Sequence of DPV Chickpea chlorotic stunt virus
Chickpea chlorotic stunt virus strain CHN, complete genome.
ACC No: JF507725
Dated: 2013-05-07 | Length: 6021 | CRC: 654330053
ID JF507725; SV 1; linear; genomic RNA; STD; VRL; 6021 BP.
XX
AC JF507725;
XX
DT 07-MAY-2013 (Rel. 116, Created)
DT 07-MAY-2013 (Rel. 116, Last updated, Version 1)
XX
DE Chickpea chlorotic stunt virus strain CHN, complete genome.
XX
KW .
XX
OS Chickpea chlorotic stunt virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Polerovirus.
XX
RN [1]
RC Publication Status: Available-Online prior to print
RP 1-6021
RX PUBMED; 22476900.
RA Zhou C.J., Xiang H.Y., Zhuo T., Li D.W., Yu J.L., Han C.G.;
RT "Nucleotide sequence of a chickpea chlorotic stunt virus relative that
RT infects pea and faba bean in China";
RL Arch. Virol. 0:0-0(2012).
XX
RN [2]
RP 1-6021
RA Zhou C.J., Xiang H.Y., Li D.W., Yu J.L., Han C.G.;
RT ;
RL Submitted (08-MAR-2011) to the INSDC.
RL Plant Pathology, China Agricultural University, 2 Yuanmingyuan West Rd.,
RL Haidian District, Beijing 100193, China
XX
FH Key Location/Qualifiers
FH
FT source 1. .6021
FT /organism="Chickpea chlorotic stunt virus"
FT /host="pea"
FT /strain="CHN"
FT /mol_type="genomic RNA"
FT /country="China"
FT /collected_by="Hai-Ying Xiang"
FT /collection_date="15-Aug-2010"
FT /PCR_primers="fwd_name: Cpc001F, fwd_seq:
FT acaaaagaaagcaagagggaaaac, rev_name: Cpc1485R, rev_seq:
FT ggaaaactcttctagcaattctt"
FT /PCR_primers="fwd_name: Cpc1351F, fwd_seq:
FT gagaatagaaattatatggcc, rev_name: Cpc3065R, rev_seq:
FT cttggtaaggtcgttgttattc"
FT /PCR_primers="fwd_name: Cpc2981F, fwd_seq:
FT cgactggagtgtctctaactg, rev_name: Cpc4331R, rev_seq:
FT gatggtgattcggaatgac"
FT /PCR_primers="fwd_name: Cpc4308F, fwd_seq:
FT gcggggtcattcaggatcacc, rev_name: Cpc6021R, rev_seq:
FT acaccgcagtgccgtagg"
FT /db_xref="taxon:328430"
FT CDS 51. .863
FT /codon_start=1
FT /product="P0"
FT /note="ORF1"
FT /protein_id="AEI55837.1"
FT /translation="MNVLINQYTSTLEINFSPSVSLETRRSLICLFLSSSSKFIQQSNE
FT QYGTNSTTCYRSLLLLLPFLFGGFEFLNGQLVIPRLHGSNRLGWYFQRLLSNAGFCTLR
FT LQSCRSAQDYPTIQIAPTRVSLYRYIQCPLVEGLSGHQDVLSLGLQYFTKIVGTYVRQL
