Sequence of DPV Cotton leaf curl Burewala virus
Cotton leaf curl Burewala virus isolate In:Fazilka:2004 segment DNA A, complete sequence.
ACC No: JF502353
Dated: 2012-05-04 | Length: 2751 | CRC: -246271792
ID JF502353; SV 1; circular; genomic DNA; STD; VRL; 2751 BP.
XX
AC JF502353;
XX
DT 29-FEB-2012 (Rel. 111, Created)
DT 04-MAY-2012 (Rel. 112, Last updated, Version 2)
XX
DE Cotton leaf curl Burewala virus isolate In:Fazilka:2004 segment DNA A,
DE complete sequence.
XX
KW .
XX
OS Cotton leaf curl Burewala virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
XX
RN [1]
RP 1-2751
RX PUBMED; 22307170.
RA Rajagopalan P.A., Naik A., Katturi P., Kurulekar M., Kankanallu R.S.,
RA Anandalakshmi R.;
RT "Dominance of resistance-breaking cotton leaf curl Burewala virus (CLCuBuV)
RT in northwestern India";
RL Arch. Virol. 157(5):855-868(2012).
XX
RN [2]
RP 1-2751
RA Naik A.S., Katturi P., Rajagopalan P.A., Kankanallu R.S., Anandalakshmi R.;
RT ;
RL Submitted (05-MAR-2011) to the INSDC.
RL Plant-Virus Interactions Lab, Maharashtra Hybrid Seeds Co Ltd, Jalna -
RL Aurangabad road, Jalna, Maharashtra 431 203, India
XX
FH Key Location/Qualifiers
FH
FT source 1. .2751
FT /organism="Cotton leaf curl Burewala virus"
FT /segment="DNA A"
FT /host="cotton"
FT /isolate="In:Fazilka:2004"
FT /mol_type="genomic DNA"
FT /country="India"
FT /collection_date="01-Sep-2004"
FT /note="PCR_primers=fwd_name: CBVs-C1For_2533-2569,
FT rev_name: CBVs-V1Rev_528-494"
FT /db_xref="taxon:620894"
FT gene 132. .488
FT /gene="V2"
FT CDS 132. .488
FT /codon_start=1
FT /gene="V2"
FT /product="pre coat protein"
FT /protein_id="AFB83416.1"
FT /translation="MWDPLLNEFPDTVHGFRCMLAVKYLQLVEKTYSPDTLGYDLIRDL
FT ILVIRARNYVEATSRYNHFHARFEGTPPSQLRQPICEPCCCPHCPRHQSKSMGEQAHEQ
FT KAQDVQDVQKSRCS"
FT gene complement(283. .807)
FT /gene="C5"
FT CDS complement(283. .807)
FT /codon_start=1
FT /gene="C5"
FT /product="C5 protein"
FT /protein_id="AFB83418.1"
FT /translation="MNILHSRRTGLIIKHIKYLSKILRFINRSTISDQEKHHTIRVILR
FT LNVLIHPDLTQHINRLNTKSLTNSMGQPSTTSNITNTHYFTYMLNIMSGLKRLNLTWTF
FT TSSRNIWTSVHPVHPGLSVHGPVRPCFCFGDADNGGSSTAHIWAVEVETAAYLRSGRGN
FT DYICWSLRHNS"
FT gene 292. .1062
FT /gene="V1"
FT CDS 292. .1062
FT /codon_start=1
FT /gene="V1"
FT /product="coat protein"
FT /protein_id="AFB83417.1"
FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYVSRAAAPIVRVTKAKAWA
FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGTGLTHR
FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP
FT STATVKNVHRDRYQVLRKWYATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENH
FT SENALMLYMACTHASNPVYATLKIRIYFYDSVTN"
FT gene complement(1059. .1463)
FT /gene="C3"
FT CDS complement(1059. .1463)
FT /codon_start=1
FT /gene="C3"
FT /product="replication enhancer protein"
FT /protein_id="AFB83421.1"
FT /translation="MDSRTGEPITAAQAANGAYIWEVPNPLYFKIISNVNRPFTTNMDI
FT LTIRIQFNHNLRKALGIHKCFIAFRIWMTSQPPTGRFLRVFKTQVLKYLNNLGIVSINN
FT VVRAVDHVLWNVLQHVVFVNQSSSIKFNIY"
FT gene complement(1204. .1608)
FT /gene="C2"
FT CDS complement(1204. .1608)
FT /codon_start=1
FT /gene="C2"
FT /product="transcription activator protein"
FT /protein_id="AFB83420.1"
FT /translation="MQSSSLSKDHCTQLPIKVQHREAKRRNRRRRVDMNEGFSYYLSIN
FT CHNHGFTHRGTHHCSSSSEWRIYLGSSKSPLFQDHQQRQPSIHDEYGYTHDQDPVQSQP
FT EESVGDTQMFHSFPNLDDLTASDWSFLKGL"
FT gene complement(1502. .2596)
FT /gene="C1"
FT CDS complement(1502. .2596)
FT /codon_start=1
FT /gene="C1"
FT /product="replication associated protein"
FT /protein_id="AFB83419.1"
FT /translation="MAPPKRFKVQAILYVITYPQCSLTKEEALSQIQAINTPSKKKYIK
FT LCRELHEDGSPHLPVLIRFEGKFVCTNNKFFDLVSPNRAAHFHPNIQGAKSSSDVKAYI
FT NKDGDAFEWGEFQIDGRSPRGGQQTANGAYAAALNAGSKSEALRVLKELAPKIFGLQFH
FT NLNANLTRIFREAPAPYIFPFSPSSFDQVPEELGIWAIDNVVDAAARPLRPRSIVIEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKIYSNDAWYNVIDDVDPHFLKHFKEFMGAQRDW
FT QSNTKYGKPVQIKGGIPTIFLCNPGTNSSYKEFLNEEKNTALKNWALKNAIFITLEGPL
FT YSASNQSTAQGSEETQQEEESRYE"
FT gene complement(2242. .2682)
FT /gene="C4"
FT CDS complement(2242. .2682)
FT /codon_start=1
FT /gene="C4"
FT /product="C4 protein"
FT /protein_id="AFB83422.1"
FT /translation="MAPLDTINCIQSPINREKGHQLSLIDQSQWLPPNVLKYKLSFTSS
FT LIHSAHSLKRKHFPKFKPSTHPRKKNTSNSAESYTKMGALISLCSSGSRANSSAQITNS
FT STWFPPTGQHISIRTFRELNQAQMSRPTSTRTGTLSSGESFR"
XX
SQ Sequence 2751 BP; 710 A; 546 C; 650 G; 845 T; 0 other;
jf502353 Length: 2751 04-MAY-2012 Type: N Check: 7729 ..
1 accggagggc cgcccgtttt ttttgtgggc ccttccatta actcttgtcg
51 ggcaatcata tgacgcgttc aaagcttaaa taattctccc gcttatttta
101 agtacttcgt tgctaagttt gcgtttgaaa aatgtgggat ccactgttaa
151 atgagttccc cgacaccgtt cacggtttta ggtgtatgtt agcagttaaa
201 tatttgcagt tagtagagaa aacttactct cctgatacat tgggttacga
251 tttgataagg gatttaatcc tggtaataag ggctaggaat tatgtcgaag
301 cgaccagcag atataatcat ttccacgccc gcttcgaagg tacgccgccg
351 tctcaacttc gacagcccat atgtgagccg tgctgctgcc cccattgtcc
401 gcgtcaccaa agcaaaagca tgggcgaaca ggcccatgaa cagaaagccc
451 aggatgtaca ggatgtacag aagtccagat gttcctagag gatgtgaagg
501 tccatgtaag gttcagtcgt ttgagtccag acatgatatt cagcatatag
551 gtaaagtaat gtgtgttagt gatgttactc gtggtactgg gctgacccat
601 agagttggta agagattttg tgttaagtct gtttatgtgt tgggtaagat
