGTSNFEERWKRKRNSNYEYEPYNTDPFINAEDYGYKRGFYKNREGK
FT WKRPKESGPVTGRLDDGILNLDCLTNGEELLKQWTAKQSLSTQIDASIRDMDAENYNKY
FT LIYKTSGVVFNYIVDIDIPNISSMKNLEILEEIATRIYQEFLGGMSTQRATAADKHDQE
FT RVKYILHKMKICDMCEFEEFYCQFIHYYYMLESSERSAYMNVFIQKLPYPLSKTINDEF
FT QNQKNANLVPNTLGGIAKVIRAYILLQCTKEQEKMQLINVTKCCPKFEYIPHKFGCSPN
FT SSRRGRRRTKPKYSKYYKQRKYHTFKPWYKKKRYRMYKRKYQPKYKQRYWKNKSNQKYC
FT PKGKKDCKCWICQEDGHYANECPNKDKRRDKVKLLEQLSQVNLEPIENNEISEEELWYL
FT QTDDESEEENSSNESEQYFYQDNNQSEDDISIY"
FT CDS 2526. .4568
FT /codon_start=1
FT /product="reverse transcriptase"
FT /protein_id="AEE01492.1"
FT /translation="MKYQKKNYGIYKLMTSQKKKIVQMNQNNTFIKITISQKTILAYID
FT TGASLCLLPEYNLPKLLWKELKKPITIRVADKRELQITKVALMITIIIEKRKFLVPTIY
FT QFDSGVPMIIGNNFLRLYYPFCQYLSYITLRCPKMINQKQEVIKIPIHHSSQLIKAKLL
FT NLVTNLEEQLLMDQVNKILQERFSLDLLGEKNKNKELIEIKLKDPNAEIFVPNNIPYTQ
FT RDIEEFKEDMEDLLNKGLIRPSKSPHSAPAFYVENHSEIKRAKRRIVINYKAMNEATIG
FT TPKTLPRSDYIMNRLKGKIWFSTLDVKSAYWQLRLTEESKPLTAFSYPPQKHYEWNVSP
FT MGLKQAPGIFQEFMNRSLHNLEHICLVYVDDIIIFSEKSKSDHLTKVLQVLKRCENEGI
FT ILSQPKAKIAQKEIDFFGLHISEGEIILQPHILEKLVLFPDEIENRKQLQRFLGNLNYI
FT SEKGFIRDFAKYRKELQKKVSEKVPWKWTSYDTTQVQALKALCQRLPKLYNAKESDLLI
FT IATDASNGHWGAVMTAVTPVHINNYGISLEDLFPKEQHTAQALSSQYQFFGTKDFVQKE
FT LLTKYASGTFTDTEKRYPIHELETLAVLQTFRKWKVDLLTKPFILKTDSKYVTGFLRYK
FT IKANYNQGRLIRWQLELSQFNYRTFYIKGSENYGPDTLTREWKEL"
FT CDS 4553. .5836
FT /codon_start=1
FT /product="translational transactivator"
FT /protein_id="AEE01493.1"
FT /translation="MEGAIKTLENQISTKEQSFQAKKQKLAELEAEINNLRSTLAILSG
FT DSSKLSLSVPEEKKHSVLADIEEVNKQVALARSKKEYYVIFNGPMKGIYDEWHKAAPHI
FT QGKANIIHKKYPTIDEAKKALGGSYAAITNAPASPKDSKVLLGRFKVPSVPTIDSIQTI
FT ESKMKALKVTQKKYNDYMEILYNYKDQHKLLHFYPKYRDTIGYKAIILPEASSLTTYEL
FT FKNGLADTIYFSDSRVFNDFPERIKQTINNYFKRFAKERPCYIKLFSTHPTFSIQGEED
FT MPSYAVLQIGISNGDMPLMDNHHMPVPKHEELKQINLQNFIGVINHLSNLTANIKMLYK
FT SDTMIIYSKANKEIEPDQEAVFIEFEKNFIENKIPKMTGEMKKELCNHMTKEDHPGHYC
FT QYCPFLQQDDKKSASSEDEEKITMEVEE"
FT CDS 6337. .6798
FT /codon_start=1
FT /product="hypothetical protein"
FT /protein_id="AEE01494.1"
FT /translation="MSNQITLLNNYYLQYYIIGIVNERIRLILVDTGAAMSFIKQSFVH
FT QESLTPIQPYTVKGYLDHHTIGDKYLVEHSTNINVILSNTFNKTLLLKTTQTKADVLGA
FT EVLFGMDFLDSFESYSITKEQLILREGTITHYIPRITVDTETIRETLNY"
FT CDS 6801. .7910
FT /codon_start=1
FT /product="movement protein"
FT /protein_id="AEE01495.1"
FT /translation="MSSPIILDQAGIIQNQEQNQEQNQISRVNNQNQMSRTEDQNQSEE
FT IRHINQIFDIIQSNETNDYYGVDVQLERSKLKQIAKEGKLTLKSGQGIKSEGFLPSITR
FT KNILYLGKSTSEQPLEISTAVGQEALSLVNGKQIADRIAKMKQSDKEKIQYIHLSTIQI
FT LVKSTYASIDTPMDIIVIDNRIISKNKKEQVLGIIKGNLKYGVIKFDVSLHFAIPLVTR
FT NLSQSIGILYKFHRQDLMEKGDYPLSITYSVGYALSNSHHSVDYIDQEIIHIDDLFKNT
