Sequence of DPV Cotton leaf curl Burewala virus
Cotton leaf curl Burewala virus isolate In:Haryana:2010 segment DNA A, complete sequence.
ACC No: JF502372
Dated: 2012-05-04 | Length: 2759 | CRC: 903103532
ID JF502372; SV 1; circular; genomic DNA; STD; VRL; 2759 BP.
XX
AC JF502372;
XX
DT 29-FEB-2012 (Rel. 111, Created)
DT 04-MAY-2012 (Rel. 112, Last updated, Version 2)
XX
DE Cotton leaf curl Burewala virus isolate In:Haryana:2010 segment DNA A,
DE complete sequence.
XX
KW .
XX
OS Cotton leaf curl Burewala virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
XX
RN [1]
RP 1-2759
RX PUBMED; 22307170.
RA Rajagopalan P.A., Naik A., Katturi P., Kurulekar M., Kankanallu R.S.,
RA Anandalakshmi R.;
RT "Dominance of resistance-breaking cotton leaf curl Burewala virus (CLCuBuV)
RT in northwestern India";
RL Arch. Virol. 157(5):855-868(2012).
XX
RN [2]
RP 1-2759
RA Katturi P., Naik A.S., Rajagopalan P.A., Kankanallu R.S., Anandalakshmi R.;
RT ;
RL Submitted (05-MAR-2011) to the INSDC.
RL Plant-Virus Interactions Lab, Maharashtra Hybrid Seeds Co Ltd, Jalna -
RL Aurangabad road, Jalna, Maharashtra 431 203, India
XX
FH Key Location/Qualifiers
FH
FT source 1. .2759
FT /organism="Cotton leaf curl Burewala virus"
FT /segment="DNA A"
FT /host="cotton"
FT /isolate="In:Haryana:2010"
FT /mol_type="genomic DNA"
FT /country="India"
FT /collection_date="15-Sep-2010"
FT /note="PCR_primers=fwd_name: CBVs-C1For-2533-2569,
FT rev_name: CBVs-V1Rev-528-494"
FT /db_xref="taxon:620894"
FT gene 132. .488
FT /gene="V2"
FT CDS 132. .488
FT /codon_start=1
FT /gene="V2"
FT /product="pre coat protein"
FT /protein_id="AFB83492.1"
FT /translation="MWDPLLNEFPDTVHGLRCMLAVKYLQLVEKTYSPDTLGYDFLMDL
FT ILVIRARNYVEATSRYNHFHARFEGTPPSQLRQPICEPCCCPHCPRHQSKSMGEQAHEQ
FT KAQDVQDVQKSRCS"
FT gene complement(283. .807)
FT /gene="C5"
FT CDS complement(283. .807)
FT /codon_start=1
FT /gene="C5"
FT /product="C5 protein"
FT /protein_id="AFB83498.1"
FT /translation="MNILYSRRTGLIIKHIKYLSKILRFINRSTISNQEKHHTIRVILR
FT LNVLIHPDLTQHINRLNTKSLTNSMGQPSTTSNITNTHYFTYMLNIMSGLKRLNLTWTF
FT TSSRNIWTSVHPVHPGLSVHGPVRPCFCFGDADNGGSSTAHIWAVEVETAAYLRSGRGN
FT DYICWSLRHNS"
FT gene 292. .1062
FT /gene="V1"
FT CDS 292. .1062
FT /codon_start=1
FT /gene="V1"
FT /product="coat protein"
FT /protein_id="AFB83493.1"
FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYVSRAAAPIVRVTKAKAWA
FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGTGLTHR
FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP
FT STATVKNVHRDRYQVLRKWYATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENH
FT SENALMLYMACTHASNPVYATLKIRIYFYDSVTN"
FT gene complement(1059. .1463)
FT /gene="C3"
FT CDS complement(1059. .1463)
FT /codon_start=1
FT /gene="C3"
FT /product="replication enhancer protein"
FT /protein_id="AFB83495.1"
FT /translation="MDSRTGEPITAAQAGNGAYIWEVPNPLYFKIISHVNRPFTTNMDI
FT LTIRIQFNHNLRKALGIHKCFIAFRIWMTSQPPTGRFLRVFRTQVLKYLNNLGIVSINN
FT VVRAVDHVLWNVLQHVVFVDQSSSIKFNIY"
FT gene complement(1204. .1608)
FT /gene="C2"
FT CDS complement(1204. .1608)
FT /codon_start=1
FT /gene="C2"
FT /product="transcription activator protein"
FT /protein_id="AFB83494.1"
FT /translation="MQSSSLSKDHCTQLPIKVQHREAKRRNRRRRVDFECGCFNYLSIN
FT CHNHGFTHRGTHHCSSSREWRIYLGSSKSPLFQDHQPRQPSIHDEYGYTHDQDPVQSQP
FT EESVGDTQMFHSFPNLDDLTASDWSFLKGL"
FT gene complement(1505. .2596)
FT /gene="C1"
FT CDS complement(1505. .2596)
FT /codon_start=1
FT /gene="C1"
FT /product="replication associated protein"
FT /protein_id="AFB83496.1"
FT /translation="MAPPKRFKVQAKNYFITYSQCSLTKDEALSQIQAINTPSNKKNIK
FT LCRELHEDGDLHLHGLIQFEGKFGCTNNKFFDLVSPTGSAHFHPNIQGAKSSSDVKAYI
FT DKDGNTLEWGEFQIDGSSARGGQQSANDAYAAALNAGSKSEALRVIKELVPKDFVLRFY
FT NLNANLDRIFQEPPAPYISPFSPSSFDQVPEELEVWAIDNVVDAAARPLRPRSIVIEGD
FT SRTEKKKWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHFLKHFKEFMGAQRDW
FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYTEFLNEEKNTALKNWALKNAIFISLEGPL
FT YSASNQSTAQGSEETQQEEESRL"
FT gene complement(2137. .2682)
FT /gene="C4"
FT CDS complement(2137. .2682)
FT /codon_start=1
FT /gene="C4"
FT /product="C4 protein"
FT /protein_id="AFB83497.1"
FT /translation="MPFGDTINRIPSPIPRVKGHPLSLIDQSQWLPPNVLKYKPKIISS
FT LIHSAHSLKMKHFPKFKPSTHPRIKKTSNSAESYTKMGTSISMDSFSSRANSAAQITNS
FT STWYPQPGQHISIRTFRELNQAQMSRPTSTRTGTLWSGESFRSMEVQQEEDSSQPTTLT
FT PQHLTRAVSQRLLESLRN"
XX
SQ Sequence 2759 BP; 722 A; 547 C; 644 G; 846 T; 0 other;
jf502372 Length: 2759 04-MAY-2012 Type: N Check: 3620 ..
1 accggatggc cgcgcgattt ttttgtgggc ccaaccatta actcttgtcg
51 gccaatcata tgacgcgctc aaagcttaaa taattctccc gcctattata
101 agtacttcgt tgctaagtat gcgtttgaaa aatgtgggat cccctgttaa
151 atgagttccc cgacaccgtt cacggtctta ggtgtatgtt agcagttaaa
201 tatttgcagt tagtagagaa aacttactct cctgatacat tgggttacga
251 ttttttaatg gatttaatcc tggtaataag ggctaggaat tatgtcgaag
301 cgaccagcag atataatcat ttccacgccc gcttcgaagg tacgccgccg
351 tctcaacttc gacagcccat atgtgagccg tgctgctgcc cccattgtcc
401 gcgtcaccaa agcaaaagca tgggcgaaca ggcccatgaa cagaaagccc
451 aggatgtaca ggatgtacag aagtccagat gttcctagag gatgtgaagg
501 tccatgtaag gttcagtcgt ttgagtccag acatgatatt cagcatatag
551 gtaaagtaat gtgtgttagt gatgttactc gtggtactgg gctgacccat