FT KQYNLCLRSEIVMGDSVGLDLDLLGSLLLDGPDHNNTYHAYSGSRIINCLHRCYGKALT
FT SDIWELFGVDHCACLQVPSFPLEAEIPEIGSEHDEDSEGEDDEGFWEL"
FT CDS join(190. .1821,1821. .3560)
FT /codon_start=1
FT /ribosomal_slippage
FT /product="RNA dependent RNA polymerase"
FT /note="P1-P2; ORF1-ORF2"
FT /protein_id="AEI55839.1"
FT /translation="MALIQQLAIALFCFCSLFYSGASSSLMANWSSPAYTGVTVLGGTS
FT SDYYQTLGFAPYVYNPVEVPKTIPQFKLPQPELAYTDIFNVLWLKGYQDTKTCLALVFN
FT TSQKSLERMYANLNNITSACALKLSWAIVWVWTWIFWALCSWMVRIITTHIMLIVAVGL
FT LIACTVATAKLLHLIFGSFSVWIIVPVYRSLAFLWKLRSPKSVASTMKIVKEKMTKGFG
FT SYDMIMSPPKSCVLEMLHDDEQHCGYASCILLADGTVGLLTSYHVIEEAYWVKSHKTGN
FT KIKTSDFRPLTQSRNADLTIMVGPPNWQGLLGCSAAQYVTMKNLAAGDARIFYRRDGEW
FT YSGVAKLVGPHELNFVNVLSNTEPGFSGTPYFSGNKIVGVHTGGDENENRNYMAAIPHI
FT EGLTASKYIYETTAPKGRIFDENLYQELLEEFSSAEVHSIMKHRGFDMECAHKFNGGWV
FT WIDCNDDLTLAEIQKLLSSKGKTGYDGVMKIPKSDVYEDKLLNGKNLKGSDTCHIELKE
FT ELPRITEETFYDAIDSMELETSKKANLKRGARRRPRKNRRKRLHPKDQERRWRHCPESD
FT RSSCRKNECSRIGETSNLQGGSEGAEEYKHPTQEEQKAQRKAWRRDQANSFNYFFASQY
FT KWEVPAAPEEVPGFEACGRLPQFYHPKQKQQGRWGEKVVAQHPEMGEKVRGFGWPEFGK
FT EAELKSLRLQTARWLKRAESSKIPSTEDRERVIGKTVEAYKNVKSTCPAATRLNELSWE
FT QFQKSFQPAVHSLELDAGIGVPYIAYGLPTHRGWVENHERQLLPILAQLTYDRLKKMSQ
FT VSFEDLSAEELVQKGLCDPIRVFVKGEPHKQSKLDEGRYRLIMSVSLVDQLVARVLFQE
FT QNKLEITLWRSIPSKPGMGLSTDAQVTEFMSSLSQHVQVPVEDLVYDWEKHVLPTDCSG
FT FDWSVSNWLLQDEMEVRNRLTQNNNDLTKRLRSCWLKCLSNSVLALSDGSLFAQRVSGV
FT QKSGSYNTSSTNSRVRVMCAFHAGATWCIAMGDDALESVDTNLEVYKNLGLKVEVSGQL
FT EFCSHIFEKPDLAVPVNVGKMLYKLIYGYNPECGSIQVLRNYIDACTSVLNELRHDPEM
FT VQLLYSWLLDPVLPQN"
FT CDS 190. .2283
FT /codon_start=1
FT /product="P1"
FT /note="ORF1"
FT /protein_id="AEI55838.1"
FT /translation="MALIQQLAIALFCFCSLFYSGASSSLMANWSSPAYTGVTVLGGTS
FT SDYYQTLGFAPYVYNPVEVPKTIPQFKLPQPELAYTDIFNVLWLKGYQDTKTCLALVFN
FT TSQKSLERMYANLNNITSACALKLSWAIVWVWTWIFWALCSWMVRIITTHIMLIVAVGL
FT LIACTVATAKLLHLIFGSFSVWIIVPVYRSLAFLWKLRSPKSVASTMKIVKEKMTKGFG
FT SYDMIMSPPKSCVLEMLHDDEQHCGYASCILLADGTVGLLTSYHVIEEAYWVKSHKTGN
FT KIKTSDFRPLTQSRNADLTIMVGPPNWQGLLGCSAAQYVTMKNLAAGDARIFYRRDGEW
FT YSGVAKLVGPHELNFVNVLSNTEPGFSGTPYFSGNKIVGVHTGGDENENRNYMAAIPHI
FT EGLTASKYIYETTAPKGRIFDENLYQELLEEFSSAEVHSIMKHRGFDMECAHKFNGGWV