FT STKLVTFEKKNENANDIFKAPPVRMIKPREDISKPTITDVTDPLQPTTSSSIQLAPPPN
FT LHRKPESMQNLEKQIQELRRTVTNLNEKI"
FT CDS 7907. .8275
FT /codon_start=1
FT /product="hypothetical protein"
FT /note="ORF A"
FT /protein_id="AEE01496.1"
FT /translation="MSYQYRRGPYLKGSTKRCTLENIEPMKEILTTTKKEFLEQFPRSE
FT ERSKIIGNLQGLIDYLVKRQKREAENPELTIQEKILQRLNSIEEKLEKSNSFSSLFDDL
FT EETSHQTNQVNIPPSSEN"
XX
SQ Sequence 8299 BP; 3590 A; 1271 C; 1271 G; 2167 T; 0 other;
jf421559 Length: 8299 06-OCT-2011 Type: N Check: 2635 ..
1 tggtatcaga gcttgagcta caaaaagttc aaactcgaaa tatcttaatg
51 gaaattcccg atttatcaca attatcaaat atagtactca ctgataaccc
101 aggaaccaat ccaggaatcc cttataaagg aaaaattata agtataccta
151 agaatttact accagaaaaa actgagtatt cattagctta tgatggatct
201 cacgaacaac gaatattacc tatgttaaga tttattactg ctatattaaa
251 taatcaaact gaaatattaa gtttcttatc tattaatcaa ataaagtctg
301 gaacagtatt tacagaaaaa tactttgaag aacaaaagaa taatatatct
351 atacagcttg aacaaaaccg taaaaatata tcccaaaaaa tagaagagtt
401 aaaaggatta tatgataaaa aacaagatac tattatacaa cattcaaata
451 ggataataaa tctgataaca gaaatagaac ataaaaaaga cttagacgaa
501 ataaaaaata ccctcaaaga aataaagaaa gagttaattg ataataataa
551 ccaaaaagaa gttaaagaat taattgaaag tttaaaagat ataagcgatc
601 gaatataagt agaaatgaca gaaggaaacg gaaatggaaa attaaccgaa
651 agaatagaaa atatgatatt aaaatatgaa gaattagaaa aagtagtaaa
701 acaagtaagc caagatatac atgaaataaa ggaacaagta gaagtcgaaa
751 atgacataaa agaatttaat aaatcaaaat acttcaacaa tacaatccga
801 ggaaatgcta aacctactga agaaatgatt atcgataaca aaccagaacc
851 atgttatcaa accgattcac cttttccaca tctatatcac acctttgatc
901 cacaattaaa taatataact gatatgctta tgtatataat aaaaaattgc
951 tgttgcaaag ataagcacga acaaaaggaa aaatacccta taatacatcc
1001 taaaatatta gatgaaaaac aaataaaaga cttggaagaa catataaaag
1051 aactagaaga acaccgatgt ataaccattt tagatttaaa gaaatatttt
1101 ggaaataaag ttaatgagga taaaagacca atagaatata ttgaagatca
1151 gccaagacct agttataaag gaagaaaacc attatggcca caaataatgt
1201 aatggaacca gaaatgatag atcaacaaat cgaagagatt agaaatatta
1251 tgaataatct taaaatagag aaaactgaag aaaatgaaat aatatttgga
1301 aacgaatcag aaaatagtga ttatgatgta agaatggatg atataaaaca
1351 agaaccagga actagtaatt tcgaagaaag atggaaaaga aaaagaaatt
1401 caaactatga atatgaacca tataatacag acccatttat taatgcagaa
1451 gattatggat ataaaagagg attttataaa aatagagaag gtaaatggaa
1501 aagacctaag gaatcaggtc cagtaacagg acgattagac gatggaatat
1551 taaatctaga ttgtttaact aatggagaag aattattaaa acaatggaca
1601 gcaaaacaat cattatcaac acaaatagat gcttctatta gagatatgga
1651 tgcagaaaac tataataagt atctaatata taagacatca ggagtagtat
1701 ttaattatat agtcgatata gacataccca acataagttc tatgaaaaac
1751 ttagaaatat tagaagaaat agctacaaga atatatcaag aattcctagg