651 ctggatggat gagaacatta agacgaagaa tcacacgaat agtgtgatgt
701 ttttcttggt cagagatcgt agacctgttg ataaacctca agattttgga
751 gaggtattta atatgtttga taatgagccc agtacggcga ctgtgaagaa
801 tgttcatcgt gataggtatc aagttctgcg caaatggtat gcaactgtca
851 ccggtggaca atacgcttca aaggaacaag ctctcgtgaa gaaatttatt
901 agagttaata attatgttgt gtataaccag caggaagctg gcaagtatga
951 gaatcattct gagaatgctt taatgttgta tatggcgtgt actcacgcct
1001 ctaacccagt gtatgctacc ttgaagatac ggatctactt ctatgattcc
1051 gtgacaaatt aataaatatt gaattttatt gaagatgatt ggtttacaaa
1101 tacaacatgt tgtaaaacat tccataatac atgatcaact gctctaacta
1151 cattattaat actgacaatt cctaagttat ttaaatattt aagcacttga
1201 gtcttaaaga cccttaagaa acgaccagtc ggaggctgtg aggtcatcca
1251 gattcggaaa gctatgaaac atttgtgtat ccccaacgct ttcctcaggt
1301 tgtgattgaa ctggatcctg atcgtgagta tatccatatt cgtcgtgaat
1351 ggacggttga cgttgctgat gatcttgaaa tagaggggat ttggaacttc
1401 ccagatatat gcgccattcg ctgcttgagc tgcagtgatg ggttcccctg
1451 tgcgtgaatc catggttgtg gcagttgatt gacagataat aagagaaccc
1501 ctcattcata tctactctcc tcctcctgtt gcgtctcttc gcttccctgt
1551 gctgtacttt gattggaagc tgagtacagt ggtccttcga gagtgatgaa
1601 gattgcattt tttaaggccc aattctttaa tgctgtgttt ttttcctcgt
1651 tgaggaattc cttataactg ctgttcgtcc caggattgca caggaagatt
1701 gtcggtatcc cgcctttaat ttgaactggc tttccgtatt ttgtgttgga
1751 ctgccagtct ctttgggccc ccatgaactc tttaaagtgt ttgaggaaat
1801 gcgggtcgac gtcatcaatg acgttgtacc aggcgtcgtt actgtatatt
1851 ttgggactca ggtccagatg tccgcacaaa tagttatgtg gtcccaatga
1901 tctagcccac atcgtcttcc ccgttcgact atctccctca attactatac
1951 tccgaggtct aaggggccgc gcagcggcat cgacaacgtt atcgatggcc
2001 caaattccaa gttcttctgg aacttgatcg aaagaagaag gagaaaaagg
2051 gaaaatatac ggagcgggtg cctctctgaa gattcttgtt agatttgcat
2101 ttaaattatg aaattgtagt ccaaaaattt taggagctag ttccttaagg
2151 actctaagag cctctgactt actgcccgcg ttaagtgctg cggcgtaagc
2201 gccgttggct gtctgctgtc ctcctctcgg tgatcttcca tctatctgaa
2251 actctcccca ctcgaaagcg tccccgtcct tgttgatgta ggccttgaca
2301 tctgagcttg atttagctcc ctgaatgttc ggatggaaat gtgctgcccg
2351 gttgggggaa accaggtcga agaatttgtt atttgtgcag acgaatttgc
2401 cctcgaaccg gatgagcaca gggagatgag ggctcccatc ttcgtgtaac
2451 tctctgcaga gtttgatgta tttttttttc gagggtgtgt tgatggcttg
2501 aatttgggaa agtgcttcct ctttagtgag tgagcactgt ggataagtga
2551 tgacgtaaag gatagcttgt actttaaaac gtttgggggg agccattgac
2601 tttggtcaat tagagacaac tgatggcctt tttccctgtt tattggagac
2651 tggatacaat ttatagtgtc taaaggtgcc attctgtaaa taactagaag
2701 ttgttgaaat caaatacctc ttggcccaaa agcggccatc cgtataatat
2751 t