FT WIDCNDDLTLAEIQKLLSSKGKTGYDGVMKIPKSDVYEDKLLNGKNLKGSDTCHIELKE
FT ELPRITEETFYDAIDSMELETSKKANLNGERGAVLVKTGEKGFTQKTKNDDGDTVQKVI
FT EALVAKMNVQELEKQVISKVAQKVQKNTSTPPKKNRRRRGKRGGEIKQTASTTSSPPST
FT NGKYLPPQKRSQGSKPVADSPNSTIQSKNNKVDGVKKSSPNTQKWVKKSEASAGPSSAK
FT KLN"
FT CDS 3756. .5849
FT /codon_start=1
FT /transl_except=(pos:4356. .4358,aa:OTHER)
FT /product="P3-P5"
FT /note="readthrough protein; ORF3-ORF5; expressed as a
FT result of translational readthrough by suppression of the
FT amber stop codon"
FT /protein_id="AEI55842.1"
FT /translation="MNTVLNRNNGRRRRNRRPVQRARRRNSVVVVETPRQPQRGRRRRR
FT NRRRATGRSTAGRRGSSETFVFSKDNLTGSSTGIVTFGPSLSDCPAFSSGILRAYHEYK
FT ITMVKLEFISEASSTSSGSIAYELDPHCKLTSLGSYINKFGITKNGQRTFTAKLINGIE
FT WHSSDEDQFRILYKGNGGSATAGSFRITIKCQTQNPKXVDDSSPPGPSPDPPPPPPPAP
FT SPEPQPCKKFRFWGYEGVPQNKIVTAQNNRNIDVRGLNYVKFFKWEDDNWTEVNLQANY
FT NVNNSQYAEPYMIIPASKGKYHVYLECDGQMAVKSVGGKADNSWRGLIAYDTSRRMWSV
FT GNYKGCIIENYKKTDSFVLGHPDVELNDCKFDKARGVEADWYASFQLTCDDDDGAWILY
FT APPIPKDSLYNYTVSYGEYTENMCEWGAVSISIDEDNSSTGNEVRIKPGRGYEMRRALP
FT EGKLEQQPWEDNPVQTNSWKENQSETSSDTDGESFVKAITGKLPITTKLPPKGFLSRLK
FT PSEKKDIARSKETNVKEADVGMVVRALGAESQTGIYDDVRERLSNNEMNQNLKELEADL
FT QEINRLEPPDELSYQEEVPDVDIWENKDTAVTIAKFDPDPWAHLRKEDPNPPKLKGTLS
FT KIGSSISGGSLSGGRLRKTAQQFYEETMKSKMTTVERNQYERILRGRGESVASEYLRSL
FT FSK"
FT CDS 3756. .4358
FT /codon_start=1
FT /product="coat protein"
FT /note="P3; ORF3"
FT /protein_id="AEI55840.1"
FT /translation="MNTVLNRNNGRRRRNRRPVQRARRRNSVVVVETPRQPQRGRRRRR
FT NRRRATGRSTAGRRGSSETFVFSKDNLTGSSTGIVTFGPSLSDCPAFSSGILRAYHEYK
FT ITMVKLEFISEASSTSSGSIAYELDPHCKLTSLGSYINKFGITKNGQRTFTAKLINGIE
FT WHSSDEDQFRILYKGNGGSATAGSFRITIKCQTQNPK"
FT CDS 3781. .4362
FT /codon_start=1
FT /product="movement protein"
FT /note="P4; ORF4"
FT /protein_id="AEI55841.1"
FT /translation="MADEGGIGVLFSGLGAATQWLWSRPLGSHSAEEDEEETVDALQEE
FT AQLEDEGQARHSYFRKTTSRAVPQELSRSGRVYQTAQLSALEYLGPTMNIKSQWSSWSS
FT SPRPLPPPQGRSLTSLIPTANSLRLGPTSINLESPRMDKGLSQRSLLTESSGTPQMRTN
FT SGYYTKETEAPLRRGHSESPSSAKLRIRNR"
XX
SQ Sequence 6021 BP; 1801 A; 1342 C; 1424 G; 1454 T; 0 other;
jf507725 Length: 6021 07-MAY-2013 Type: N Check: 7348 ..