1801 aggaatgagc acacaaagag ccacagcggc cgataagcat gatcaagaaa
1851 gagtaaaata tatattacat aaaatgaaaa tatgtgacat gtgtgaattc
1901 gaagaattct actgtcagtt tatacattac tattatatgt tagaatcatc
1951 agaacgaagt gcatatatga atgtgtttat tcaaaagtta ccatacccat
2001 tatcaaaaac tataaatgac gaatttcaga atcaaaagaa tgcgaactta
2051 gtacccaata cattaggagg aatagctaag gtaataagag catatatatt
2101 attacaatgt actaaagaac aagaaaaaat gcaattaatc aatgtaacaa
2151 aatgttgccc aaaattcgaa tatataccac ataaatttgg ttgttcacca
2201 aattcttctc gaagggggag aaggagaact aaaccaaaat attcaaaata
2251 ttataaacaa cgcaaatatc atacctttaa accatggtat aaaaagaaaa
2301 gatatcgtat gtataaaaga aaatatcaac ccaaatataa acaaagatat
2351 tggaaaaata aaagtaatca gaaatattgc cctaaaggaa aaaaggattg
2401 caagtgttgg atctgtcaag aagatggaca ctatgcaaat gaatgcccta
2451 acaaagataa aagaagagat aaagtaaaat tattagaaca attatcacaa
2501 gtgaatctcg aacctataga aaataatgaa atatcagaag aagaattatg
2551 gtatttacaa actgatgacg agtcagaaga agaaaatagt tcaaatgaat
2601 cagaacaata cttttatcaa gataacaatc agtcagaaga cgatattagc
2651 atatattgat acaggtgcat cattgtgcct actaccagaa tataatctac
2701 caaaactatt atggaaagag ttaaagaaac ctattactat aagagttgct
2751 gataaaagag aattacagat tactaaagta gcccttatga ttaccataat
2801 aatagaaaaa aggaaattcc ttgtacctac tatatatcaa ttcgattcag
2851 gagtacctat gattatagga aataactttt taagattata ctatccattt
2901 tgtcaatatc tatcctacat aacattaaga tgtcccaaaa tgattaatca
2951 aaaacaagaa gtgattaaga tacccataca tcacagttca caactaataa
3001 aagcaaagtt acttaactta gtaacgaatc tcgaagaaca attattaatg
3051 gatcaagtta ataaaatatt acaagaaaga ttctcactag atttactagg
3101 agaaaagaat aaaaataagg aactaataga aataaaatta aaagacccaa
3151 atgctgaaat atttgtacca aataatatac cttatactca aagagatata
3201 gaagaattca aagaagatat ggaagatcta ttaaataaag gtttaattag
3251 accaagtaaa agtccacata gtgcgccagc attctatgta gaaaatcatt
3301 cagaaataaa aagagcaaaa agaagaattg taataaatta caaagctatg
3351 aatgaagcta ctattggaac acctaagaca ttaccaagat cagattatat
3401 aatgaataga ttaaaaggaa aaatatggtt ttcaacatta gatgtaaaat
3451 cagcctactg gcaattaaga ttaacagaag aatccaaacc attaacagca
3501 tttagttatc cacctcaaaa acattacgaa tggaatgttt cacctatggg
3551 attaaagcaa gctccaggta tctttcaaga atttatgaat agaagtttac
3601 ataatctaga acatatatgt ttagtatatg ttgatgatat cattatattt
3651 tcagaaaaaa gtaaaagtga tcatttaaca aaagtattac aagttttaaa
3701 aagatgtgag aatgaaggaa taattttatc acagccaaaa gcaaaaatag
3751 cacaaaaaga aatagatttc tttggattac atatttcaga aggagaaata
3801 atactacaac cacatatttt agaaaaatta gtattatttc ctgatgaaat
3851 tgaaaatcga aagcaattac aaagatttct tggaaattta aattatataa
3901 gtgaaaaagg atttataaga gattttgcaa aatatcgaaa ggagttacaa
