Sequence of DPV Cotton leaf curl Burewala virus
Cotton leaf curl Burewala virus isolate In:Fazilka:2009 segment DNA A, complete sequence.
ACC No: JF502355
Dated: 2012-05-04 | Length: 2759 | CRC: 749661495
ID JF502355; SV 1; circular; genomic DNA; STD; VRL; 2759 BP.
XX
AC JF502355;
XX
DT 29-FEB-2012 (Rel. 111, Created)
DT 04-MAY-2012 (Rel. 112, Last updated, Version 2)
XX
DE Cotton leaf curl Burewala virus isolate In:Fazilka:2009 segment DNA A,
DE complete sequence.
XX
KW .
XX
OS Cotton leaf curl Burewala virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
XX
RN [1]
RP 1-2759
RX PUBMED; 22307170.
RA Rajagopalan P.A., Naik A., Katturi P., Kurulekar M., Kankanallu R.S.,
RA Anandalakshmi R.;
RT "Dominance of resistance-breaking cotton leaf curl Burewala virus (CLCuBuV)
RT in northwestern India";
RL Arch. Virol. 157(5):855-868(2012).
XX
RN [2]
RP 1-2759
RA Naik A.S., Katturi P., Rajagopalan P.A., Kankanallu R.S., Anandalakshmi R.;
RT ;
RL Submitted (05-MAR-2011) to the INSDC.
RL Plant-Virus Interactions Lab, Maharashtra Hybrid Seeds Co Ltd, Jalna -
RL Aurangabad road, Jalna, Maharashtra 431 203, India
XX
FH Key Location/Qualifiers
FH
FT source 1. .2759
FT /organism="Cotton leaf curl Burewala virus"
FT /segment="DNA A"
FT /host="cotton"
FT /isolate="In:Fazilka:2009"
FT /mol_type="genomic DNA"
FT /country="India"
FT /collection_date="06-Sep-2009"
FT /note="PCR_primers=fwd_name: CBVs-C1For_2533-2569,
FT rev_name: CBVs-V1Rev_528-494"
FT /db_xref="taxon:620894"
FT gene 132. .488
FT /gene="V2"
FT CDS 132. .488
FT /codon_start=1
FT /gene="V2"
FT /product="pre coat protein"
FT /protein_id="AFB83429.1"
FT /translation="MWDPLLNEFPDTVHGFRCLLAVKYLQLVEKTYSPDKLGYDLIRDL
FT ILVIRARNYVEATSRYNHFHARFEGTPSSQLRQPICEPCCCPHCPRHQSKSMGEQAHEQ
FT KAQDVQDVQKSRCS"
FT gene complement(283. .807)
FT /gene="C5"
FT CDS complement(283. .807)
FT /codon_start=1
FT /gene="C5"
FT /product="C5 protein"
FT /protein_id="AFB83431.1"
FT /translation="MNILHSRRTGLIIKHIKYLSKILRFINRSTISNQEKHPAIRVILR
FT LNVLIHPDLTQHITRLNTKFLTNSMGQPSTTSNITNTHYFTYMLNIMSGLQRLNLTWTF
FT TSSRNIWTSVHPVHPGLSVHGPVRPCFCFGDADNGGSSTAHIWAVEVETTAYLRSGRGN
FT DYICWSLRHNS"
FT gene 292. .1062
FT /gene="V1"
FT CDS 292. .1062
FT /codon_start=1
FT /gene="V1"
FT /product="coat protein"
FT /protein_id="AFB83430.1"
FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYVSRAAAPIVRVTKAKAWA
FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSLESRHDIQHIGKVMCVSDVTRGTGLTHR
