Sequence of DPV Indian cassava mosaic virus
Jatropha curcas mosaic virus-[Jalgaon] segment DNA-B, complete sequence.
ACC No: JF496656
Dated: 2011-08-30 | Length: 2723 | CRC: 1472060842
ID JF496656; SV 1; circular; genomic DNA; STD; VRL; 2723 BP.
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AC JF496656;
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DT 08-MAY-2011 (Rel. 108, Created)
DT 30-AUG-2011 (Rel. 109, Last updated, Version 2)
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DE Jatropha curcas mosaic virus-[Jalgaon] segment DNA-B, complete sequence.
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KW .
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OS Jatropha curcas mosaic virus-[Jalgaon]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
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RN [1]
RP 1-2723
RA Soni R.K., Mishra A., Gour H.N., Mishra A.A., John P., Dalvi V.S.,
RA Prabhudas S.K.;
RT "Strain of Jatropha curcas mosaic virus of Indian cassava mosaic virus";
RL Unpublished.
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RN [2]
RP 1-2723
RA Soni R.K., Mishra A., Gour H.N., Mishra A.A., John P., Dalvi V.S.,
RA Prabhudas S.K.;
RT ;
RL Submitted (03-MAR-2011) to the INSDC.
RL Jain Biotech R&D Lab, Jain Irrigation System Limited, Jain Hills, Sirsoli
RL Road, Jalgaon, Maharashtra 425001, India
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FH Key Location/Qualifiers
FH
FT source 1. .2723
FT /organism="Jatropha curcas mosaic virus-[Jalgaon]"
FT /segment="DNA-B"
FT /host="Jatropha curcas"
FT /isolate="Jalgaon"
FT /mol_type="genomic DNA"
FT /country="India:Maharashtra"
FT /collection_date="14-Feb-2009"
FT /PCR_primers="fwd_name: JBSF1, fwd_seq:
FT cggcccatgattcgtttgggc, fwd_name: JBSF, fwd_seq:
FT gccccgcaggggaaatgcttaat, rev_name: JBSR1, rev_seq:
FT cacagctagcgtttatggaccc, rev_name: JBSR, rev_seq:
FT accgattgcggagagagaaatccca"
FT /db_xref="taxon:1027399"
FT gene 379. .1161
FT /gene="BV1"
FT CDS 379. .1161
FT /codon_start=1
FT /gene="BV1"
FT /product="nuclear shuttle protein"
FT /protein_id="AED89159.1"
FT /translation="MRTGGYTPRSTPFTRDRRSYNAGKVRSYRVYRRRGPVRLLARRDL
FT FGDDKSRAFTYKTLSEDQFGPDFTIRNNNYKSSYISMPVKTRAQINNRVGDYIKLVNIS
FT FTGTVCIKNSQMDSDGSPMLGLHGLFTCVLVRDKTPRIYSATEPLIPFPQLFGSINASC
FT ADLSIQDPYKDRFAVIRQVSYPVNTEKGYHMCRFKGSRRFHGRYPIWVSFKDDGGSGDS
FT SGLYTNTYKNAILVYYVWLSDVSSQVDMYCKYLMRYIG"
FT gene complement(1170. .1994)
FT /gene="BC1"
FT CDS complement(1170. .1994)
FT /codon_start=1
FT /gene="BC1"
FT /product="BC1"
FT /protein_id="AED89160.1"
FT /translation="MENNSSNAAYLRSERVEYELTNDSTDVKLSFPSILDNKISLLKGH
FT CCKIDHIVLEYRNQVPINATGHVIIEIHDQRLNDGDSKQAEFTIPVQCNCNLHYYSSSF
FT FSMKDVNPWRVFYRVVDTNVVNGVHFCRIQGKLKLSTAKQSTDIQFRSPKIEILSKAFT
FT ERDIDFWSVGRIAQQRKLVQGPSLIGSRSMRYTPCSIGPNESWAVKSEVGPSEDRPYSH
FT LHRLNPDALDPGKSVSQIGSDHITREDLNDIISKTVDMCLNTSMQSHVSKNV"
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SQ Sequence 2723 BP; 689 A; 550 C; 623 G; 861 T; 0 other;
jf496656 Length: 2723 30-AUG-2011 Type: N Check: 6084 ..