1 acaaaagaaa cgtaagggga aaacttaacg ctgagtatct cgcgaagttt
51 atgaacgtgt taatcaatca atacacttca actcttgaga ttaatttctc
101 tccctctgtt tctctcgaaa ccagaagatc tctaatttgc ttatttcttt
151 cctcatcaag caaattcatt caacaatcaa acgagcaata tggcactaat
201 tcaacaactt gctatcgctc tcttctgctt ttgctccctt ttctattcgg
251 gggcttcgag ttccttaatg gccaactggt catcccccgc ttacacggga
301 gtaaccgtct tgggtggtac ttccagcgac tattatcaaa cgctgggttt
351 tgcaccctac gtctacaatc ctgtcgaagt gcccaagact atcccacaat
401 tcaaattgcc ccaaccagag ttagcttata cagatatatt caatgtcctc
451 tggttgaagg gttatcagga caccaagacg tgcttagcct tggtcttcaa
501 tacttcacaa aaatcgttgg aacgtatgta cgccaactta aacaatataa
551 cctctgcttg cgctctgaaa ttgtcatggg cgatagtgtg ggtctggacc
601 tggatctttt gggctctttg ctcttggatg gtccggatca taacaacaca
651 tatcatgctt atagtggcag taggattatt aattgcttgc accgttgcta
701 cggcaaagct cttacatctg atatttggga gcttttcggt gtggatcatt
751 gtgcctgttt acaggtccct agctttcctt tggaagctga gatccccgaa
801 atcggtagcg agcacgatga agatagtgaa ggagaagatg acgaagggtt
851 ttgggagcta tgacatgatt atgtcccccc ctaaaagctg tgtactagaa
901 atgctccacg atgatgaaca acattgtggt tatgcaagtt gcatattgct
951 ggctgatggg acggttggac ttttaacttc gtatcatgtc attgaagagg
1001 cttattgggt caaatcccac aaaactggaa ataaaatcaa aaccagtgat
1051 ttcaggcctc tcacccaatc ccgtaatgct gacttgacta tcatggtggg
1101 accccctaac tggcaaggcc tgttgggttg ctctgcagct caatatgtca
1151 cgatgaaaaa tttggccgcc ggtgacgctc gtatctttta ccgtagagat
1201 ggtgaatggt actctggagt ggcaaaacta gtggggcccc atgaattaaa
1251 cttcgtcaat gtcctgtcaa acacagaacc cggtttcagc ggcaccccct
1301 acttcagtgg aaacaaaata gttggagtac acactggggg cgatgagaat
1351 gagaatagaa attatatggc cgctatccct cacatcgaag gtctcacggc
1401 gagcaagtac atttatgaaa caactgctcc aaaaggccgg atttttgatg
1451 aaaacctgta ccaggaattg ctggaagaat tttcctctgc tgaagttcac
1501 tcgataatga agcatagagg atttgacatg gaatgcgctc ataaattcaa
1551 cggcggttgg gtatggattg actgtaatga cgatctcacc ctcgctgaaa
1601 tacaaaagtt gctttccagc aaagggaaaa ctgggtatga cggggtcatg
1651 aaaattccta agagtgatgt ctatgaggac aaactgttga atggtaaaaa
1701 tctcaaagga agtgacacct gtcatataga attaaaagaa gagctccccc
1751 gaataaccga ggaaaccttt tatgatgcca tcgattcgat ggaattagaa
1801 acctcgaaga aagctaattt aaacggggag cgaggcgccg tcctcgtaaa
1851 aaccggagaa aaaggcttca cccaaaagac caagaacgac gatggagaca
1901 ctgtccagaa agtgatagaa gctcttgtcg caaaaatgaa tgttcaagaa
1951 ttggagaaac aagtaatctc caaggtggct cagaaggtgc agaagaatac