FT VGKKFCVKSGYVLRKIWMDENIKTKNHTNSGMFFLVRDRRPVDKPQDFGEVFNMFDNEP
FT STATVKNVHRDKYQVLRKWYATVTGGQYASKEQALVKKFIRVNNYVVYNQQETGKYENH
FT SENALMLYMACTHASNPVYATLKIRIYFYDSVTN"
FT gene complement(1059. .1463)
FT /gene="C3"
FT CDS complement(1059. .1463)
FT /codon_start=1
FT /gene="C3"
FT /product="replication enhancer protein"
FT /protein_id="AFB83433.1"
FT /translation="MDSRTGEPITAAQAGNGAYIWEVPNPLYFKIISHVNRPFTTNMDI
FT HTIRIQFNHNLRKALGIHKCFIAFRIWMTSQPPTGRFLRVFRTQVLKYLNNLGIVSINN
FT VVRAVDHVLWNVLQHVVFVDQSSSIKFNIY"
FT gene complement(1505. .2596)
FT /gene="C1"
FT CDS complement(1505. .2596)
FT /codon_start=1
FT /gene="C1"
FT /product="replication associated protein"
FT /protein_id="AFB83432.1"
FT /translation="MAPPKRFKIQAKNYFITYPQCSLTKEEALSQIQAINTPSNKKYIK
FT LCRELHEDGSPHLHVLIQFEGKFVCTNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKAYI
FT DKDGDTLEWGEFQIDGRSARGGQQTANDAYAAALYAGSKSEALRVIRELAPKGCILQFH
FT NLNAILRRIFRSPPAPNISPFSPSSFDQVPERTEVWAIDNVVDVAERPLRPRSIEIEGD
FT SRPGKTMWARSLGPYSYLCGHLDLSPKVYSNDAWYNVIDDVDPHFLKHFKEFMGAQRDW
FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYNEFLNEEKITSLKNWALKNAIFITLEGPL
FT YSASNQSTAQGSEETQQEEESRS"
FT gene complement(2137. .2682)
FT /gene="C4"
FT CDS complement(2137. .2682)
FT /codon_start=1
FT /gene="C4"
FT /product="C4 protein"
FT /protein_id="AFB83434.1"
FT /translation="MPFGDTINCIQSPIPRVKGHQLSLIDQSQWLPPNVLKYKPKIISS
FT LIHSAHSLKRKHFPKFKPSTHPRIKNTSNSAESYTKMGALISMCSSSSRANSSARITDS
FT STWYPQPGQHISIRTFRELNQAQMSRPTSTRTGTLSSGESFRSMEDQQEEDSKQPTTLT
FT PQHFTQAVSQRLLESLGN"
XX
SQ Sequence 2759 BP; 723 A; 551 C; 649 G; 836 T; 0 other;
jf502355 Length: 2759 04-MAY-2012 Type: N Check: 5855 ..
1 accggatggc cgcgcgactt ttttgtgggc cctaccatta actctcgtcg
51 gccaatcata gaaagcgctc aaagcttaaa ttatcttccc gcctaatata
101 agtactccgt tgctaagtat gcgttggaaa aatgtgggat ccactgttaa
151 atgagttccc cgacaccgtt cacggtttta ggtgtttgtt agcagttaaa
201 tatttgcagt tagtagagaa aacttactct cctgataaat tgggttacga
251 tttgataagg gatttaatcc tggtaataag ggctaggaat tatgtcgaag
301 cgaccagcag atataatcat ttccacgccc gcttcgaagg tacgccgtcg
351 tctcaacttc gacagcccat atgtgagccg tgctgctgcc cccattgtcc
401 gcgtcaccaa agcaaaagca tgggcgaaca ggcccatgaa cagaaagccc
451 aggatgtaca ggatgtacag aagtccagat gttcctagag gatgtgaagg
501 tccatgtaag gttcaatcgt tggagtccag acatgatatt cagcatatag
551 gtaaagtaat gtgtgttagt gatgttactc gtggtactgg gctgacccat
601 agagttggta agaaattttg tgttaagtct ggttatgtgt tgcgtaagat
651 ctggatggat gagaacatta agacgaagaa tcacacgaat agcgggatgt