1 accggatggc cgcgctccct gctttgtggt ggcccccccc cacttggaga
51 tgtcgccttc ttttggtggc cccccccacg tggagatgtc cccctctcat
101 aacgcgcccc tggagtttca atataatgat ggccccacta tgttggttag
151 aacgtgtgta acgtttgagg cctgatgctg gtgctgccac gtgtgcgtta
201 tgtctacttg ttctggaagt tatgtgtcat tgtcgtacgt gtggatatct
251 aaccgcatat tgtgcgaata gttgaaacgt ggcatgatct tgccgcttag
301 tgggaaccat ttaattatca tgttttgtat atatatgggt acgtggtatg
351 tgtgatctct gcagattgtg tttgcagaat gagaactggt ggctatactc
401 cccgttccac gccattcact cgtgaccgga gatcgtataa tgccggtaag
451 gttagatcct atcgtgttta tcgtcgacgt ggacctgttc gtttactagc
501 tcgtcgtgac ctgttcggtg atgataagtc acgtgcattc acatataaga
551 ccctatcgga ggaccagttt ggaccggact ttactatacg taacaataat
601 tataagtcat cgtatatatc tatgcctgtt aaaacacgtg cccagattaa
651 taaccgtgta ggtgactata tcaaacttgt aaatatatct tttacaggta
701 cagtgtgtat taaaaatagt cagatggact ctgatggaag cccaatgctg
751 ggtctacacg ggctgtttac ttgtgtgttg gttcgcgata agacccctcg
801 tatatattca gccactgagc ctctgatacc tttcccacag ttgtttgggt
851 ccataaacgc tagctgtgct gatttgtcca tacaggaccc atataaggac
901 cgttttgctg taattcgcca agtgtcctac ccagtgaata cggagaaggg
951 atatcatatg tgccgtttca aaggcagtcg tcgttttcat gggagatacc
1001 ctatctgggt tagttttaaa gacgatggtg gcagtggaga ctcgtctggg
1051 ttatacacta atacatataa aaatgccata cttgtatatt atgtatggct
1101 tagcgacgtt tcgtcccaag ttgacatgta ttgtaaatat ttaatgcgat
1151 atattggtta ataaaaatgt tatacatttt ttgatacatg gctttgcata
1201 ctcgtattta aacacatatc cactgtcttg ctaataatgt cgtttaagtc
1251 ttctcgtgtt atgtgatccg atccaatttg tgatacggat tttcctgggt
1301 ccaacgcgtc tgggttgagc cggtgtaggt gactgtatgg cctgtcttct
1351 gatggcccaa cttcactctt tacggcccat gattcgtttg ggcctataga
1401 acatggagtg tacctcatgg atctcgatcc tattagactt gggccctgta
1451 ccagttttct ttgctgggct atcctgccta ctgaccagaa atctatgtcc
1501 ctttctgtga aggccttgct cagtatctca attttgggag accggaactg
1551 tatgtcagtt gactgctttg cagtcgatag ctttagtttc ccttgaatac
1601 ggcagaagtg gactccgttg actacgttcg tgtctacgac tctgtagaac
1651 actctccatg ggtttacgtc cttcatggag aagaacgagg aagaatagta
1701 gtgtaggttg cagttgcatt gaacggggat agtgaactcc gcctgcttgg
1751 agtccccatc gtttaaccgt tggtcgtgaa tttcgatgat cacatgccct
1801 gtggcgttaa tcggtacctg gtttcgatat tcaagaacga tgtggtcaat
1851 tttgcagcaa tgacccttga ggagtgagat tttgttatcc aaaatggatg
1901 ggaagctcaa tttgacatct gttgagtcat ttgttagctc atactcaact
1951 ctctcggaac gaagatacgc tgcattacta ctattattct ccattggccc
2001 cgcaggggaa atgcttaata attaagctga gtgcagaata tatgaattaa
2051 tatacataaa gcaaagccca aagctgaata aatagctgaa ggcatatata
2101 ttatattatt gatgaaaggc tacaatagca tccacgtgtc agtggattac
2151 aagatattta aaaagctaca caaaatattg aaagaaattt gtgacgacgt
2201 cgtcttcaat gaatggaacc ggaaacccta atccattatg gacgactatg
2251 gttaagccct ctagtagtat gtcacatgtt tccggcgtca tatggtcgta
2301 attttgtgag actgtaaccc caatcttcca ttgtgaatgc catatgtatg
2351 gctctatcta tctcgggtaa cagatgcatg tcttcttctt cgaagtggag
2401 gtagtaggaa tttgaacccc tcgcgatgta aggttgatgt ctgctaacag
2451 ttttgaattc gacccagatc gaattcttga taatgcgact ggatagtcgc
2501 acatatttct tgctgtgttg caagacggaa tatttagttt gggaagacat
2551 ttgaaatatg agagtgagtg tgggtttaag aaggatcttc tctctcctca
2601 atcggtactc agctagcttt atctcccata ttaggtactc aatatataca
2651 tgagtaccat atggcagatg tgtaaataat gggaatataa tttgaatttg
2701 aaagcggcca tccgtataat att