2001 aagcacccca cccaagaaga acagaaggcg cagaggaaag cgtggaggag
2051 agatcaagca aacagcttca actacttctt cgcctcccag tacaaatggg
2101 aagtacctgc cgccccagaa gaggtcccag ggttcgaagc ctgtggcaga
2151 ctcccccaat tctaccatcc aaagcaaaaa caacaaggta gatggggtga
2201 aaaagtcgtc gcccaacacc cagaaatggg tgaaaaagtc agaggcttcg
2251 gctggcccga gttcggcaaa gaagctgaac taaaatcctt gcgattgcaa
2301 accgcgaggt ggctcaaacg cgctgagtca agtaaaatcc cgtcaactga
2351 ggatagggag cgcgttatcg gtaaaacagt agaggcatac aaaaatgtta
2401 aatcaacttg ccctgctgca acaaggctga acgagctgag ctgggaacaa
2451 tttcaaaaat cctttcagcc agccgttcac tctcttgaac ttgatgctgg
2501 aattggcgtt ccatacatag catatgggct ccccacccat agaggatggg
2551 ttgaaaacca cgaacgccag cttctcccca ttttggctca gctgacctat
2601 gaccgactaa agaagatgtc gcaggttagc ttcgaagacc tgagtgctga
2651 ggagttagta cagaagggtc tttgtgaccc catcagagtt tttgtcaagg
2701 gagaaccaca taagcaatcc aagcttgatg aggggcgcta ccgcctcatc
2751 atgtcggtta gccttgtaga ccaattggtg gcccgggtat tgttccaaga
2801 acagaacaag ttggagatta cactctggcg atcaatacca agcaaacccg
2851 gaatggggct ttctacggat gctcaagtga cggagttcat gagttctctg
2901 tcccaacatg tgcaagtacc agttgaagac ttggtatatg actgggaaaa
2951 gcatgtgttg cccacagatt gctccggatt cgactggagt gtctctaact
3001 ggctcctcca agatgaaatg gaggttagaa atcgccttac acagaataac
3051 aacgacctta ctaagcgctt gcgtagctgc tggttgaagt gtttatctaa
3101 tagtgtattg gcgttgtccg atggcagcct tttcgcacag cgagtgtcag
3151 gagttcagaa gtctggaagc tataatacta gctcgactaa ctccagagtc
3201 cgtgttatgt gcgcatttca tgcaggcgct acatggtgta tagccatggg
3251 agacgacgct ttggagtctg tggacaccaa cctagaggtg tataaaaatc
3301 taggtttaaa agtcgaggtt tcaggacaac tggaattttg ctctcacata
3351 tttgagaagc ctgacctcgc cgttccggtt aacgtgggaa aaatgcttta
3401 caaactcatc tacggttaca acccggaatg tggatccatc caggttctca
3451 gaaactacat tgacgcttgc acttcagtgt taaatgaatt gcgtcatgac
3501 cctgagatgg tccagctcct ttactcgtgg ctccttgatc cagtgttgcc
3551 acaaaattaa tcgagtaaga ggagcataca gatagccggt attagttgtt
3601 gcaatagccg gagtctcagt caacaattat agcgaaaatt gattacaaat
3651 ttcttgcagg ttttgccgca ggattcgtaa catcaatccc aatatcagtt
3701 tttgctattt acataatcta ccttaaaatt tccgcccacg taagatcaat
3751 tgttaatgaa tacggtctta aataggaata atggcagacg aaggaggaat
3801 aggcgtcctg ttcagcgggc tcggcgccgc aactcagtgg ttgtggtcga
3851 gacccctagg cagccacagc gcggaagaag acgaagaaga aaccgtagac
3901 gcgctacagg aagaagcaca gctggaagac gagggtcaag cgagacattc
3951 gtattttcga aagacaacct cacgggcagt tccacaggaa ttgtcacgtt
