Sequence of DPV Unnamed TGP carmovirus 1
TGP Carmovirus 1 isolate 06TGP01062 putative RNA-dependent RNA polymerases, putative movement protein 1, and putative movement protein 2 genes, partial cds; and putative coat protein gene, complete cds.
ACC No: JF437885
Dated: 2011-09-04 | Length: 3057 | CRC: 589844652
ID JF437885; SV 1; linear; genomic RNA; STD; VRL; 3057 BP.
XX
AC JF437885;
XX
DT 23-MAR-2011 (Rel. 108, Created)
DT 04-SEP-2011 (Rel. 110, Last updated, Version 2)
XX
DE TGP Carmovirus 1 isolate 06TGP01062 putative RNA-dependent RNA polymerases,
DE putative movement protein 1, and putative movement protein 2 genes, partial
DE cds; and putative coat protein gene, complete cds.
XX
KW .
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OS TGP Carmovirus 1
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae;
OC Carmovirus.
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RN [1]
RP 1-3057
RX PUBMED; 21762736.
RA Scheets K., Blinkova O., Melcher U., Palmer M.W., Wiley G.B., Ding T.,
RA Roe B.A.;
RT "Detection of members of the Tombusviridae in the Tallgrass Prairie
RT Preserve, Osage County, Oklahoma, USA";
RL Virus Res. 160(1-2):256-263(2011).
XX
RN [2]
RP 1-3057
RG Plant Virus Biodiversity and Ecology Consortium
RA Scheets K., Blinkova O., Melcher U., Palmer M.W., Wiley G.B., Roe B.A.;
RT ;
RL Submitted (01-MAR-2011) to the INSDC.
RL Biochemistry & Molecular Biology, Oklahoma State University, 246 NRC,
RL Stillwater, OK 74078, USA
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FH Key Location/Qualifiers
FH
FT source 1. .3057
FT /organism="TGP Carmovirus 1"
FT /host="Melilotus officinalis"
FT /isolate="06TGP01062"
FT /mol_type="genomic RNA"
FT /country="USA"
FT /lat_lon="36.85 N 96.41 W"
FT /isolation_source="upper leaves"
FT /collection_date="02-Jun-2006"
FT /db_xref="taxon:944580"
FT CDS <1. .>224
FT /codon_start=1
FT /product="putative RNA-dependent RNA polymerase"
FT /db_xref="GOA:F2YSA8"
FT /db_xref="InterPro:IPR002166"
FT /db_xref="UniProtKB/TrEMBL:F2YSA8"
FT /protein_id="ADZ73471.1"
FT /translation="TYLYGARLTNGLKIGVHRNDFPNLRRGVMERVYYVENSETKQLQS
FT PITPVDGIYRSMKYIRLKLGGYIGLHSRTP"
FT gap 225. .1263
FT /estimated_length=1039
FT CDS <1264. .1467
FT /codon_start=1
FT /product="putative RNA-dependent RNA polymerase"
FT /db_xref="GOA:F2YSA9"
FT /db_xref="InterPro:IPR002166"
FT /db_xref="UniProtKB/TrEMBL:F2YSA9"
FT /protein_id="ADZ73472.1"
FT /translation="KGMGGRTRGTHSISERTRYSFYLAFGITPDEQRAFEDDWERETIV
FT WEWAPDGFVAANHACLQLISQS"
FT CDS 1440. .>1534
FT /codon_start=1
FT /product="putative movement protein 1"
FT /db_xref="UniProtKB/TrEMBL:F2YSB0"
FT /protein_id="ADZ73473.1"
FT /translation="MSTVDKPIIEVGLPQTNIVEDTATKRGRTKNG"
FT gap 1535. .1652
FT /estimated_length=118
FT CDS <1653. .1779
FT /codon_start=2
FT /product="putative movement protein 2"
FT /db_xref="UniProtKB/TrEMBL:F2YSB1"
FT /protein_id="ADZ73475.1"
FT /translation="NRVIALALLGAVLTSVGNSSTVYYINNSTNENKTNHIKIET"
FT CDS 1776. .2816
FT /codon_start=1
FT /product="putative coat protein"
FT /db_xref="GOA:F2YSB2"
FT /db_xref="InterPro:IPR000937"
FT /db_xref="UniProtKB/TrEMBL:F2YSB2"
FT /protein_id="ADZ73474.1"
FT /translation="MNGISQNDPKVVKAAEAGIPWAIKLRSRGWRSLRTNQKXXERAFV
FT GSSAPSVAIVPRVARLVRGNPQRTRRNPQQPGNAADSTTITKSDFVADVIGNTTEAGTV
FT TSWLINPSNXVAFPSLLNESARWEKYKITKFSIRFSSKCSEYTDGGVVVQFASDSTDAV
FT PTSKYGIMQSQCRADASAHGSVLLNCXVDTGVRFVRDSSADSGKVVDYGRVNLCAYGQK
FT AADPSIIGELFFEYTIVFSEARVNRGVTQYQYLLTDSVDGPSFASVTSTSAELTFTFNL
FT PGKYTFICSFTGTVSGLYAADLTYDWSVDNTTAVAGVVTVTSPGATLXWAIGATVTSLL
FT WQCNIF"
FT gap 2832. .2947
FT /estimated_length=116
XX
SQ Sequence 3057 BP; 470 A; 419 C; 467 G; 419 T; 1282 other;
jf437885 Length: 3057 04-SEP-2011 Type: N Check: 5938 ..