3951 aagaaagtat cagaaaaagt gccatggaaa tggacttcct atgacactac
4001 tcaagtgcaa gcactcaagg cattatgtca acgattacca aaattataca
4051 atgctaaaga atcagatttg ctgataatcg ctaccgatgc tagtaatggc
4101 cattggggag cagttatgac agcagtcact ccagtacata tcaataatta
4151 tggaatatcc cttgaggatt tattcccaaa agagcagcat acagcgcaag
4201 cattatcatc tcaatatcag ttcttcggaa caaaggactt tgtccaaaaa
4251 gaattactta ctaaatatgc tagtggaaca ttcacggata ccgaaaaaag
4301 atatcctatc catgaattgg aaacattagc agtattacaa acttttcgaa
4351 aatggaaagt cgatttatta acaaaacctt ttattttaaa aacagattca
4401 aaatatgtta caggattttt acgatacaaa ataaaagcca attataatca
4451 aggacgattg attagatggc aacttgaatt atcacaattc aattatcgaa
4501 ctttttatat aaaaggatca gaaaattatg gccctgacac cctaaccagg
4551 gaatggaagg agctataaaa acattggaga atcaaatcag caccaaagag
4601 caatcatttc aagcaaagaa gcagaagcta gcagaactcg aagcagagat
4651 caacaatctc agatcaacat tagccatact cagtggagat agcagcaagt
4701 tatcactatc agtcccagag gaaaagaagc attcagttct agctgacatc
4751 gaagaagtca acaaacaagt tgcattagcc agaagcaaga aggaatatta
4801 tgtcattttt aatggaccca tgaaagggat ctatgacgaa tggcataaag
4851 cagcaccaca cattcaagga aaagccaaca tcattcacaa gaaatatcca
4901 accattgacg aagcaaaaaa ggcccttgga ggaagttacg cagcaatcac
4951 taatgcacca gcatcaccaa aagattcaaa agtactattg ggaagattca
5001 aagtcccttc agtaccaaca attgattcaa tccaaactat tgagtcaaaa
5051 atgaaagcat taaaggttac tcagaagaaa tataatgatt atatggagat
5101 cctctacaac tacaaggatc aacataaatt attacatttc taccctaagt
5151 accgagatac aattggatac aaagcaataa ttctacccga agcatcatca
5201 ctgaccacct atgaattgtt caaaaatgga ttagctgaca ctatctattt
5251 ttcggactca agagtattta atgatttccc tgaacgaatc aagcaaacca
5301 tcaacaacta tttcaagagg ttcgccaagg aaagaccatg ctacattaag
5351 ttattcagta ctcatccaac cttcagcatt caaggagaag aagacatgcc
5401 cagctacgca gtactacaga ttggaatcag caatggagat atgcctttaa
5451 tggataatca ccatatgcca gtacccaagc atgaggaatt aaaacagatc
5501 aatctacaga acttcattgg agtaattaat catttatcta atctgacagc
5551 aaacattaaa atgctgtata aatcagatac aatgattatc tattccaaag
5601 caaacaagga aattgaacca gatcaagaag cagtatttat tgaatttgaa
5651 aagaatttta ttgaaaataa aattccaaaa atgacggggg agatgaagaa
5701 agaattatgc aatcatatga ccaaagaaga tcatccagga cactactgcc
5751 aatattgtcc attccttcag caggatgata agaagtcagc atcaagtgaa
5801 gacgaagaaa agatcaccat ggaagtggaa gaataaaacg tcttcatcca
5851 tcactatcac gatgtagaca gcacaatgta aagctacggc tattattagg
5901 cttagaatct acgccaatgt aaagtagatt cccttatctt ttattttgta
5951 agtttgaagt ccggagttga gttccgtctg tggaattcct ctatataagg
6001 acgacctatc ctatgtttgt agtcagagtg ttttccatat gtgaataaac
6051 gtttatcgtt ttaaaggttt cgccctttca ctctccagtg ttgagttctt
6101 cgtaagaagt tctctgaaga gcacatccta tccctatata ccctatcctt