4001 cgggccgagt ctatcagact gcccagcttt cagctctgga atacttaggg
4051 cctaccatga atataaaatc acaatggtca agttggagtt catctccgag
4101 gcctcttcca cctcctcagg gtcgatcgct tacgagcttg atccccactg
4151 caaactcact tcgcttgggt cctacatcaa taaatttgga atcaccaaga
4201 atggacaaag gactttcaca gcgaagctta ttaacggaat cgagtggcac
4251 tcctcagatg aggaccaatt caggatacta tacaaaggaa acggaggctc
4301 cgctacggcg gggtcattcc gaatcaccat caagtgccaa actcagaatc
4351 cgaaataggt agatgacagt tccccccccg gaccaagtcc agatccacct
4401 ccaccccctc ccccggcgcc ttccccagaa ccacaacctt gtaagaaatt
4451 caggttttgg ggttatgaag gcgttccaca aaacaagata gttacggctc
4501 agaacaatag aaatattgat gtccgtggct taaattatgt gaagtttttc
4551 aaatgggagg atgacaattg gacagaagtc aacctacaag ccaattataa
4601 tgttaataat tcgcagtacg ctgaaccgta catgataatc cccgcttcaa
4651 aaggcaagta ccacgtctat ctcgagtgtg atggacagat ggctgtcaaa
4701 agtgttggag gaaaagcgga taactcttgg agaggcttga tagcgtatga
4751 cacatctaga agaatgtgga gtgtaggaaa ttataaaggc tgtatcatag
4801 aaaattataa gaaaacagac agctttgtac ttggtcaccc tgacgttgaa
4851 ttaaacgatt gcaagttcga caaagccagg ggagtagaag ctgattggta
4901 cgcgtcattc caattaacgt gtgatgacga tgatggagct tggatcctgt
4951 acgccccacc cataccaaag gacagtttgt acaactacac tgtttcttat
5001 ggagagtaca cagaaaatat gtgtgaatgg ggcgccgtat caatctcgat
5051 agatgaagac aatagctcta cagggaacga agtcagaatt aaacccggca
5101 gggggtatga aatgcgccgg gcactgccag aaggaaaact ggaacaacaa
5151 ccctgggaag acaacccagt tcaaacaaat tcctggaagg aaaaccagtc
5201 tgaaacctca agcgatacgg atggtgaatc ttttgtcaaa gcaataactg
5251 gcaagttgcc aatcactaca aagctccctc cgaaaggctt cctctcacgt
5301 ctcaaacctt ctgaaaagaa ggatatagcc cgatctaaag agactaatgt
5351 caaagaggct gatgtcggga tggtggttcg cgctttaggt gcagaatccc
5401 aaactggcat atatgatgac gttagagaga gactctcgaa taatgaaatg
5451 aatcaaaatc taaaagagtt agaagctgac ctacaagaga taaatcgctt
5501 ggaacccccc gatgagttgt cttatcaaga ggaggtgcct gatgtcgata
5551 tttgggagaa caaagatacg gctgtaacaa tagctaaatt tgacccagat
5601 ccatgggcac atctccgaaa ggaggatccc aatccgccca aacttaaagg
5651 aaccctatcc aaaatagggt cttctataag tggaggatcc ctttccgggg
5701 gacgtctgcg gaaaacagct caacagttct acgaagaaac gatgaaatca
5751 aagatgacga ctgttgaacg aaatcaatat gagcgaattc ttagagggcg
5801 tggtgaatct gtagcctcag aatatctgcg cagtctgttt tccaaatagt
5851 ggtatattaa ccgcccactt taaagatacg gttttcacca aacatgggtg
5901 tgttcatgtt tcctagcttc taggaattga agcaagctcg ggccgcagag
5951 tataaatgtc ggaacgacga agcgagagcg agtagcacag tgttacgtgg
6001 gtattctacg cactgccgtg t