701 ttttcttggt tagagatcgt agacctgttg ataaacctca agattttgga
751 gaggtattta atatgtttga taatgagccc agtacggcga ctgtgaagaa
801 tgttcatcgt gataagtatc aagttctgcg caaatggtat gcaactgtca
851 ccggtggaca atacgcttca aaggaacaag ctctcgtgaa gaaatttatt
901 agagttaata attatgttgt gtataaccag caggaaactg gcaagtatga
951 gaatcattct gagaatgctt taatgttgta tatggcgtgt actcacgcct
1001 ctaacccagt gtatgctacc ttgaagatac ggatctactt ctatgattcc
1051 gtgacaaatt aataaatatt gaattttatt gaagatgatt ggtctacaaa
1101 tacaacatgt tgtaatacat tccataatac atgatcaact gctctaacta
1151 cattattaat actgacaatt cctaagttat ttaaatattt aagcacttga
1201 gtcctaaaga cccttaagaa acgaccagtc ggaggctgtg aggtcatcca
1251 gattcggaaa gctatgaaac atttgtgtat ccccaacgct ttcctcaggt
1301 tgtgattgaa ctggatcctg atcgtgtgta tatccatatt cgtcgtgaat
1351 ggacggttga cgtggctgat gatcttgaaa tagaggggat ttggaacttc
1401 ccagatatat gcgccattcc ctgcttgagc tgcagtgatg ggttcccctg
1451 tgcgtgaatc catggttgtg gcagttgatt gacagatact aagaacaccc
1501 tcattcaaga tctactctcc tcctcctgtt gcgtctcttc gcttccctgt
1551 gctgtacttt gattggaagc tgagtacagt ggtccttcga gagtgatgaa
1601 tattgcattt tttaaggccc aattctttaa tgatgtgatt ttttcctcgt
1651 tgaggaattc attataactg ctgttcggac caggattgca caggaagatt
1701 gtcggtatcc cgcctttaat ttgaactggc tttccgtatt ttgtgttgga
1751 ctgccagtct ctttgggccc ccatgaactc tttaaagtgt ttgaggaaat
1801 gcgggtcgac gtcatcaatg acgttgtacc aggcgtcgtt actgtatact
1851 ttgggactca ggtccagatg tccgcacaaa tagctatatg gtcccaatga
1901 tctagcccac atcgtcttcc cggggcgact atctccctca atttctatac
1951 tccgaggtct aaggggccgc tcagcgacat cgacaacgtt atcgatggcc
2001 caaacttcag ttctttctgg aacctgatcg aaagaagaag gagaaaaagg
2051 agaaatatta ggagccggtg ggctcctgaa gattcttctt agaatggcat
2101 ttaaattatg gaattggagt atacaaccct taggagctag ttccctaatg
2151 actctaagag cctctgactt actgcctgcg taaagtgctg cggcgtaagc
2201 gtcgttggct gtttgctgtc ctcctcttgc tgatcttcca tcgatctgaa
2251 actctcccca ctcgagagtg tccccgtcct tgtcgatgta ggccttgaca
2301 tctgagcttg atttagctcc ctgaatgttc ggatggaaat gtgctgacct
2351 ggttggggat accaggtcga agaatctgtt attcgtgcag acgaatttgc
2401 cctcgaactg gatgagcaca tggagatgag ggctcccatc ttcgtgtaac
2451 tctctgcaga gtttgatgta ttttttattc gagggtgtgt tgatggcttg
2501 aatttgggaa agtgcttcct ctttagtgag tgagcactgt ggataagtga
2551 tgaaataatt tttggcttgt attttaaaac gtttgggggg agccattgac
2601 tttggtcaat tagagacaac tgatggcctt ttactctggg aattggagac
2651 tggatacaat ttatagtgtc tccaaatggc atattctgta aataactaga
2701 agtttgtttg aaattcaaat tcccctttgg gctccaaaag cggccatccg
2751 tataatatt