1 acttacctgt acggcgcacg attgacgaat ggcctgaaga ttggggtgca
51 tcgcaatgat tttcccaacc ttcggcgagg cgtcatggag cgcgtgtact
101 atgtagaaaa cagtgaaaca aaacaattgc agagccctat aacacccgtc
151 gatggtattt accggagcat gaaatacatc cgtctaaaac tcggaggata
201 catcggtctt cattccagga caccnnnnnn nnnnnnnnnn nnnnnnnnnn
251 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
301 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
351 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
401 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
451 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
501 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
551 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
601 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
651 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
701 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
751 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
801 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
851 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
901 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
951 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
1001 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
1051 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
1101 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
1151 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
1201 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
1251 nnnnnnnnnn nnnaaaggga tgggaggacg aacccggggc acacacagca
1301 taagtgaacg gacccgatac agcttctatc tggcgtttgg aatcacccct
1351 gatgaacaac gcgcatttga agacgattgg gaaagggaaa ctattgtctg
1401 ggagtgggcc cccgacggat ttgttgccgc aaaccacgca tgtctacagt
1451 tgataagcca atcatagaag taggtctacc gcaaactaac atagtagaag
1501 acacagcaac caagcgaggt aggacaaaga acggnnnnnn nnnnnnnnnn
1551 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
1601 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
1651 nncaaccgtg taattgctct agccctcttg ggcgctgtat taactagcgt
1701 aggtaattct agcaccgtat attacattaa taatagtacc aacgagaaca
1751 agacaaacca catcaaaatt gagacatgaa cggcatttca caaaatgatc
1801 ctaaagttgt taaggctgcg gaagctggaa taccgtgggc tattaaactg
1851 cgttctcgcg gttggcgtag tctgcgtact aaccagaagt nnncagaacg
1901 cgcttttgtg gggtctagtg ctccgagtgt tgctattgtc ccacgagttg
1951 ctcgactcgt tcgaggtaac ccgcaaagga ctcgtcgcaa tcctcaacaa
2001 ccaggcaacg ctgctgacag tactacgatc acaaaatcag actttgtcgc
2051 agacgttatc ggcaatacaa cagaggcagg aaccgtcacc tcatggctga
2101 tcaatccatc aaacgnngtg gcgtttcctt cattactcaa tgagagcgcc
2151 cgctgggaga agtacaagat cacgaagttc agcattaggt tcagttcgaa
2201 atgcagcgaa tacaccgatg gaggtgtggt tgtccagttc gcgtcggata
2251 gtacagacgc cgttccaacg agcaagtacg gcattatgca gtcgcagtgt
2301 cgagcagatg caagcgccca cggctcagtg ctccttaact gtnctgttga
2351 taccggngtg cggtttgtgc gagactctag tgcggatagt gggaaagtcg
2401 ttgactacgg tcgcgtcaat ctttgtgcgt atggtcagaa agcagcggat
2451 ccttctataa taggtgagct gttctttgag tacaccatcg tgtttagtga
2501 ggcgcgggtg aatcgcggcg tcactcaata tcagtacttg ctgactgaca
2551 gtgtcgacgg gccgtcgttt gcgagcgtca cgagcacgtc tgctgagctg
2601 acattcacat tcaatctgcc tggcaaatac acgttcatat gttctttcac
2651 cggaacagtg agcgggttgt atgctgcaga tctaacatat gactggagcg
2701 tagataacac cactgcagtg gctggtgtcg taacggtaac atcgcctggc
2751 gcaacacttn gttgggccat tggagcaact gttacgagcc tgttgtggca
2801 gtgtaacatc ttttagagta gactattcgg gnnnnnnnnn nnnnnnnnnn
2851 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
2901 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnacg
2951 ctggagaacg tacctgcnta aaatcttgga gctggaccaa gtgggcttgt
3001 taggtactcc ctagactttg tcttaaaggg aaccgtgtga ctcggttctc
3051 cttgccc