601 agagttggta agagattttg tgttaagtct gtttatgtgt tgggtaagat
651 ctggatggat gagaacatta agacgaagaa tcacacgaat agtgtgatgt
701 ttttcttggt tagagatcgt agacctgttg ataaacctca agattttgga
751 gaggtattta atatgtttga taatgagccc agtacggcga ctgtaaagaa
801 tgttcatcgt gataggtatc aagttctgcg caaatggtat gcaactgtca
851 ccggtggaca atacgcttca aaggaacaag ctctcgtgaa gaaatttatt
901 agagttaata attatgttgt gtataaccag caggaagctg gcaagtatga
951 gaatcattct gagaatgctt taatgttgta tatggcgtgt actcacgcct
1001 ctaacccagt gtatgctacc ttgaagatac ggatctactt ctatgattcc
1051 gtgacaaatt aataaatatt gaattttatt gaagatgatt ggtctacaaa
1101 tacaacatgt tgtaatacat tccataatac atgatcaact gctctaacta
1151 cattattaat actgacaatt cctaagttat ttaaatattt tagcacttga
1201 gtcctaaaga cccttaagaa acgaccagtc ggaggctgtg aggtcatcca
1251 gattcggaaa gctatgaaac atttgtgtat ccccaacgct ttcctcaggt
1301 tgtgattgaa ctggatcctg atcgtgagta tatccatatt cgtcgtgaat
1351 ggacggttga cgtggctgat gatcttgaaa tagaggggat ttggaacttc
1401 ccagatatat gcgccattcc ctgcttgagc tgcagtgatg ggttcccctg
1451 tgcgtgaatc catggttgtg gcagttgatt gacagataat taaaacaccc
1501 gcattcaaag tctactctcc tcctcctgtt gcgtctcttc gcttccctgt
1551 gctgtacttt gattggaagc tgagtacagt ggtccttcga gagagatgaa
1601 gattgcattt tttaaggccc aattctttaa tgctgtgttt ttttcctcgt
1651 tgaggaattc cgtataactg ctgttcggac caggattgca caggaagatt
1701 gtcggtatcc cgcctttaat ttgaactggc tttccgtatt ttgtgttgga
1751 ctgccagtct ctttgggccc ccatgaactc tttaaagtgt ttgaggaaat
1801 gcgggtcgac gtcatcaatg acgttgtacc aggcgtcgtt actgtatact
1851 ttgggactca ggtctagatg tccgcacaaa tagttatgtg gtcccaatga
1901 tctagcccac tttttcttct ccgttcgact atctccctca attactatac
1951 tccgaggtct aaggggccgc gcagcggcat cgacaacgtt atcgatggcc
2001 caaacttcaa gttcttctgg aacttgatcg aaagaagaag gagaaaaagg
2051 agaaatatag ggagccggtg gctcctgaaa gattctgtct agatttgcat
2101 ttaaattata aaatcgtagt acaaaatctt taggaactag ttccttaatg
2151 actctaagag cctctgactt actgcccgcg ttaagtgctg cggcgtaagc
2201 gtcgttggct gactgctgtc ctcctcttgc tgaacttcca tcgatctgaa
2251 actctcccca ctccagagtg ttcccgtcct tgtcgatgta ggccttgaca
2301 tctgagcttg atttagctcc ctgaatgttc ggatggaaat gtgctgaccc
2351 ggttggggat accaggtcga agaatttgtt atttgtgcag ccgaatttgc
2401 cctcgaactg aatgagtcca tggagatgga ggtccccatc ttcgtgtaac
2451 tctctgcaga gtttgatgtt ttttttattc gagggtgtgt tgatggcttg
2501 aatttgggaa agtgcttcat ctttagtgag tgagcactgt gaataagtga
2551 tgaaataatt tttggcttgt actttaaaac gtttgggggg agccattgac
2601 tttgatcaat tagagacaag ggatggcctt ttactctggg aattggagac
2651 gggatacgat ttatagtgtc tccaaatggc atattctgtg aaaaaataaa
2701 agttcgtttg aaattcaaat tcccctttgg gctccaaaag cggccatccg
2751 tataatatt