6151 acctatccgg taattctatc ccaaaagctt gttgcagaaa caaacttgca
6201 ggattcaaaa caggattcgt caaagaacag gtatatgcct aaatcatcac
6251 tattcatcac tattctatct ttatctgtgt gtacttatta atttcatcct
6301 atcaattttg ttattactat tttgtgttat catatcatgt caaatcaaat
6351 tactttgttg aataattact atctacagta ttatattatt ggaattgtaa
6401 acgaaagaat tagattaata ttggttgata caggagcagc tatgtccttt
6451 ataaaacaat cattcgttca tcaagaatca ttaacaccta tccaaccata
6501 tacagtaaaa ggatatttag atcatcatac aattggagat aaatatttag
6551 tagaacattc taccaatata aatgtcatat taagcaacac cttcaataaa
6601 acattattat taaaaacaac tcaaacaaaa gcagatgtat taggagcaga
6651 agtattattc ggaatggatt ttttagatag ctttgaatca tactcgatta
6701 caaaagaaca gttaatacta agagaaggaa ctattactca ttacatacca
6751 agaattacgg tagatacaga gactataaga gaaactttga attattaaag
6801 atgtcatcac ctatcatact agatcaagca ggaataatcc aaaatcaaga
6851 acaaaatcaa gaacagaacc aaatatcaag agtcaataat cagaatcaga
6901 tgtctaggac agaagatcaa aaccaatcag aagaaatcag acatattaat
6951 caaatctttg atattatcca atcaaatgaa acaaatgact attatggagt
7001 cgatgtccaa ctagaaagat ctaaattaaa acaaatagca aaagaaggaa
7051 aattaacatt gaaatcagga caaggaataa aatctgaagg atttttacca
7101 tctattacta gaaagaatat attatattta ggaaagtcta caagcgagca
7151 accattagaa attagcaccg cagtaggaca agaagcttta tcattagtta
7201 atggaaagca aatagcagac agaatagcaa aaatgaaaca atccgataaa
7251 gagaaaattc agtatataca cttgagcaca atacaaatat tagttaaatc
7301 tacctatgcc tcaatagata cacccatgga tattatagtt attgataata
7351 gaataatttc taaaaataag aaagaacaag ttctaggaat aattaaagga
7401 aatctgaaat atggagttat taagtttgac gtaagtttac acttcgccat
7451 accattagta actaggaatt taagtcaatc tataggaata ctatataagt
7501 ttcatagaca agatctaatg gaaaaaggag attacccact tagtatcacc
7551 tactctgtag gatatgcatt aagcaatagt caccatagtg ttgattatat
7601 agaccaagag attatacata tagatgacct atttaaaaat accagcacta
7651 aattagtaac gtttgagaaa aagaatgaaa acgctaacga tatatttaaa
7701 gcaccaccag taagaatgat caaacctaga gaggatatat caaaaccaac
7751 aataacagat gttactgacc cattacaacc aaccactagt agttctatcc
7801 aactagcacc tccacctaac ctacatagaa aaccagaaag tatgcagaac
7851 ctagaaaagc aaatacaaga attaagaagg acagttacaa acctcaatga
7901 aaaaatatga gttatcaata cagaagagga ccatatctaa aaggaagcac
7951 taagagatgt accctagaga atatagaacc catgaaagaa atattaacta
8001 ctactaagaa agaatttcta gaacaatttc ctagatctga agaaagatca
8051 aaaataatag gaaatttaca aggattaatt gattatctag ttaaaagaca
8101 aaaacgagaa gcagaaaatc cggaattaac catacaagaa aagatattac
8151 agagattgaa cagcattgaa gaaaaattag agaagtctaa ttcattttca
8201 tcactatttg atgatttaga agaaacttct catcaaacaa atcaggtcaa
8251 tattccgcca tctagtgaaa actagttagt tgaccgcccc ggtccgttt